Clone Sequence Records
BS15955.complete Sequence
1886 bp assembled on 2009-12-07
GenBank Submission: KX801723
> BS15955.complete
GAAGTTATCAGTCGACATGCACTGGTACGACGAATACAAGCACATCGGTT
ACGACTGGGATGCCAAGAAGATTATTAAACCACCACAAGGAGATCAAATT
GATGAGTTCCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCGTCAA
GGATCCACTTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATTGCTC
TGATCAAGCGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGAAGAG
TATGAGCCCTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGCCCAT
CAAGAACGTACCCGACCACAAACGCTCTTTCCTGCCCTCAGTTTCCGAGA
AAAAGCGCGTCTCTCGCATGGTGCACGCCCTCAAAATGGGCTGGATGAAG
ACCACTGAGGAAGTGGAACGCGAGAAGCAGGCCAAGCGCGGTCCCAAGTT
CTACATGCTGTGGGAAACGGACACCAGTCGGGAACACATGCGCCGCATCC
ACGATCCAGTCTCTGCGCCCAAACGCGACCTTCCCGGTCATGCCGAGTCC
TACAATCCACCGCCAGAGTATCTTTTCGATGCCAAGGAGACCAAGGAGTG
GCTTAAACTAAAGGACGAGCCACACAAGCGCAAGCTGCACTTCATGCCAC
AGAAGTTCAAGTCGCTGAGGGAGGTGCCCGCATACTCGAGATACCTTCGG
GAGCGTTTCCTTCGTTGCCTGGATCTTTACCTGTGTCCCCGTGCAAAGCG
TGTCAAGCTGAACATCGATGCCGAGTACCTTATCCCCAAGTTGCCCTCGC
CGCGTGACCTGCAACCCTTTCCCACGGTGGAGAGTATGGTTTACCGTGGC
CACACCGATCTGGTGCGGTCTGTTAGTGTGGAGCCCAAGGGAGAGTACCT
CGTCTCCGGTTCGGATGATAAAACCGTCAAGATTTGGGAAATTGCAACAG
GTCGTTGCATTCGCACAATCGAGACCGACGAAGTGGTACGCTGTGTGGCT
TGGTGTCCAAATCCCAAGCTGTCTATTATTGCGGTGGCCACTGGCAATCG
CTTGCTGCTCGTCAATCCTAAAGTGGGCGATAAGGTGCTGGTGAAGAAGA
CCGACGATCTCTTGGCTGAGGCGCCCAGTCAGGATGTCATTGAAAGTGAA
CGCATCAAGACGGCGGTGCAATGGTCAAATGCGGAAGCTGATGAGCAGGA
GAAGGGCGTCCGCGTAGTGATTACCCACTTCAAACCCATCCGACAGGTGA
CCTGGCACGGTCGTGGTGACTACTTGGCCACAGTGATGCCCGAAGGTGCT
AACCGCTCGGCTTTAATTCATCAGTTGTCCAAGCGGCGCTCACAGATTCC
ATTCTCCAAGAGCAAGGGTCTCATCCAATTCGTGCTCTTCCATCCGGTGA
AGCCCTGCTTCTTTGTGGCGACGCAACACAACATTCGCATTTATGATCTG
GTCAAACAAGAGCTTGTCAAGAAGCTGCTGACCAACTCCAAATGGATATC
GGGCATGTCTATTCATCCCAAGGGCGACAATCTGCTGGTGTCCACCTATG
ACAAAAAGATGCTCTGGTTCGATTTGGATCTGTCCACAAAGCCCTACCAG
ACCATGCGACTCCATCGCAATGCAGTTCGCAGTGTTGCTTTCCATCTTCG
ATATCCGCTCTTTGCTTCCGGCAGCGATGACCAGGCTGTGATCGTCTCCC
ATGGCATGGTCTATAATGACCTGCTGCAAAACCCTTTGATTGTGCCTCTC
AAGAAGCTGCAAACACACGAGAAACGCGATGAGTTTGGTGTGCTGGATGT
TAACTGGCATCCGGTGCAGCCATGGGTCTTCTCCACGGGCGCGGACAGTA
CCATCCGACTATACACGTAAAAGCTTTCTAGACCAT
BS15955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2355 | CG5033-PA | 501..2355 | 16..1870 | 9275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 569..2423 | 16..1870 | 9275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17790317..17791233 | 16..932 | 4585 | 100 | Plus |
| 2R | 25286936 | 2R | 17791297..17791784 | 933..1420 | 2440 | 100 | Plus |
| 2R | 25286936 | 2R | 17791844..17792140 | 1420..1716 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 17792204..17792357 | 1717..1870 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:41 has no hits.
BS15955.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:21 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RB | 621..2472 | 17..1868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:32 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 570..2421 | 17..1868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:04 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RB | 621..2472 | 17..1868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:02 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 570..2421 | 17..1868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:02 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17790318..17791233 | 17..932 | 100 | -> | Plus |
| 2R | 17791297..17791784 | 933..1420 | 100 | -> | Plus |
| 2R | 17791845..17792140 | 1421..1716 | 100 | -> | Plus |
| 2R | 17792204..17792355 | 1717..1868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:32 Download gff for
BS15955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13677823..13678738 | 17..932 | 100 | -> | Plus |
| arm_2R | 13678802..13679289 | 933..1420 | 100 | -> | Plus |
| arm_2R | 13679350..13679645 | 1421..1716 | 100 | -> | Plus |
| arm_2R | 13679709..13679860 | 1717..1868 | 100 | | Plus |
BS15955.3prime Sequence
882 bp (824 high quality bases) assembled on 2007-04-16
> BS15955.3prime
ATGGTCTAGAAAGCTTTTACGTGTATAGTCGGATGGTACTGTCCGCGCCC
GTGGAGAAGACCCATGGCTGCACCGGATGCCAGTTAACATCCAGCACACC
AAACTCATCGCGTTTCTCGTGTGTTTGCAGCTTCTTGAGAGGCACAATCA
AAGGGTTTTGCAGCAGGTCATTATAGACCATGCCATGGGAGACGATCACA
GCCTGGTCATCGCTGCCGGAAGCAAAGAGCGGATATCGAAGATGGAAAGC
AACACTGCGAACTGCATTGCGATGGAGTCGCATGGTCTGGTAGGGCTTTG
TGGACAGATCCAAATCGAACCAGAGCATCTTTTTGTCATAGGTGGACACC
AGCAGATTGTCGCCCTTGGGATGAATAGACATGCCCGATATCCATTTGGA
GTTGGTCAGCAGCTTCTTGACAAGCTCTTGTTTGACCAGATCATAAATGC
GAATGTTGTGTTGCGTCGCCACAAAGAAGCAGGGCTTCACCGGATGGAAG
AGCACGAATTGGATGAGACCCTTGCTCTTGGAGAATGGAATCTGTGAGCG
CCGCTTGGACAACTGATGAATTAAAGCCGAGCGGTTAGCACCTTCGGGCA
TCACTGTGGCCAAGTAGTCACCACGACCGTGCCAGGTCACCTGTCGGATG
GGTTTGAAGTGGGTAATCACTACGCGGACGCCCTTCTCCTGCTCATCAGC
TTCCGCATTTGACCATTGCACCGCCGTCTTGATGCGTTCACTTTCAATGA
CATCCTGACTGGGCGCCTCAGCCAAGAGATCGTCGGTCTTCTTCACCAGC
ACCTTATCGCCCACTTTAGGATTGACGAGCAGGCAGCGATTGCCAGTGGC
CACCGCAATAATAGACAGCTTGGGATTTGGAC
BS15955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 2355 | CG5033-RA | 1490..2355 | 882..17 | 4280 | 99.7 | Minus |
| CG5033-PB | 1854 | CG5033-RB | 989..1854 | 882..17 | 4280 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 1558..2423 | 882..17 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17791369..17791784 | 882..467 | 2050 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17791844..17792140 | 467..171 | 1485 | 100 | Minus |
| 2R | 25286936 | 2R | 17792204..17792357 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3351..3392 | 711..670 | 111 | 73.8 | Minus |
BS15955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:40 Download gff for
BS15955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PB | 989..1854 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:13 Download gff for
BS15955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 1558..2426 | 10..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:13 Download gff for
BS15955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 1558..2426 | 10..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:13 Download gff for
BS15955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17791369..17791784 | 467..882 | 99 | -> | Minus |
| 2R | 17791845..17792140 | 171..466 | 100 | -> | Minus |
| 2R | 17792204..17792360 | 10..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:13 Download gff for
BS15955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13678874..13679289 | 467..882 | 99 | -> | Minus |
| arm_2R | 13679350..13679645 | 171..466 | 100 | -> | Minus |
| arm_2R | 13679709..13679865 | 10..170 | 97 | | Minus |
BS15955.5prime Sequence
941 bp (837 high quality bases) assembled on 2007-04-16
> BS15955.5prime
GAAGTTATCAGTCGACATGCACTGGTACGACGAATACAAGCACATCGGTT
ACGACTGGGATGCCAAGAAGATTATTAAACCACCACAAGGAGATCAAATT
GATGAGTTCCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCGTCAA
GGATCCACTTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATTGCTC
TGATCAAGCGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGAAGAG
TATGAGCCCTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGCCCAT
CAAGAACGTACCCGACCACAAACGCTCTTTCCTGCCCTCAGTTTCCGAGA
AAAAGCGCGTCTCTCGCATGGTGCACGCCCTCAAAATGGGCTGGATGAAG
ACCACTGAGGAAGTGGAACGCGAGAAGCAGGCCAAGCGCGGTCCCAAGTT
CTACATGCTGTGGGAAACGGACACCAGTCGGGAACACATGCGCCGCATCC
ACGATCCAGTCTCTGCGCCCAAACGCGACCTTCCCGGTCATGCCGAGTCC
TACAATCCACCGCCAGAGTATCTTTTCGATGCCAAGGAGACCAAGGAGTG
GCTTAAACTAAAGGACGAGCCACACAAGCGCAAGCTGCACTTCATGCCAC
AGAAGTTCAAGTCGCTGAGGGAGGTGCCCGCATACTCGAGATACCTTCGG
GAGCGTTTCCTTCGTTGCCTGGATCTTTACCTGTGTCCCCGTGCAAAGCG
TGTCAAGCTGAACATCGATGCCGAGTACCTTATCCCCAAGTTGCCCTCGC
CGCGTGACCTGCAACCCTTTCCCACGGTGGAGAGTATGGTTTACCGTGGC
CACACCGATCTGGTGCGGTCTGTTAGTGTGGAGCCCAAGGGAGAGTACCT
CGTCTCCGGGTTCGATGATAAAACCGTCAAGATTTGGGAAA
BS15955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 2355 | CG5033-RA | 501..1426 | 16..941 | 4555 | 99.6 | Plus |
| CG5033-PB | 1854 | CG5033-RB | 1..925 | 17..941 | 4550 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 569..1494 | 16..941 | 4585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17790317..17791233 | 16..932 | 4540 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:26 has no hits.
BS15955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:41 Download gff for
BS15955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PA | 495..1423 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:54 Download gff for
BS15955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 563..1491 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:26 Download gff for
BS15955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 563..1491 | 9..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:26 Download gff for
BS15955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17790311..17791238 | 9..938 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:54 Download gff for
BS15955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13677816..13678743 | 9..938 | 98 | | Plus |
BS15955.pep Sequence
Translation from 16 to 1869
> BS15955.pep
MHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTG
QDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPD
HKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWE
TDTSREHMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKD
EPHKRKLHFMPQKFKSLREVPAYSRYLRERFLRCLDLYLCPRAKRVKLNI
DAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVRSVSVEPKGEYLVSGSD
DKTVKIWEIATGRCIRTIETDEVVRCVAWCPNPKLSIIAVATGNRLLLVN
PKVGDKVLVKKTDDLLAEAPSQDVIESERIKTAVQWSNAEADEQEKGVRV
VITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRSQIPFSKSK
GLIQFVLFHPVKPCFFVATQHNIRIYDLVKQELVKKLLTNSKWISGMSIH
PKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFA
SGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPV
QPWVFSTGADSTIRLYT*
BS15955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 784 | CG5033-PA | 168..784 | 1..617 | 3294 | 100 | Plus |
| Poc1-PA | 391 | CG10191-PA | 14..296 | 276..560 | 182 | 24.1 | Plus |
| Poc1-PB | 403 | CG10191-PB | 14..296 | 276..560 | 182 | 24.1 | Plus |
