Clone BS15956 Report

Search the DGRC for BS15956

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptSar1-RA
Protein status:BS15956.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15956.3prime Sequence

612 bp (612 high quality bases) assembled on 2007-04-16

> BS15956.3prime
ATGGTCTAGAAAGCTTTTAATCGATATACTGCGCCAGCCAACGGAAACCC
TCGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGG
ACGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCT
GATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGC
TTATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTC
ATCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCAC
GGTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAG
TCCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGT
GAAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGG
GCACATGCTGCGCCAGCTTATCATCTTTGAGCATATGCAAGAGTGTGGTT
TTGCCAGCATTATCCAGGCCCAGGAACAATAATTTGCCAGACTTTTTCCA
CAGACCCAGGTATCCCAGCACTCCGGTGAACCAGTCCCAGATGAACATGT
CGACTGATAACT

BS15956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7073-PA 582 sar1-RA 1..582 598..17 2910 100 Minus
CG7073-PD 582 sar1-RD 1..582 598..17 2910 100 Minus
CG7073-PC 582 sar1-RC 1..582 598..17 2910 100 Minus
CG7073-PE 582 sar1-RE 1..582 598..17 2910 100 Minus
CG7073-PB 468 sar1-RB 1..468 484..17 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..694 598..17 2910 100 Minus
Sar1-RC 1801 CG7073-RC 462..1043 598..17 2910 100 Minus
Sar1-RD 1552 CG7073-RD 213..794 598..17 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 370..133 1190 100 Minus
3R 32079331 3R 22358371..22358491 556..436 605 100 Minus
3R 32079331 3R 22359835..22359953 135..17 595 100 Minus
3R 32079331 3R 22358563..22358628 435..370 330 100 Minus
3R 32079331 3R 22357629..22357673 598..554 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:58:20 has no hits.

BS15956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:41 Download gff for BS15956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7073-PE 1..582 17..598 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:14 Download gff for BS15956.3prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 158..745 17..608 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:51 Download gff for BS15956.3prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 207..794 17..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:51 Download gff for BS15956.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22359525..22359760 134..369 100 -> Minus
3R 22357623..22357671 556..608 92 -> Minus
3R 22358372..22358491 436..555 100 -> Minus
3R 22358563..22358628 370..435 100 -> Minus
3R 22359837..22359953 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:14 Download gff for BS15956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183345..18183393 556..608 92 -> Minus
arm_3R 18184094..18184213 436..555 100 -> Minus
arm_3R 18184285..18184350 370..435 100 -> Minus
arm_3R 18185247..18185482 134..369 100 -> Minus
arm_3R 18185559..18185675 17..133 100   Minus

BS15956.5prime Sequence

612 bp (612 high quality bases) assembled on 2007-04-16

> BS15956.5prime
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAA
GCTTTCTAGACC

BS15956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7073-PA 582 sar1-RA 1..582 17..598 2910 100 Plus
CG7073-PD 582 sar1-RD 1..582 17..598 2910 100 Plus
CG7073-PC 582 sar1-RC 1..582 17..598 2910 100 Plus
CG7073-PE 582 sar1-RE 1..582 17..598 2910 100 Plus
CG7073-PB 468 sar1-RB 1..468 131..598 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..694 17..598 2910 100 Plus
Sar1-RC 1801 CG7073-RC 462..1043 17..598 2910 100 Plus
Sar1-RD 1552 CG7073-RD 213..794 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 245..482 1190 100 Plus
3R 32079331 3R 22358371..22358491 59..179 605 100 Plus
3R 32079331 3R 22359835..22359953 480..598 595 100 Plus
3R 32079331 3R 22358563..22358628 180..245 330 100 Plus
3R 32079331 3R 22357629..22357673 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:38:59 has no hits.

BS15956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for BS15956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7073-PE 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:16 Download gff for BS15956.5prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 158..745 7..598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:58 Download gff for BS15956.5prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 207..794 7..598 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:58 Download gff for BS15956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22359525..22359760 246..481 100 -> Plus
3R 22359837..22359953 482..598 100   Plus
3R 22357623..22357671 7..59 92 -> Plus
3R 22358372..22358491 60..179 100 -> Plus
3R 22358563..22358628 180..245 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:16 Download gff for BS15956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183345..18183393 7..59 92 -> Plus
arm_3R 18184094..18184213 60..179 100 -> Plus
arm_3R 18184285..18184350 180..245 100 -> Plus
arm_3R 18185247..18185482 246..481 100 -> Plus
arm_3R 18185559..18185675 482..598 100   Plus

BS15956.complete Sequence

614 bp assembled on 2007-05-07

GenBank Submission: FJ637993

> BS15956.complete
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAA
GCTTTCTAGACCAT

BS15956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 582 CG7073-PE 1..582 17..598 2910 100 Plus
Sar1-RC 582 CG7073-PC 1..582 17..598 2910 100 Plus
Sar1-RD 582 CG7073-PD 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..694 17..598 2910 100 Plus
Sar1-RC 1801 CG7073-RC 462..1043 17..598 2910 100 Plus
Sar1-RD 1552 CG7073-RD 213..794 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 245..482 1190 100 Plus
3R 32079331 3R 22358371..22358491 59..179 605 100 Plus
3R 32079331 3R 22359835..22359953 480..598 595 100 Plus
3R 32079331 3R 22358563..22358628 180..245 330 100 Plus
3R 32079331 3R 22357629..22357673 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:59:47 has no hits.

BS15956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:49 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RC 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:16 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RD 271..858 7..598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:16 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 169..743 22..596 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:49 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RD 271..858 7..598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:42 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 218..792 22..596 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:42 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22358372..22358491 60..179 100 -> Plus
3R 22358563..22358628 180..245 100 -> Plus
3R 22359525..22359760 246..481 100 -> Plus
3R 22359837..22359951 482..596 100   Plus
3R 22357634..22357671 22..59 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:16 Download gff for BS15956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183356..18183393 22..59 100 -> Plus
arm_3R 18184094..18184213 60..179 100 -> Plus
arm_3R 18184285..18184350 180..245 100 -> Plus
arm_3R 18185247..18185482 246..481 100 -> Plus
arm_3R 18185559..18185673 482..596 100   Plus

BS15956.pep Sequence

Translation from 16 to 597

> BS15956.pep
MFIWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVP
TLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDR
GRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNVFGLYQ
LTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWLAQYID*

BS15956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-PE 193 CG7073-PE 1..193 1..193 1031 100 Plus
Sar1-PC 193 CG7073-PC 1..193 1..193 1031 100 Plus
Sar1-PD 193 CG7073-PD 1..193 1..193 1031 100 Plus
Sar1-PA 193 CG7073-PA 1..193 1..193 1031 100 Plus
Arl1-PA 180 CG6025-PA 4..173 3..189 268 31.6 Plus