Clone Sequence Records
BS15956.3prime Sequence
612 bp (612 high quality bases) assembled on 2007-04-16
> BS15956.3prime
ATGGTCTAGAAAGCTTTTAATCGATATACTGCGCCAGCCAACGGAAACCC
TCGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGG
ACGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCT
GATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGC
TTATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTC
ATCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCAC
GGTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAG
TCCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGT
GAAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGG
GCACATGCTGCGCCAGCTTATCATCTTTGAGCATATGCAAGAGTGTGGTT
TTGCCAGCATTATCCAGGCCCAGGAACAATAATTTGCCAGACTTTTTCCA
CAGACCCAGGTATCCCAGCACTCCGGTGAACCAGTCCCAGATGAACATGT
CGACTGATAACT
BS15956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 1..582 | 598..17 | 2910 | 100 | Minus |
CG7073-PD | 582 | sar1-RD | 1..582 | 598..17 | 2910 | 100 | Minus |
CG7073-PC | 582 | sar1-RC | 1..582 | 598..17 | 2910 | 100 | Minus |
CG7073-PE | 582 | sar1-RE | 1..582 | 598..17 | 2910 | 100 | Minus |
CG7073-PB | 468 | sar1-RB | 1..468 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..694 | 598..17 | 2910 | 100 | Minus |
Sar1-RC | 1801 | CG7073-RC | 462..1043 | 598..17 | 2910 | 100 | Minus |
Sar1-RD | 1552 | CG7073-RD | 213..794 | 598..17 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 370..133 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 22358371..22358491 | 556..436 | 605 | 100 | Minus |
3R | 32079331 | 3R | 22359835..22359953 | 135..17 | 595 | 100 | Minus |
3R | 32079331 | 3R | 22358563..22358628 | 435..370 | 330 | 100 | Minus |
3R | 32079331 | 3R | 22357629..22357673 | 598..554 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:58:20 has no hits.
BS15956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:41 Download gff for
BS15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 1..582 | 17..598 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:14 Download gff for
BS15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 158..745 | 17..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:51 Download gff for
BS15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 207..794 | 17..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:51 Download gff for
BS15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22359525..22359760 | 134..369 | 100 | -> | Minus |
3R | 22357623..22357671 | 556..608 | 92 | -> | Minus |
3R | 22358372..22358491 | 436..555 | 100 | -> | Minus |
3R | 22358563..22358628 | 370..435 | 100 | -> | Minus |
3R | 22359837..22359953 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:14 Download gff for
BS15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183345..18183393 | 556..608 | 92 | -> | Minus |
arm_3R | 18184094..18184213 | 436..555 | 100 | -> | Minus |
arm_3R | 18184285..18184350 | 370..435 | 100 | -> | Minus |
arm_3R | 18185247..18185482 | 134..369 | 100 | -> | Minus |
arm_3R | 18185559..18185675 | 17..133 | 100 | | Minus |
BS15956.5prime Sequence
612 bp (612 high quality bases) assembled on 2007-04-16
> BS15956.5prime
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAA
GCTTTCTAGACC
BS15956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7073-PD | 582 | sar1-RD | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7073-PC | 582 | sar1-RC | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7073-PE | 582 | sar1-RE | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7073-PB | 468 | sar1-RB | 1..468 | 131..598 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..694 | 17..598 | 2910 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 462..1043 | 17..598 | 2910 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 213..794 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 245..482 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22358371..22358491 | 59..179 | 605 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359953 | 480..598 | 595 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 180..245 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22357629..22357673 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:38:59 has no hits.
BS15956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for
BS15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:16 Download gff for
BS15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 158..745 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:58 Download gff for
BS15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 207..794 | 7..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:58 Download gff for
BS15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22359525..22359760 | 246..481 | 100 | -> | Plus |
3R | 22359837..22359953 | 482..598 | 100 | | Plus |
3R | 22357623..22357671 | 7..59 | 92 | -> | Plus |
3R | 22358372..22358491 | 60..179 | 100 | -> | Plus |
3R | 22358563..22358628 | 180..245 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:16 Download gff for
BS15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183345..18183393 | 7..59 | 92 | -> | Plus |
arm_3R | 18184094..18184213 | 60..179 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 180..245 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 246..481 | 100 | -> | Plus |
arm_3R | 18185559..18185675 | 482..598 | 100 | | Plus |
BS15956.complete Sequence
614 bp assembled on 2007-05-07
GenBank Submission: FJ637993
> BS15956.complete
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAA
GCTTTCTAGACCAT
BS15956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 582 | CG7073-PE | 1..582 | 17..598 | 2910 | 100 | Plus |
Sar1-RC | 582 | CG7073-PC | 1..582 | 17..598 | 2910 | 100 | Plus |
Sar1-RD | 582 | CG7073-PD | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..694 | 17..598 | 2910 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 462..1043 | 17..598 | 2910 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 213..794 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 245..482 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22358371..22358491 | 59..179 | 605 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359953 | 480..598 | 595 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 180..245 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22357629..22357673 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:47 has no hits.
BS15956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:49 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RC | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:16 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 271..858 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:16 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 169..743 | 22..596 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:49 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 271..858 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:42 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 218..792 | 22..596 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:42 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358372..22358491 | 60..179 | 100 | -> | Plus |
3R | 22358563..22358628 | 180..245 | 100 | -> | Plus |
3R | 22359525..22359760 | 246..481 | 100 | -> | Plus |
3R | 22359837..22359951 | 482..596 | 100 | | Plus |
3R | 22357634..22357671 | 22..59 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:16 Download gff for
BS15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183356..18183393 | 22..59 | 100 | -> | Plus |
arm_3R | 18184094..18184213 | 60..179 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 180..245 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 246..481 | 100 | -> | Plus |
arm_3R | 18185559..18185673 | 482..596 | 100 | | Plus |
BS15956.pep Sequence
Translation from 16 to 597
> BS15956.pep
MFIWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVP
TLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDR
GRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNVFGLYQ
LTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWLAQYID*
BS15956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-PE | 193 | CG7073-PE | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PC | 193 | CG7073-PC | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PD | 193 | CG7073-PD | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PA | 193 | CG7073-PA | 1..193 | 1..193 | 1031 | 100 | Plus |
Arl1-PA | 180 | CG6025-PA | 4..173 | 3..189 | 268 | 31.6 | Plus |