Clone BS15957 Report

Search the DGRC for BS15957

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG9775-RA
Protein status:BS15957.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15957.3prime Sequence

866 bp (786 high quality bases) assembled on 2007-04-16

> BS15957.3prime
ATGGTCTAGAAAGCTTTTACTTCAGCAAGTAGTCCATCTCCGACTTAGTG
GTGGACATATACTGATCCAGTTCCATGTCAAGATCCTCGCGCTTAACCTC
TGGACGCTGTGGTTTGCCTGTAGGCTTACGACTACGACTGCGTCCCCGTC
GAACCTGTTGCTGCGGGCCACTTTTGACACCGTTTGTCGCCTTGACCTTC
GCGTTTTTGTCAGCTTTACCATTTCTGATGATCTTGCCCTTGGCAGCGCC
TGCACTGCGTCCGCGTCTCTGGCGAGGATTAGCCCGGCCCTGAACAGTAG
CGGCGATAGCGGCAGCAGCGACGGCGGCAGCACGATTGCGCGAGCGTGAG
CGACGAGCAGAAGCAGAATTGTTAACTGCCCCACTGCTAGAAGCAGCGTT
TCTTGCAACAGATCTTCTACGTGGTCGTCCTTGACGTCCGGCAATCGAGG
CGGAAACTCCCTTCTTTTGGGAAATCTGAGCACTACGACGCTTCTCGACC
CGTCCGCCTGCCACACCTCGAATTTGGCTTGGTGCCCGGCGCTGCGGTGG
GATCTTGGCCTGGTTGTTTCTCTGGCCGGTTCGCACGCCAAGGCGGTGCT
TGACTGAAAGCCGCTGTTTCACTGGAACTCGGCCCTGGGCGGAGCGATCG
CGATTGCGGCTCTGGGAACGCCCAATGCTGCGTCCACGGCTTTGGGAACG
TGCTCTGTCCACACGCTGTATTTGCGGGTGGCGCGAACGGGACTGAGAGC
GGGAACGTCCTCGTGGGGCTTGCTGCTGCTGTCGCTGACGACGCTCAACG
CGCTCGGCGGCACCGCCCACAGAAGGGCGGCGCTGTCCTAGCCGCTGCCG
AAATCCGCCTCCACCA

BS15957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-PA 1266 CG9775-RA 417..1266 866..17 4225 99.8 Minus
CG9775-PC 1266 CG9775-RC 417..1266 866..17 4225 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RE 1966 CG9775-RE 818..1668 866..16 4240 99.9 Minus
CG9775-RC 1740 CG9775-RC 592..1442 866..16 4240 99.9 Minus
CG9775-RA 1930 CG9775-RA 782..1632 866..16 4240 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4639018..4639470 414..866 2250 99.8 Plus
3R 32079331 3R 4638539..4638841 113..415 1500 99.7 Plus
3R 32079331 3R 4638308..4638411 16..119 520 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:53:56 has no hits.

BS15957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for BS15957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-PC 418..1266 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:56 Download gff for BS15957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 783..1632 16..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:39 Download gff for BS15957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 783..1632 16..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:39 Download gff for BS15957.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4638308..4638409 16..117 100 <- Plus
3R 4638544..4638839 118..413 100 <- Plus
3R 4639018..4639469 414..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:56 Download gff for BS15957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 464030..464131 16..117 100 <- Plus
arm_3R 464266..464561 118..413 100 <- Plus
arm_3R 464740..465191 414..865 99   Plus

BS15957.5prime Sequence

871 bp (771 high quality bases) assembled on 2007-04-16

> BS15957.5prime
GAAGTTATCAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTA
CGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCC
AGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAAT
GTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCG
TTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTC
AGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCC
CAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGC
GTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGC
AGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCG
GCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCG
TTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGC
TCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACG
TTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCG
ATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAG
CACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCC
ACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGG
TCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCGCC
TCGATTGCCGGACGTTCAGGA

BS15957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-PA 1266 CG9775-RA 1..849 17..865 4220 99.8 Plus
CG9775-PC 1266 CG9775-RC 1..849 17..865 4220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RE 1966 CG9775-RE 401..1250 16..865 4235 99.9 Plus
CG9775-RC 1740 CG9775-RC 175..1024 16..865 4235 99.9 Plus
CG9775-RA 1930 CG9775-RA 365..1214 16..865 4235 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4639038..4639557 865..346 2600 100 Minus
3R 32079331 3R 4640013..4640223 226..16 1040 99.5 Minus
3R 32079331 3R 4639633..4639752 346..227 600 100 Minus
Blast to na_te.dros performed 2015-02-05 02:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 4499..4567 28..95 108 63.8 Plus

BS15957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for BS15957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-PC 1..853 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:39 Download gff for BS15957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 358..1218 9..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:22 Download gff for BS15957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 358..1218 9..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:22 Download gff for BS15957.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4639033..4639557 346..870 99 <- Minus
3R 4639634..4639752 227..345 100 <- Minus
3R 4640013..4640227 9..226 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:39 Download gff for BS15957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 464755..465279 346..870 99 <- Minus
arm_3R 465356..465474 227..345 100 <- Minus
arm_3R 465735..465949 9..226 97   Minus

BS15957.complete Sequence

1298 bp assembled on 2007-05-07

GenBank Submission: FJ637994

> BS15957.complete
GAAGTTATCAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTA
CGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCC
AGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAAT
GTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCG
TTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTC
AGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCC
CAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGC
GTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGC
AGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCG
GCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCG
TTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGC
TCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACG
TTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCG
ATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAG
CACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCC
ACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGG
TCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCGCC
TCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATCTGTTGCAAGAAA
CGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTTCTGCTCGTCGCT
CACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCCGCTATCGCCGCT
ACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGGACGCAGTGCAGG
CGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTGACAAAAACGCGA
AGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAGCAACAGGTTCGA
CGGGGACGCAGTCGTAGTCGTAAGCCTACAGGCAAACCACAGCGTCCAGA
GGTTAAGCGCGAGGATCTTGACATGGAACTGGATCAGTATATGTCCACCA
CTAAGTCGGAGATGGACTACTTGCTGAAGTAAAAGCTTTCTAGACCAT

BS15957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RE 1266 CG9775-PE 1..1266 17..1282 6315 99.9 Plus
CG9775-RC 1266 CG9775-PC 1..1266 17..1282 6315 99.9 Plus
CG9775-RA 1266 CG9775-PA 1..1266 17..1282 6315 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RE 1966 CG9775-RE 401..1668 16..1283 6325 99.9 Plus
CG9775-RC 1740 CG9775-RC 175..1442 16..1283 6325 99.9 Plus
CG9775-RA 1930 CG9775-RA 365..1632 16..1283 6325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4639018..4639557 885..346 2700 100 Minus
3R 32079331 3R 4638539..4638841 1186..884 1500 99.7 Minus
3R 32079331 3R 4640013..4640223 226..16 1040 99.5 Minus
3R 32079331 3R 4639633..4639752 346..227 600 100 Minus
3R 32079331 3R 4638308..4638411 1283..1180 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:51:50 has no hits.

BS15957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:35 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 1..1266 17..1282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:35 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 127..1401 9..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:07 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 366..1629 17..1280 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:36 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 127..1401 9..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:52 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 366..1629 17..1280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:52 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4638311..4638409 1182..1280 100 <- Minus
3R 4638544..4638839 886..1181 100 <- Minus
3R 4639018..4639557 346..885 100 <- Minus
3R 4639634..4639752 227..345 100 <- Minus
3R 4640013..4640222 17..226 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:07 Download gff for BS15957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 464033..464131 1182..1280 100 <- Minus
arm_3R 464266..464561 886..1181 100 <- Minus
arm_3R 464740..465279 346..885 100 <- Minus
arm_3R 465356..465474 227..345 100 <- Minus
arm_3R 465735..465944 17..226 99   Minus

BS15957.pep Sequence

Translation from 16 to 1281

> BS15957.pep
MNTGISLNERFTQMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNS
RLLNEFKRLHTVQTALKLKRRSLRTTAVSGRGPRVAGVKSLRLAPNGKPI
RSNNVTRVATMRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQ
RRPSVGGAAERVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRG
RSIGRSQSRNRDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRA
PSQIRGVAGGRVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSS
GAVNNSASARRSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGK
IIRNGKADKNAKVKATNGVKSGPQQQVRRGRSRSRKPTGKPQRPEVKRED
LDMELDQYMSTTKSEMDYLLK*

BS15957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-PA 421 CG9775-PA 1..421 1..421 2079 100 Plus
CG9775-PE 421 CG9775-PE 1..421 1..421 2079 100 Plus
CG9775-PC 421 CG9775-PC 1..421 1..421 2079 100 Plus
CG9775-PD 315 CG9775-PD 1..282 111..392 1378 99.3 Plus
CG9915-PC 820 CG9915-PC 77..493 23..407 199 26.4 Plus