Clone Sequence Records
BS15957.3prime Sequence
866 bp (786 high quality bases) assembled on 2007-04-16
> BS15957.3prime
ATGGTCTAGAAAGCTTTTACTTCAGCAAGTAGTCCATCTCCGACTTAGTG
GTGGACATATACTGATCCAGTTCCATGTCAAGATCCTCGCGCTTAACCTC
TGGACGCTGTGGTTTGCCTGTAGGCTTACGACTACGACTGCGTCCCCGTC
GAACCTGTTGCTGCGGGCCACTTTTGACACCGTTTGTCGCCTTGACCTTC
GCGTTTTTGTCAGCTTTACCATTTCTGATGATCTTGCCCTTGGCAGCGCC
TGCACTGCGTCCGCGTCTCTGGCGAGGATTAGCCCGGCCCTGAACAGTAG
CGGCGATAGCGGCAGCAGCGACGGCGGCAGCACGATTGCGCGAGCGTGAG
CGACGAGCAGAAGCAGAATTGTTAACTGCCCCACTGCTAGAAGCAGCGTT
TCTTGCAACAGATCTTCTACGTGGTCGTCCTTGACGTCCGGCAATCGAGG
CGGAAACTCCCTTCTTTTGGGAAATCTGAGCACTACGACGCTTCTCGACC
CGTCCGCCTGCCACACCTCGAATTTGGCTTGGTGCCCGGCGCTGCGGTGG
GATCTTGGCCTGGTTGTTTCTCTGGCCGGTTCGCACGCCAAGGCGGTGCT
TGACTGAAAGCCGCTGTTTCACTGGAACTCGGCCCTGGGCGGAGCGATCG
CGATTGCGGCTCTGGGAACGCCCAATGCTGCGTCCACGGCTTTGGGAACG
TGCTCTGTCCACACGCTGTATTTGCGGGTGGCGCGAACGGGACTGAGAGC
GGGAACGTCCTCGTGGGGCTTGCTGCTGCTGTCGCTGACGACGCTCAACG
CGCTCGGCGGCACCGCCCACAGAAGGGCGGCGCTGTCCTAGCCGCTGCCG
AAATCCGCCTCCACCA
BS15957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-PA | 1266 | CG9775-RA | 417..1266 | 866..17 | 4225 | 99.8 | Minus |
CG9775-PC | 1266 | CG9775-RC | 417..1266 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RE | 1966 | CG9775-RE | 818..1668 | 866..16 | 4240 | 99.9 | Minus |
CG9775-RC | 1740 | CG9775-RC | 592..1442 | 866..16 | 4240 | 99.9 | Minus |
CG9775-RA | 1930 | CG9775-RA | 782..1632 | 866..16 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4639018..4639470 | 414..866 | 2250 | 99.8 | Plus |
3R | 32079331 | 3R | 4638539..4638841 | 113..415 | 1500 | 99.7 | Plus |
3R | 32079331 | 3R | 4638308..4638411 | 16..119 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:53:56 has no hits.
BS15957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for
BS15957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-PC | 418..1266 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:56 Download gff for
BS15957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 783..1632 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:39 Download gff for
BS15957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 783..1632 | 16..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:39 Download gff for
BS15957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638308..4638409 | 16..117 | 100 | <- | Plus |
3R | 4638544..4638839 | 118..413 | 100 | <- | Plus |
3R | 4639018..4639469 | 414..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:56 Download gff for
BS15957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 464030..464131 | 16..117 | 100 | <- | Plus |
arm_3R | 464266..464561 | 118..413 | 100 | <- | Plus |
arm_3R | 464740..465191 | 414..865 | 99 | | Plus |
BS15957.5prime Sequence
871 bp (771 high quality bases) assembled on 2007-04-16
> BS15957.5prime
GAAGTTATCAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTA
CGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCC
AGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAAT
GTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCG
TTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTC
AGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCC
CAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGC
GTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGC
AGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCG
GCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCG
TTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGC
TCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACG
TTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCG
ATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAG
CACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCC
ACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGG
TCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCGCC
TCGATTGCCGGACGTTCAGGA
BS15957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-PA | 1266 | CG9775-RA | 1..849 | 17..865 | 4220 | 99.8 | Plus |
CG9775-PC | 1266 | CG9775-RC | 1..849 | 17..865 | 4220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RE | 1966 | CG9775-RE | 401..1250 | 16..865 | 4235 | 99.9 | Plus |
CG9775-RC | 1740 | CG9775-RC | 175..1024 | 16..865 | 4235 | 99.9 | Plus |
CG9775-RA | 1930 | CG9775-RA | 365..1214 | 16..865 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4639038..4639557 | 865..346 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 4640013..4640223 | 226..16 | 1040 | 99.5 | Minus |
3R | 32079331 | 3R | 4639633..4639752 | 346..227 | 600 | 100 | Minus |
Blast to na_te.dros performed 2015-02-05 02:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 4499..4567 | 28..95 | 108 | 63.8 | Plus |
BS15957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:42 Download gff for
BS15957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-PC | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:39 Download gff for
BS15957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 358..1218 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:22 Download gff for
BS15957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 358..1218 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:22 Download gff for
BS15957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4639033..4639557 | 346..870 | 99 | <- | Minus |
3R | 4639634..4639752 | 227..345 | 100 | <- | Minus |
3R | 4640013..4640227 | 9..226 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:39 Download gff for
BS15957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 464755..465279 | 346..870 | 99 | <- | Minus |
arm_3R | 465356..465474 | 227..345 | 100 | <- | Minus |
arm_3R | 465735..465949 | 9..226 | 97 | | Minus |
BS15957.complete Sequence
1298 bp assembled on 2007-05-07
GenBank Submission: FJ637994
> BS15957.complete
GAAGTTATCAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTA
CGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCC
AGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAAT
GTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCG
TTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTC
AGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCC
CAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGC
GTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGC
AGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCG
GCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCG
TTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGC
TCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACG
TTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCG
ATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAG
CACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCC
ACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGG
TCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCGCC
TCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATCTGTTGCAAGAAA
CGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTTCTGCTCGTCGCT
CACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCCGCTATCGCCGCT
ACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGGACGCAGTGCAGG
CGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTGACAAAAACGCGA
AGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAGCAACAGGTTCGA
CGGGGACGCAGTCGTAGTCGTAAGCCTACAGGCAAACCACAGCGTCCAGA
GGTTAAGCGCGAGGATCTTGACATGGAACTGGATCAGTATATGTCCACCA
CTAAGTCGGAGATGGACTACTTGCTGAAGTAAAAGCTTTCTAGACCAT
BS15957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RE | 1266 | CG9775-PE | 1..1266 | 17..1282 | 6315 | 99.9 | Plus |
CG9775-RC | 1266 | CG9775-PC | 1..1266 | 17..1282 | 6315 | 99.9 | Plus |
CG9775-RA | 1266 | CG9775-PA | 1..1266 | 17..1282 | 6315 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RE | 1966 | CG9775-RE | 401..1668 | 16..1283 | 6325 | 99.9 | Plus |
CG9775-RC | 1740 | CG9775-RC | 175..1442 | 16..1283 | 6325 | 99.9 | Plus |
CG9775-RA | 1930 | CG9775-RA | 365..1632 | 16..1283 | 6325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4639018..4639557 | 885..346 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 4638539..4638841 | 1186..884 | 1500 | 99.7 | Minus |
3R | 32079331 | 3R | 4640013..4640223 | 226..16 | 1040 | 99.5 | Minus |
3R | 32079331 | 3R | 4639633..4639752 | 346..227 | 600 | 100 | Minus |
3R | 32079331 | 3R | 4638308..4638411 | 1283..1180 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:51:50 has no hits.
BS15957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:35 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 1..1266 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:35 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 127..1401 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:07 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 366..1629 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:36 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 127..1401 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:52 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 366..1629 | 17..1280 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:52 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638311..4638409 | 1182..1280 | 100 | <- | Minus |
3R | 4638544..4638839 | 886..1181 | 100 | <- | Minus |
3R | 4639018..4639557 | 346..885 | 100 | <- | Minus |
3R | 4639634..4639752 | 227..345 | 100 | <- | Minus |
3R | 4640013..4640222 | 17..226 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:07 Download gff for
BS15957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 464033..464131 | 1182..1280 | 100 | <- | Minus |
arm_3R | 464266..464561 | 886..1181 | 100 | <- | Minus |
arm_3R | 464740..465279 | 346..885 | 100 | <- | Minus |
arm_3R | 465356..465474 | 227..345 | 100 | <- | Minus |
arm_3R | 465735..465944 | 17..226 | 99 | | Minus |
BS15957.pep Sequence
Translation from 16 to 1281
> BS15957.pep
MNTGISLNERFTQMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNS
RLLNEFKRLHTVQTALKLKRRSLRTTAVSGRGPRVAGVKSLRLAPNGKPI
RSNNVTRVATMRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQ
RRPSVGGAAERVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRG
RSIGRSQSRNRDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRA
PSQIRGVAGGRVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSS
GAVNNSASARRSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGK
IIRNGKADKNAKVKATNGVKSGPQQQVRRGRSRSRKPTGKPQRPEVKRED
LDMELDQYMSTTKSEMDYLLK*
BS15957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-PA | 421 | CG9775-PA | 1..421 | 1..421 | 2079 | 100 | Plus |
CG9775-PE | 421 | CG9775-PE | 1..421 | 1..421 | 2079 | 100 | Plus |
CG9775-PC | 421 | CG9775-PC | 1..421 | 1..421 | 2079 | 100 | Plus |
CG9775-PD | 315 | CG9775-PD | 1..282 | 111..392 | 1378 | 99.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 77..493 | 23..407 | 199 | 26.4 | Plus |