Clone BS15959 Report

Search the DGRC for BS15959

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptJheh1-RA
Protein status:BS15959.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15959.3prime Sequence

929 bp (760 high quality bases) assembled on 2007-04-16

> BS15959.3prime
ATGGTCTAGAAAGCTTCTACAGAGTCTTAATTTTAAACTTACGTTCCACC
GTTTCGACAAAGTCTATAAAATCCTTGTATAGAACCTTTGGAACCTCTAG
AGCGGCAAAGTGCCCGCCCTTTTTGTGGTAAGTGCTGTGCACTAGGTTCG
TGTACTTATCCTTCAACTGGACATCCAGGAACTGCATAATGTCGCTCTTG
AAACGGGCACATCCAGTTGGCACTCGGGTGGGAACCCGATCCAGGTGCAG
GTCCCGCTGTGCCTGGGCATACTGCTCGGCATAGAGACGCTGGGAGGTGG
TAATCGAATTGGTCAGGTAGTAGATCATCAGGTTGTCCAGCAGGGCATCC
ATTTTGTAGCGCTTAGTGAGTCCTCCATCTGGCAGAGATCGGTAGCTGGG
ATTTGTCCACGTGGAGAACTTCTCCAGAATGTAGGCGGCCAGACCCACTG
GGTTATCGGTGAGGGCGGCTCCGATGGTGTCCGGTTTGGTGGCCTGGATG
TGGAAGTAGCCACTCTCCTCCATTAGGTATCTCATCTCGTTAGACTTGGG
AAAGAAGAAATCTTCAAAGCCAGAGGGCACAAACAAACTGGGCCAAAATT
CGGCCACTAAACCCTTAGCCAGCGACTTCGGACTCAAATTGTTGCACATG
TTCGAGTGGTAGCCCAGCACGTTTTCCGGATACAAGGTGGCAATGTTGCT
GCCAATAATGCTGCCCCAGTCTCCACCCTGGATAAAGAATTTGTTGTATC
CCAAACGCAGCATAAGATTCCTCATCATCACCGCCACTTGAGCGGGACCC
AGTCCTTTTCTGGAGGTGCCCTGTGACCAGCCATAACCTGGTAAACTCGG
GACCACGACGTTAAAGATGTACTTGTTATTATTGTCCAGATTGGTCTGAT
GCAGCAAATGTATGAAATCGTAAAACTCC

BS15959.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15101-PA 1425 Jheh1-RA 513..1425 929..17 4540 99.8 Minus
CG15106-PA 1407 Jheh3-RA 703..749 724..678 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-RA 1486 CG15101-RA 547..1460 929..16 4555 99.9 Minus
Jheh3-RA 1576 CG15106-RA 802..935 777..644 340 83.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18853460..18854267 16..823 4040 100 Plus
2R 25286936 2R 18854322..18854431 820..929 535 99.1 Plus
2R 25286936 2R 18861016..18861149 644..777 340 83.6 Plus
2R 25286936 2R 18856147..18856396 276..525 230 72.8 Plus
Blast to na_te.dros performed 2015-02-13 07:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 3625..3671 2..48 118 72.3 Plus

BS15959.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:43 Download gff for BS15959.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15101-PA 513..1425 17..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:00 Download gff for BS15959.3prime
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 547..1464 11..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:21 Download gff for BS15959.3prime
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 547..1464 11..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:21 Download gff for BS15959.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18853456..18854264 11..820 99 <- Plus
2R 18854323..18854431 821..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:00 Download gff for BS15959.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14740961..14741769 11..820 99 <- Plus
arm_2R 14741828..14741936 821..929 99   Plus

BS15959.5prime Sequence

840 bp (802 high quality bases) assembled on 2007-04-16

> BS15959.5prime
GAAGTTATCAGTCGACATGGGTGTCACTGTTAAAATTCTGGTCTTGATAC
TGGCCATTGCCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCG
GACTTGCCCGCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGC
GCAGCCCAAGGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAG
GCAATAGGCTTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGT
CTCAATCGCACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGA
GTACGGATTCAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCG
ATGACTACCTGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTC
AATCACTTCACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCT
GATGGTTTATGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGC
TGCTCCACGGATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACAT
TTGCTGCATCAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGT
CGTGGTTCCGAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAA
AAGGACTGGGTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTG
CGTTTGGGATACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCAT
TATTGGCAGCAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACC
ACTCGAACATGTGCAACAATTTGAGTCCGAAGTCGCTGGC

BS15959.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15101-PA 1425 Jheh1-RA 1..824 17..840 4120 100 Plus
CG15106-PA 1407 Jheh3-RA 703..749 734..780 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-RA 1486 CG15101-RA 35..858 17..840 4120 100 Plus
Jheh3-RA 1576 CG15106-RA 802..935 681..814 340 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18854322..18854534 638..426 1065 100 Minus
2R 25286936 2R 18854844..18855053 226..17 1050 100 Minus
2R 25286936 2R 18854062..18854267 840..635 1030 100 Minus
2R 25286936 2R 18854587..18854789 427..225 1015 100 Minus
2R 25286936 2R 18861016..18861149 814..681 340 83.6 Minus
Blast to na_te.dros performed on 2015-02-11 22:59:08 has no hits.

BS15959.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:44 Download gff for BS15959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15101-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:21 Download gff for BS15959.5prime
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 35..858 17..840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:23 Download gff for BS15959.5prime
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 35..858 17..840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:23 Download gff for BS15959.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18854844..18855053 17..226 100   Minus
2R 18854062..18854264 638..840 100 <- Minus
2R 18854323..18854533 427..637 100 <- Minus
2R 18854588..18854787 227..426 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:21 Download gff for BS15959.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14741567..14741769 638..840 100 <- Minus
arm_2R 14741828..14742038 427..637 100 <- Minus
arm_2R 14742093..14742292 227..426 100 <- Minus
arm_2R 14742349..14742558 17..226 100   Minus

BS15959.complete Sequence

1457 bp assembled on 2007-05-07

GenBank Submission: FJ637995

> BS15959.complete
GAAGTTATCAGTCGACATGGGTGTCACTGTTAAAATTCTGGTCTTGATAC
TGGCCATTGCCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCG
GACTTGCCCGCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGC
GCAGCCCAAGGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAG
GCAATAGGCTTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGT
CTCAATCGCACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGA
GTACGGATTCAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCG
ATGACTACCTGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTC
AATCACTTCACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCT
GATGGTTTATGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGC
TGCTCCACGGATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACAT
TTGCTGCATCAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGT
CGTGGTTCCGAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAA
AAGGACTGGGTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTG
CGTTTGGGATACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCAT
TATTGGCAGCAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACC
ACTCGAACATGTGCAACAATTTGAGTCCGAAGTCGCTGGCTAAGGGTTTA
GTGGCCGAATTTTGGCCCAGTTTGTTTGTGCCCTCTGGCTTTGAAGATTT
CTTCTTTCCCAAGTCTAACGAGATGAGATACCTAATGGAGGAGAGTGGCT
ACTTCCACATCCAGGCCACCAAACCGGACACCATCGGAGCCGCCCTCACC
GATAACCCAGTGGGTCTGGCCGCCTACATTCTGGAGAAGTTCTCCACGTG
GACAAATCCCAGCTACCGATCTCTGCCAGATGGAGGACTCACTAAGCGCT
ACAAAATGGATGCCCTGCTGGACAACCTGATGATCTACTACCTGACCAAT
TCGATTACCACCTCCCAGCGTCTCTATGCCGAGCAGTATGCCCAGGCACA
GCGGGACCTGCACCTGGATCGGGTTCCCACCCGAGTGCCAACTGGATGTG
CCCGTTTCAAGAGCGACATTATGCAGTTCCTGGATGTCCAGTTGAAGGAT
AAGTACACGAACCTAGTGCACAGCACTTACCACAAAAAGGGCGGGCACTT
TGCCGCTCTAGAGGTTCCAAAGGTTCTATACAAGGATTTTATAGACTTTG
TCGAAACGGTGGAACGTAAGTTTAAAATTAAGACTCTGTAGAAGCTTTCT
AGACCAT

BS15959.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-RA 1425 CG15101-PA 1..1425 17..1441 7125 100 Plus
Jheh3-RA 1407 CG15106-PA 650..783 681..814 340 83.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-RA 1486 CG15101-RA 35..1460 17..1442 7130 100 Plus
Jheh3-RA 1576 CG15106-RA 802..935 681..814 340 83.6 Plus
Jheh2-RD 1926 CG15102-RD 1297..1546 933..1182 230 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18853460..18854267 1442..635 4040 100 Minus
2R 25286936 2R 18854322..18854534 638..426 1065 100 Minus
2R 25286936 2R 18854844..18855053 226..17 1050 100 Minus
2R 25286936 2R 18854587..18854789 427..225 1015 100 Minus
2R 25286936 2R 18861016..18861149 814..681 340 83.6 Minus
2R 25286936 2R 18856147..18856396 1182..933 230 72.8 Minus
Blast to na_te.dros performed 2014-11-27 16:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 3625..3671 1456..1410 118 72.3 Minus

BS15959.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:34 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 17..1441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:34 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 57..1486 17..1447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:54 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 35..1459 17..1441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:34 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 57..1486 17..1447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:33 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 35..1459 17..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:33 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18854323..18854533 427..637 100 <- Minus
2R 18854588..18854787 227..426 100 <- Minus
2R 18854844..18855053 17..226 100   Minus
2R 18853461..18854264 638..1441 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:54 Download gff for BS15959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14742093..14742292 227..426 100 <- Minus
arm_2R 14742349..14742558 17..226 100   Minus
arm_2R 14740966..14741769 638..1441 100 <- Minus
arm_2R 14741828..14742038 427..637 100 <- Minus

BS15959.pep Sequence

Translation from 16 to 1440

> BS15959.pep
MGVTVKILVLILAIAGGLVYRNVTQLWADLPAPKLDPQEWWGDEAQPKDY
EAYLKNNSEVIGNRLSYPDKTIADLKERLNRTLRLTPPLEGVAFEYGFNT
NYLKEVVEYWRDDYLPRWREREVFLWQFNHFTTDIQGLRTHFLHLMVYDD
NKVGKKHYPVLLLHGWPGSVREFYDFIHLLHQTNLDNNNKYIFNVVVPSL
PGYGWSQGTSRKGLGPAQVAVMMRNLMLRLGYNKFFIQGGDWGSIIGSNI
ATLYPENVLGYHSNMCNNLSPKSLAKGLVAEFWPSLFVPSGFEDFFFPKS
NEMRYLMEESGYFHIQATKPDTIGAALTDNPVGLAAYILEKFSTWTNPSY
RSLPDGGLTKRYKMDALLDNLMIYYLTNSITTSQRLYAEQYAQAQRDLHL
DRVPTRVPTGCARFKSDIMQFLDVQLKDKYTNLVHSTYHKKGGHFAALEV
PKVLYKDFIDFVETVERKFKIKTL*

BS15959.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-PA 474 CG15101-PA 1..474 1..474 2546 100 Plus
Jheh2-PD 463 CG15102-PD 7..458 6..463 1286 54.7 Plus
Jheh2-PA 463 CG15102-PA 7..458 6..463 1286 54.7 Plus
Jheh3-PA 468 CG15106-PA 9..457 10..462 1221 53 Plus