Clone Sequence Records
BS15959.3prime Sequence
929 bp (760 high quality bases) assembled on 2007-04-16
> BS15959.3prime
ATGGTCTAGAAAGCTTCTACAGAGTCTTAATTTTAAACTTACGTTCCACC
GTTTCGACAAAGTCTATAAAATCCTTGTATAGAACCTTTGGAACCTCTAG
AGCGGCAAAGTGCCCGCCCTTTTTGTGGTAAGTGCTGTGCACTAGGTTCG
TGTACTTATCCTTCAACTGGACATCCAGGAACTGCATAATGTCGCTCTTG
AAACGGGCACATCCAGTTGGCACTCGGGTGGGAACCCGATCCAGGTGCAG
GTCCCGCTGTGCCTGGGCATACTGCTCGGCATAGAGACGCTGGGAGGTGG
TAATCGAATTGGTCAGGTAGTAGATCATCAGGTTGTCCAGCAGGGCATCC
ATTTTGTAGCGCTTAGTGAGTCCTCCATCTGGCAGAGATCGGTAGCTGGG
ATTTGTCCACGTGGAGAACTTCTCCAGAATGTAGGCGGCCAGACCCACTG
GGTTATCGGTGAGGGCGGCTCCGATGGTGTCCGGTTTGGTGGCCTGGATG
TGGAAGTAGCCACTCTCCTCCATTAGGTATCTCATCTCGTTAGACTTGGG
AAAGAAGAAATCTTCAAAGCCAGAGGGCACAAACAAACTGGGCCAAAATT
CGGCCACTAAACCCTTAGCCAGCGACTTCGGACTCAAATTGTTGCACATG
TTCGAGTGGTAGCCCAGCACGTTTTCCGGATACAAGGTGGCAATGTTGCT
GCCAATAATGCTGCCCCAGTCTCCACCCTGGATAAAGAATTTGTTGTATC
CCAAACGCAGCATAAGATTCCTCATCATCACCGCCACTTGAGCGGGACCC
AGTCCTTTTCTGGAGGTGCCCTGTGACCAGCCATAACCTGGTAAACTCGG
GACCACGACGTTAAAGATGTACTTGTTATTATTGTCCAGATTGGTCTGAT
GCAGCAAATGTATGAAATCGTAAAACTCC
BS15959.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15101-PA | 1425 | Jheh1-RA | 513..1425 | 929..17 | 4540 | 99.8 | Minus |
CG15106-PA | 1407 | Jheh3-RA | 703..749 | 724..678 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh1-RA | 1486 | CG15101-RA | 547..1460 | 929..16 | 4555 | 99.9 | Minus |
Jheh3-RA | 1576 | CG15106-RA | 802..935 | 777..644 | 340 | 83.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18853460..18854267 | 16..823 | 4040 | 100 | Plus |
2R | 25286936 | 2R | 18854322..18854431 | 820..929 | 535 | 99.1 | Plus |
2R | 25286936 | 2R | 18861016..18861149 | 644..777 | 340 | 83.6 | Plus |
2R | 25286936 | 2R | 18856147..18856396 | 276..525 | 230 | 72.8 | Plus |
Blast to na_te.dros performed 2015-02-13 07:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3625..3671 | 2..48 | 118 | 72.3 | Plus |
BS15959.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:43 Download gff for
BS15959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15101-PA | 513..1425 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:00 Download gff for
BS15959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 547..1464 | 11..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:21 Download gff for
BS15959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 547..1464 | 11..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:21 Download gff for
BS15959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18853456..18854264 | 11..820 | 99 | <- | Plus |
2R | 18854323..18854431 | 821..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:00 Download gff for
BS15959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14740961..14741769 | 11..820 | 99 | <- | Plus |
arm_2R | 14741828..14741936 | 821..929 | 99 | | Plus |
BS15959.5prime Sequence
840 bp (802 high quality bases) assembled on 2007-04-16
> BS15959.5prime
GAAGTTATCAGTCGACATGGGTGTCACTGTTAAAATTCTGGTCTTGATAC
TGGCCATTGCCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCG
GACTTGCCCGCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGC
GCAGCCCAAGGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAG
GCAATAGGCTTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGT
CTCAATCGCACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGA
GTACGGATTCAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCG
ATGACTACCTGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTC
AATCACTTCACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCT
GATGGTTTATGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGC
TGCTCCACGGATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACAT
TTGCTGCATCAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGT
CGTGGTTCCGAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAA
AAGGACTGGGTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTG
CGTTTGGGATACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCAT
TATTGGCAGCAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACC
ACTCGAACATGTGCAACAATTTGAGTCCGAAGTCGCTGGC
BS15959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15101-PA | 1425 | Jheh1-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
CG15106-PA | 1407 | Jheh3-RA | 703..749 | 734..780 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh1-RA | 1486 | CG15101-RA | 35..858 | 17..840 | 4120 | 100 | Plus |
Jheh3-RA | 1576 | CG15106-RA | 802..935 | 681..814 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18854322..18854534 | 638..426 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 18854844..18855053 | 226..17 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 18854062..18854267 | 840..635 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 18854587..18854789 | 427..225 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 18861016..18861149 | 814..681 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:59:08 has no hits.
BS15959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:44 Download gff for
BS15959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15101-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:21 Download gff for
BS15959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 35..858 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:23 Download gff for
BS15959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 35..858 | 17..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:23 Download gff for
BS15959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18854844..18855053 | 17..226 | 100 | | Minus |
2R | 18854062..18854264 | 638..840 | 100 | <- | Minus |
2R | 18854323..18854533 | 427..637 | 100 | <- | Minus |
2R | 18854588..18854787 | 227..426 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:21 Download gff for
BS15959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14741567..14741769 | 638..840 | 100 | <- | Minus |
arm_2R | 14741828..14742038 | 427..637 | 100 | <- | Minus |
arm_2R | 14742093..14742292 | 227..426 | 100 | <- | Minus |
arm_2R | 14742349..14742558 | 17..226 | 100 | | Minus |
BS15959.complete Sequence
1457 bp assembled on 2007-05-07
GenBank Submission: FJ637995
> BS15959.complete
GAAGTTATCAGTCGACATGGGTGTCACTGTTAAAATTCTGGTCTTGATAC
TGGCCATTGCCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCG
GACTTGCCCGCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGC
GCAGCCCAAGGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAG
GCAATAGGCTTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGT
CTCAATCGCACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGA
GTACGGATTCAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCG
ATGACTACCTGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTC
AATCACTTCACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCT
GATGGTTTATGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGC
TGCTCCACGGATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACAT
TTGCTGCATCAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGT
CGTGGTTCCGAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAA
AAGGACTGGGTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTG
CGTTTGGGATACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCAT
TATTGGCAGCAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACC
ACTCGAACATGTGCAACAATTTGAGTCCGAAGTCGCTGGCTAAGGGTTTA
GTGGCCGAATTTTGGCCCAGTTTGTTTGTGCCCTCTGGCTTTGAAGATTT
CTTCTTTCCCAAGTCTAACGAGATGAGATACCTAATGGAGGAGAGTGGCT
ACTTCCACATCCAGGCCACCAAACCGGACACCATCGGAGCCGCCCTCACC
GATAACCCAGTGGGTCTGGCCGCCTACATTCTGGAGAAGTTCTCCACGTG
GACAAATCCCAGCTACCGATCTCTGCCAGATGGAGGACTCACTAAGCGCT
ACAAAATGGATGCCCTGCTGGACAACCTGATGATCTACTACCTGACCAAT
TCGATTACCACCTCCCAGCGTCTCTATGCCGAGCAGTATGCCCAGGCACA
GCGGGACCTGCACCTGGATCGGGTTCCCACCCGAGTGCCAACTGGATGTG
CCCGTTTCAAGAGCGACATTATGCAGTTCCTGGATGTCCAGTTGAAGGAT
AAGTACACGAACCTAGTGCACAGCACTTACCACAAAAAGGGCGGGCACTT
TGCCGCTCTAGAGGTTCCAAAGGTTCTATACAAGGATTTTATAGACTTTG
TCGAAACGGTGGAACGTAAGTTTAAAATTAAGACTCTGTAGAAGCTTTCT
AGACCAT
BS15959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh1-RA | 1425 | CG15101-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Jheh3-RA | 1407 | CG15106-PA | 650..783 | 681..814 | 340 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh1-RA | 1486 | CG15101-RA | 35..1460 | 17..1442 | 7130 | 100 | Plus |
Jheh3-RA | 1576 | CG15106-RA | 802..935 | 681..814 | 340 | 83.6 | Plus |
Jheh2-RD | 1926 | CG15102-RD | 1297..1546 | 933..1182 | 230 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18853460..18854267 | 1442..635 | 4040 | 100 | Minus |
2R | 25286936 | 2R | 18854322..18854534 | 638..426 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 18854844..18855053 | 226..17 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 18854587..18854789 | 427..225 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 18861016..18861149 | 814..681 | 340 | 83.6 | Minus |
2R | 25286936 | 2R | 18856147..18856396 | 1182..933 | 230 | 72.8 | Minus |
Blast to na_te.dros performed 2014-11-27 16:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3625..3671 | 1456..1410 | 118 | 72.3 | Minus |
BS15959.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:34 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 1..1425 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:34 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 57..1486 | 17..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:54 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 35..1459 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:34 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 57..1486 | 17..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:33 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh1-RA | 35..1459 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:33 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18854323..18854533 | 427..637 | 100 | <- | Minus |
2R | 18854588..18854787 | 227..426 | 100 | <- | Minus |
2R | 18854844..18855053 | 17..226 | 100 | | Minus |
2R | 18853461..18854264 | 638..1441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:54 Download gff for
BS15959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14742093..14742292 | 227..426 | 100 | <- | Minus |
arm_2R | 14742349..14742558 | 17..226 | 100 | | Minus |
arm_2R | 14740966..14741769 | 638..1441 | 100 | <- | Minus |
arm_2R | 14741828..14742038 | 427..637 | 100 | <- | Minus |
BS15959.pep Sequence
Translation from 16 to 1440
> BS15959.pep
MGVTVKILVLILAIAGGLVYRNVTQLWADLPAPKLDPQEWWGDEAQPKDY
EAYLKNNSEVIGNRLSYPDKTIADLKERLNRTLRLTPPLEGVAFEYGFNT
NYLKEVVEYWRDDYLPRWREREVFLWQFNHFTTDIQGLRTHFLHLMVYDD
NKVGKKHYPVLLLHGWPGSVREFYDFIHLLHQTNLDNNNKYIFNVVVPSL
PGYGWSQGTSRKGLGPAQVAVMMRNLMLRLGYNKFFIQGGDWGSIIGSNI
ATLYPENVLGYHSNMCNNLSPKSLAKGLVAEFWPSLFVPSGFEDFFFPKS
NEMRYLMEESGYFHIQATKPDTIGAALTDNPVGLAAYILEKFSTWTNPSY
RSLPDGGLTKRYKMDALLDNLMIYYLTNSITTSQRLYAEQYAQAQRDLHL
DRVPTRVPTGCARFKSDIMQFLDVQLKDKYTNLVHSTYHKKGGHFAALEV
PKVLYKDFIDFVETVERKFKIKTL*
BS15959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh1-PA | 474 | CG15101-PA | 1..474 | 1..474 | 2546 | 100 | Plus |
Jheh2-PD | 463 | CG15102-PD | 7..458 | 6..463 | 1286 | 54.7 | Plus |
Jheh2-PA | 463 | CG15102-PA | 7..458 | 6..463 | 1286 | 54.7 | Plus |
Jheh3-PA | 468 | CG15106-PA | 9..457 | 10..462 | 1221 | 53 | Plus |