Clone BS15961 Report

Search the DGRC for BS15961

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG30002-RA
Protein status:BS15961.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15961.3prime Sequence

642 bp (642 high quality bases) assembled on 2007-04-16

> BS15961.3prime
ATGGTCTAGAAAGCTTTTAAACATCCGAGAATTCTGCCATCTTTTCAAGT
ATCCAGGGCATATAGGTGGGTACATCCATGTAGTAGGCCTTGTGACCAGC
ACCGCAGTTTTGGCTTCCAGTGCTGACCACACCAAATTGTACGGCTCGAT
CCTTGCCAAACAACGTGGTCTTCCATAAGAGCGGTCCACCGGAGTCCCCA
TTGCATGTGTCCACATAATCTCCACTGGCGCAGAGGAACGAAGTATCCCT
GCCGTCGGTGCACTTCTCAGTTCTTATATCCACCTCCATTGTACTGTTGG
CATAGCGTAGACTCTCCGTTTTTCCCCAGCCCACCGCCATGAAGCGTTGT
CCCAGCTGCAAGGTAAACGCCAAGAGTTCGTCGGTCAGGGGCAGGCATAT
GGGTCGTATGTGATCTTTAAAGACCACTTTCTTGTTTAGTTTTATCAGGG
CAATATCATACCCGGGATAAAAGAGGTTAAACTCCTCGTGAAGAATCCAC
TTGTCGATGGTAAACTCCTCCACGGGCGGAGCGCAAACCCGTTCATAATT
GTAGGTGGTGCAGTCACTTGTGGAACTAAGGTCGAGCTCTCCCAGCCACA
CTCTAATCTCCTTAGATCGGGGACACATGTCGACTGATAACT

BS15961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PA 612 CG30002-RA 1..612 628..17 3060 100 Minus
CG1773-PA 954 CG1773-RA 325..629 628..324 1100 94.4 Minus
CG1773-PA 954 CG1773-RA 652..905 301..48 920 94.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..959 628..17 3060 100 Minus
CG1773-RA 1123 CG1773-RA 350..961 628..16 2410 93 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705534 416..17 2000 100 Minus
2R 25286936 2R 9707019..9707412 416..23 1475 91.6 Minus
2R 25286936 2R 9704871..9705064 608..415 970 100 Minus
2R 25286936 2R 9706755..9706948 608..415 835 95.4 Minus
Blast to na_te.dros performed on 2015-02-13 01:39:12 has no hits.

BS15961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:45 Download gff for BS15961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:18 Download gff for BS15961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..959 17..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:57 Download gff for BS15961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..959 17..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:57 Download gff for BS15961.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9704782..9704806 609..633 92 -> Minus
2R 9704871..9705064 415..608 100 -> Minus
2R 9705137..9705534 17..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:18 Download gff for BS15961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592287..5592311 609..633 92 -> Minus
arm_2R 5592376..5592569 415..608 100 -> Minus
arm_2R 5592642..5593039 17..414 100   Minus

BS15961.5prime Sequence

642 bp (642 high quality bases) assembled on 2007-04-16

> BS15961.5prime
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTTAAAAGCTTTCTAGACC

BS15961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PA 612 CG30002-RA 1..612 17..628 3060 100 Plus
CG1773-PA 954 CG1773-RA 325..629 17..321 1100 94.4 Plus
CG1773-PA 954 CG1773-RA 652..905 344..597 920 94.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..959 17..628 3060 100 Plus
CG1773-RA 1123 CG1773-RA 350..961 17..629 2410 93 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705534 229..628 2000 100 Plus
2R 25286936 2R 9707019..9707412 229..622 1475 91.6 Plus
2R 25286936 2R 9704871..9705064 37..230 970 100 Plus
2R 25286936 2R 9706755..9706948 37..230 835 95.4 Plus
Blast to na_te.dros performed on 2015-02-05 02:29:14 has no hits.

BS15961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:45 Download gff for BS15961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:44 Download gff for BS15961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..959 12..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:26 Download gff for BS15961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..959 12..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:26 Download gff for BS15961.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9705137..9705534 231..628 100   Plus
2R 9704782..9704806 12..36 92 -> Plus
2R 9704871..9705064 37..230 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:44 Download gff for BS15961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592287..5592311 12..36 92 -> Plus
arm_2R 5592376..5592569 37..230 100 -> Plus
arm_2R 5592642..5593039 231..628 100   Plus

BS15961.complete Sequence

644 bp assembled on 2007-05-07

GenBank Submission: FJ637996

> BS15961.complete
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTTAAAAGCTTTCTAGACCAT

BS15961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 936 CG30002-PB 325..936 17..628 3060 100 Plus
CG1773-RA 954 CG1773-PA 325..930 17..622 2400 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..959 17..628 3060 100 Plus
CG1773-RA 1123 CG1773-RA 350..955 17..622 2400 93.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705534 229..628 2000 100 Plus
2R 25286936 2R 9707019..9707412 229..622 1475 91.6 Plus
2R 25286936 2R 9704871..9705064 37..230 970 100 Plus
2R 25286936 2R 9706755..9706948 37..230 835 95.4 Plus
Blast to na_te.dros performed on 2014-11-27 08:01:16 has no hits.

BS15961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:06 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:07 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 400..1016 12..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:20 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 348..957 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:06 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 400..1016 12..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:27 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 348..957 17..626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:27 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9704871..9705064 37..230 100 -> Plus
2R 9705137..9705532 231..626 100   Plus
2R 9704787..9704806 17..36 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:20 Download gff for BS15961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592292..5592311 17..36 100 -> Plus
arm_2R 5592376..5592569 37..230 100 -> Plus
arm_2R 5592642..5593037 231..626 100   Plus

BS15961.pep Sequence

Translation from 16 to 627

> BS15961.pep
MCPRSKEIRVWLGELDLSSTSDCTTYNYERVCAPPVEEFTIDKWILHEEF
NLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQLGQRFMAVG
WGKTESLRYANSTMEVDIRTEKCTDGRDTSFLCASGDYVDTCNGDSGGPL
LWKTTLFGKDRAVQFGVVSTGSQNCGAGHKAYYMDVPTYMPWILEKMAEF
SDV*

BS15961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PB 311 CG30002-PB 109..311 1..203 1105 100 Plus
CG1773-PA 317 CG1773-PA 109..310 1..202 1000 90.1 Plus
grass-PA 335 CG5896-PA 132..331 7..198 307 37.4 Plus
grass-PB 377 CG5896-PB 174..373 7..198 307 37.4 Plus
CG5909-PA 381 CG5909-PA 183..380 8..197 286 34.5 Plus