Clone Sequence Records
BS15961.3prime Sequence
642 bp (642 high quality bases) assembled on 2007-04-16
> BS15961.3prime
ATGGTCTAGAAAGCTTTTAAACATCCGAGAATTCTGCCATCTTTTCAAGT
ATCCAGGGCATATAGGTGGGTACATCCATGTAGTAGGCCTTGTGACCAGC
ACCGCAGTTTTGGCTTCCAGTGCTGACCACACCAAATTGTACGGCTCGAT
CCTTGCCAAACAACGTGGTCTTCCATAAGAGCGGTCCACCGGAGTCCCCA
TTGCATGTGTCCACATAATCTCCACTGGCGCAGAGGAACGAAGTATCCCT
GCCGTCGGTGCACTTCTCAGTTCTTATATCCACCTCCATTGTACTGTTGG
CATAGCGTAGACTCTCCGTTTTTCCCCAGCCCACCGCCATGAAGCGTTGT
CCCAGCTGCAAGGTAAACGCCAAGAGTTCGTCGGTCAGGGGCAGGCATAT
GGGTCGTATGTGATCTTTAAAGACCACTTTCTTGTTTAGTTTTATCAGGG
CAATATCATACCCGGGATAAAAGAGGTTAAACTCCTCGTGAAGAATCCAC
TTGTCGATGGTAAACTCCTCCACGGGCGGAGCGCAAACCCGTTCATAATT
GTAGGTGGTGCAGTCACTTGTGGAACTAAGGTCGAGCTCTCCCAGCCACA
CTCTAATCTCCTTAGATCGGGGACACATGTCGACTGATAACT
BS15961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PA | 612 | CG30002-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
CG1773-PA | 954 | CG1773-RA | 325..629 | 628..324 | 1100 | 94.4 | Minus |
CG1773-PA | 954 | CG1773-RA | 652..905 | 301..48 | 920 | 94.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..959 | 628..17 | 3060 | 100 | Minus |
CG1773-RA | 1123 | CG1773-RA | 350..961 | 628..16 | 2410 | 93 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705534 | 416..17 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 9707019..9707412 | 416..23 | 1475 | 91.6 | Minus |
2R | 25286936 | 2R | 9704871..9705064 | 608..415 | 970 | 100 | Minus |
2R | 25286936 | 2R | 9706755..9706948 | 608..415 | 835 | 95.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:12 has no hits.
BS15961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:45 Download gff for
BS15961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:18 Download gff for
BS15961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..959 | 17..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:57 Download gff for
BS15961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..959 | 17..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:57 Download gff for
BS15961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9704782..9704806 | 609..633 | 92 | -> | Minus |
2R | 9704871..9705064 | 415..608 | 100 | -> | Minus |
2R | 9705137..9705534 | 17..414 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:18 Download gff for
BS15961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592287..5592311 | 609..633 | 92 | -> | Minus |
arm_2R | 5592376..5592569 | 415..608 | 100 | -> | Minus |
arm_2R | 5592642..5593039 | 17..414 | 100 | | Minus |
BS15961.5prime Sequence
642 bp (642 high quality bases) assembled on 2007-04-16
> BS15961.5prime
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTTAAAAGCTTTCTAGACC
BS15961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PA | 612 | CG30002-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
CG1773-PA | 954 | CG1773-RA | 325..629 | 17..321 | 1100 | 94.4 | Plus |
CG1773-PA | 954 | CG1773-RA | 652..905 | 344..597 | 920 | 94.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..959 | 17..628 | 3060 | 100 | Plus |
CG1773-RA | 1123 | CG1773-RA | 350..961 | 17..629 | 2410 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705534 | 229..628 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 9707019..9707412 | 229..622 | 1475 | 91.6 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 37..230 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 37..230 | 835 | 95.4 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:29:14 has no hits.
BS15961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:45 Download gff for
BS15961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:44 Download gff for
BS15961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..959 | 12..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:26 Download gff for
BS15961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..959 | 12..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:26 Download gff for
BS15961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9705137..9705534 | 231..628 | 100 | | Plus |
2R | 9704782..9704806 | 12..36 | 92 | -> | Plus |
2R | 9704871..9705064 | 37..230 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:44 Download gff for
BS15961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592287..5592311 | 12..36 | 92 | -> | Plus |
arm_2R | 5592376..5592569 | 37..230 | 100 | -> | Plus |
arm_2R | 5592642..5593039 | 231..628 | 100 | | Plus |
BS15961.complete Sequence
644 bp assembled on 2007-05-07
GenBank Submission: FJ637996
> BS15961.complete
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTTAAAAGCTTTCTAGACCAT
BS15961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 936 | CG30002-PB | 325..936 | 17..628 | 3060 | 100 | Plus |
CG1773-RA | 954 | CG1773-PA | 325..930 | 17..622 | 2400 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..959 | 17..628 | 3060 | 100 | Plus |
CG1773-RA | 1123 | CG1773-RA | 350..955 | 17..622 | 2400 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705534 | 229..628 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 9707019..9707412 | 229..622 | 1475 | 91.6 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 37..230 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 37..230 | 835 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:01:16 has no hits.
BS15961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:06 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:07 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 400..1016 | 12..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:20 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 348..957 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:06 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 400..1016 | 12..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:27 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 348..957 | 17..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:27 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9704871..9705064 | 37..230 | 100 | -> | Plus |
2R | 9705137..9705532 | 231..626 | 100 | | Plus |
2R | 9704787..9704806 | 17..36 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:20 Download gff for
BS15961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592292..5592311 | 17..36 | 100 | -> | Plus |
arm_2R | 5592376..5592569 | 37..230 | 100 | -> | Plus |
arm_2R | 5592642..5593037 | 231..626 | 100 | | Plus |
BS15961.pep Sequence
Translation from 16 to 627
> BS15961.pep
MCPRSKEIRVWLGELDLSSTSDCTTYNYERVCAPPVEEFTIDKWILHEEF
NLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQLGQRFMAVG
WGKTESLRYANSTMEVDIRTEKCTDGRDTSFLCASGDYVDTCNGDSGGPL
LWKTTLFGKDRAVQFGVVSTGSQNCGAGHKAYYMDVPTYMPWILEKMAEF
SDV*
BS15961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PB | 311 | CG30002-PB | 109..311 | 1..203 | 1105 | 100 | Plus |
CG1773-PA | 317 | CG1773-PA | 109..310 | 1..202 | 1000 | 90.1 | Plus |
grass-PA | 335 | CG5896-PA | 132..331 | 7..198 | 307 | 37.4 | Plus |
grass-PB | 377 | CG5896-PB | 174..373 | 7..198 | 307 | 37.4 | Plus |
CG5909-PA | 381 | CG5909-PA | 183..380 | 8..197 | 286 | 34.5 | Plus |