Clone BS15962 Report

Search the DGRC for BS15962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-Cf6-RA
Protein status:BS15962.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15962.5prime Sequence

351 bp (351 high quality bases) assembled on 2007-04-16

> BS15962.5prime
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGTAGAAGCTTTCTAGAC
C

BS15962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4412-PA 321 ATPsyn-Cf6-RA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..471 17..338 1610 100 Plus
ATPsyn-Cf6-RC 586 CG4412-RC 85..406 17..338 1610 100 Plus
ATPsyn-Cf6-RA 526 CG4412-RA 85..406 17..338 1610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355400..23355569 338..169 850 100 Minus
3R 32079331 3R 23355634..23355785 168..17 760 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:59:58 has no hits.

BS15962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:46 Download gff for BS15962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:31 Download gff for BS15962.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..413 17..346 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:50 Download gff for BS15962.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..413 17..346 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:50 Download gff for BS15962.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23355391..23355569 169..346 97 <- Minus
3R 23355634..23355797 6..168 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:31 Download gff for BS15962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181113..19181291 169..346 97 <- Minus
arm_3R 19181356..19181519 6..168 97   Minus

BS15962.3prime Sequence

351 bp (351 high quality bases) assembled on 2007-04-16

> BS15962.3prime
ATGGTCTAGAAAGCTTCTACTGTGGGGCCTGGGTGATGGGATCGACCTTA
ACATCGGGGAACTGGAATTCGGGGAACTTCAGCATGTCGGTCTTGCCATC
GCTGCCAAACTGCTTGGCCACACGGTCCAGTTCGGTCTTCAGCTCCCGCT
CAATATCGGGATTGGAGTCCACCAGCTTGCCACCGGCGCTCTTCTGCTTG
TACTCGCGCACTTTGTCCAGGAACAGCTGCTGGATGGGATCGGAGGCCTT
GTTCAGGGCAGGGGCAACGATTCCGAAGTTACGACGGGCCTCTGTGCGCA
GGACACGCATGCCACTCAGCAGGGATTGCGACAGCATGTCGACTGATAAC
T

BS15962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4412-PA 321 ATPsyn-Cf6-RA 1..321 337..17 1605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..471 337..16 1610 100 Minus
ATPsyn-Cf6-RC 586 CG4412-RC 85..406 337..16 1610 100 Minus
ATPsyn-Cf6-RA 526 CG4412-RA 85..406 337..16 1610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355400..23355569 16..185 850 100 Plus
3R 32079331 3R 23355634..23355785 186..337 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:09:01 has no hits.

BS15962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:46 Download gff for BS15962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 17..337 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:38 Download gff for BS15962.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..413 8..337 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:51 Download gff for BS15962.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..413 8..337 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:51 Download gff for BS15962.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23355391..23355569 8..185 97 <- Plus
3R 23355634..23355797 186..348 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:38 Download gff for BS15962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181113..19181291 8..185 97 <- Plus
arm_3R 19181356..19181519 186..348 97   Plus

BS15962.complete Sequence

353 bp assembled on 2007-05-07

> BS15962.complete
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGTAGAAGCTTTCTAGAC
CAT

BS15962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 321 CG4412-PB 1..321 17..337 1605 100 Plus
ATPsyn-Cf6-RC 321 CG4412-PC 1..321 17..337 1605 100 Plus
ATPsyn-Cf6-RA 321 CG4412-PA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..471 17..338 1610 100 Plus
ATPsyn-Cf6-RC 586 CG4412-RC 85..406 17..338 1610 100 Plus
ATPsyn-Cf6-RA 526 CG4412-RA 85..406 17..338 1610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355400..23355569 338..169 850 100 Minus
3R 32079331 3R 23355634..23355785 168..17 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:07:03 has no hits.

BS15962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:30 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:28 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 81..409 17..346 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:07 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..405 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:30 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 81..409 17..346 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:32 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..405 17..337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:32 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23355401..23355569 169..337 100 <- Minus
3R 23355634..23355785 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:07 Download gff for BS15962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181123..19181291 169..337 100 <- Minus
arm_3R 19181356..19181507 17..168 100   Minus

BS15962.pep Sequence

Translation from 16 to 336

> BS15962.pep
MLSQSLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKS
AGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDP
ITQAPQ*

BS15962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-PB 106 CG4412-PB 1..106 1..106 534 100 Plus
ATPsyn-Cf6-PC 106 CG4412-PC 1..106 1..106 534 100 Plus
ATPsyn-Cf6-PA 106 CG4412-PA 1..106 1..106 534 100 Plus
CG12027-PA 147 CG12027-PA 26..95 33..102 203 54.3 Plus