Clone Sequence Records
BS15962.5prime Sequence
351 bp (351 high quality bases) assembled on 2007-04-16
> BS15962.5prime
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGTAGAAGCTTTCTAGAC
C
BS15962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4412-PA | 321 | ATPsyn-Cf6-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-Cf6-RB | 616 | CG4412-RB | 150..471 | 17..338 | 1610 | 100 | Plus |
ATPsyn-Cf6-RC | 586 | CG4412-RC | 85..406 | 17..338 | 1610 | 100 | Plus |
ATPsyn-Cf6-RA | 526 | CG4412-RA | 85..406 | 17..338 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23355400..23355569 | 338..169 | 850 | 100 | Minus |
3R | 32079331 | 3R | 23355634..23355785 | 168..17 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:59:58 has no hits.
BS15962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:46 Download gff for
BS15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4412-PA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:31 Download gff for
BS15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..413 | 17..346 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:50 Download gff for
BS15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..413 | 17..346 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:50 Download gff for
BS15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23355391..23355569 | 169..346 | 97 | <- | Minus |
3R | 23355634..23355797 | 6..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:31 Download gff for
BS15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19181113..19181291 | 169..346 | 97 | <- | Minus |
arm_3R | 19181356..19181519 | 6..168 | 97 | | Minus |
BS15962.3prime Sequence
351 bp (351 high quality bases) assembled on 2007-04-16
> BS15962.3prime
ATGGTCTAGAAAGCTTCTACTGTGGGGCCTGGGTGATGGGATCGACCTTA
ACATCGGGGAACTGGAATTCGGGGAACTTCAGCATGTCGGTCTTGCCATC
GCTGCCAAACTGCTTGGCCACACGGTCCAGTTCGGTCTTCAGCTCCCGCT
CAATATCGGGATTGGAGTCCACCAGCTTGCCACCGGCGCTCTTCTGCTTG
TACTCGCGCACTTTGTCCAGGAACAGCTGCTGGATGGGATCGGAGGCCTT
GTTCAGGGCAGGGGCAACGATTCCGAAGTTACGACGGGCCTCTGTGCGCA
GGACACGCATGCCACTCAGCAGGGATTGCGACAGCATGTCGACTGATAAC
T
BS15962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4412-PA | 321 | ATPsyn-Cf6-RA | 1..321 | 337..17 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-Cf6-RB | 616 | CG4412-RB | 150..471 | 337..16 | 1610 | 100 | Minus |
ATPsyn-Cf6-RC | 586 | CG4412-RC | 85..406 | 337..16 | 1610 | 100 | Minus |
ATPsyn-Cf6-RA | 526 | CG4412-RA | 85..406 | 337..16 | 1610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23355400..23355569 | 16..185 | 850 | 100 | Plus |
3R | 32079331 | 3R | 23355634..23355785 | 186..337 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:09:01 has no hits.
BS15962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:46 Download gff for
BS15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4412-PA | 1..321 | 17..337 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:38 Download gff for
BS15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..413 | 8..337 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:51 Download gff for
BS15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..413 | 8..337 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:51 Download gff for
BS15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23355391..23355569 | 8..185 | 97 | <- | Plus |
3R | 23355634..23355797 | 186..348 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:38 Download gff for
BS15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19181113..19181291 | 8..185 | 97 | <- | Plus |
arm_3R | 19181356..19181519 | 186..348 | 97 | | Plus |
BS15962.complete Sequence
353 bp assembled on 2007-05-07
> BS15962.complete
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGTAGAAGCTTTCTAGAC
CAT
BS15962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-Cf6-RB | 321 | CG4412-PB | 1..321 | 17..337 | 1605 | 100 | Plus |
ATPsyn-Cf6-RC | 321 | CG4412-PC | 1..321 | 17..337 | 1605 | 100 | Plus |
ATPsyn-Cf6-RA | 321 | CG4412-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-Cf6-RB | 616 | CG4412-RB | 150..471 | 17..338 | 1610 | 100 | Plus |
ATPsyn-Cf6-RC | 586 | CG4412-RC | 85..406 | 17..338 | 1610 | 100 | Plus |
ATPsyn-Cf6-RA | 526 | CG4412-RA | 85..406 | 17..338 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23355400..23355569 | 338..169 | 850 | 100 | Minus |
3R | 32079331 | 3R | 23355634..23355785 | 168..17 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:07:03 has no hits.
BS15962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:30 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:28 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 81..409 | 17..346 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:07 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..405 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:30 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 81..409 | 17..346 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:32 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-Cf6-RA | 85..405 | 17..337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:32 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23355401..23355569 | 169..337 | 100 | <- | Minus |
3R | 23355634..23355785 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:07 Download gff for
BS15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19181123..19181291 | 169..337 | 100 | <- | Minus |
arm_3R | 19181356..19181507 | 17..168 | 100 | | Minus |
BS15962.pep Sequence
Translation from 16 to 336
> BS15962.pep
MLSQSLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKS
AGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDP
ITQAPQ*
BS15962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-Cf6-PB | 106 | CG4412-PB | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsyn-Cf6-PC | 106 | CG4412-PC | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsyn-Cf6-PA | 106 | CG4412-PA | 1..106 | 1..106 | 534 | 100 | Plus |
CG12027-PA | 147 | CG12027-PA | 26..95 | 33..102 | 203 | 54.3 | Plus |