Clone Sequence Records
BS15963.3prime Sequence
879 bp (814 high quality bases) assembled on 2007-04-16
> BS15963.3prime
ATGGTCTAGAAAGCTTCTAGGCCTCCAGCCCCCGGGTGTCCTTCAATGGC
TCCAGGGGCTGCAGGTTGACCGTCTTGTAGCCTCGATCCCGCCGGAACCA
GAGCCAGTTGTCCCCGTTGAAATAGTCCTCGATGTGCTCCAGGCTGCGGC
CCTTCGTCTCCGGCTGGAAAAGGCACATAAAGGCAGTGAGCAGGAAACTG
GACACGCCGAAGACCAGGAACACGCCGCGCATCTTGAGCATGGCCTGCAA
AGCGGGAAACTTCTTCGCGAAGATGAACAGAGCGACGTTCATGGAGGCAA
ACACTCCGCCGGCAGTCCGTCCGCGTATCCTAGCCGGGAAGAGCTCGCCG
ATCATAATGCCGGGCATCACCATCAGAGCCGTGTTGAAGATGATGTAGCC
CAAGAGACAGCCGGCACCAACGAATACGTCGTACGACATTTTCGGTTGAT
CGAATCTGGCATACTGATAGACACTGAGCACCAGGCAGAACAAGCCGGAG
CCGATTCCCGACACTATCATGATCCTGCGGCGGCGAACGAAGATCAGGAC
TACGCAGAAGACCATGCAGCAGATCACCCGGACAACTGCCGTCGCAATGG
CCGCCTGCTTGGAGTCGAACTCCGCTCCGAACTCCGAGATCATGTCCACG
GCATAGAAGATCACGATGAACGTGCCGGAGAACATCTGCAGCAGCGAGAA
CACGATCACAATGACCAGCGGCTTGATGGCCACGCGCTGGCAGCACAGCT
GGAAGATGTTCTCGTTCGTCTTGGTGGTCACCCGCTCCTTGGCCAGCCTC
TGCTTCATATCATTCAGCTCCTTCTGCGCACTGATCTCGCTGCCCCGCAG
GAACGAGAGGGCCTGCAGCGCACGCTTCT
BS15963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 1602 | CG4797-RB | 740..1602 | 879..17 | 4315 | 100 | Minus |
CG4797-PA | 1383 | CG4797-RA | 521..1383 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 1003..1865 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23812426..23813288 | 17..879 | 4315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:24:09 has no hits.
BS15963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:47 Download gff for
BS15963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PA | 521..1383 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:30 Download gff for
BS15963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 1003..1865 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:48 Download gff for
BS15963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 1003..1865 | 17..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:48 Download gff for
BS15963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23812426..23813288 | 17..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:30 Download gff for
BS15963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19699949..19700811 | 17..879 | 100 | | Plus |
BS15963.5prime Sequence
809 bp (807 high quality bases) assembled on 2007-04-16
> BS15963.5prime
GAAGTTATCAGTCGACATGAGTGTCGAAAGAGATGACGAGTATCTAAAAT
TTGTGCCCCACACGATGTCGTATCAAGTCGTCCCGGGATCGGAGTTCCAG
TGCAAGAAGGCCAGCTATAGCTCCAGGAAGCTCTCCACCATCGACGAGCA
GGACGACGATGCTGCCAACCGAAGGGGAATGATGCACCAGATTCTGGCCA
CCTGTGCTGTACTCTTACTTTCCGCTGGATGCGGCATGCCCATTGGATTC
TCGGCCATCCTGTTGCCCCAGCTGATGGATAACAACTCCACGGAGATACC
CATTGATGTAGAGACGGGCTCCTGGATAGCAAGTGTCCATAGCCTGGCCA
CACCATTTGGATCCCTGCTGTCGGGACCTCTGGCGGACTATTTGGGTCGC
CGTAGGACCCTGATTCTCTCTGTGATTCCCCTCCTCCTGGGATGGAGCAC
CTTGGCGATCGCCAAGAGCATCAAGGTGGTGATCTTTGCACGCTTCCTGT
GCGGATTCGCCACCGGAATTCTGGGTGGACCCGGACAGGTGTACATTGCG
GAAACGGCGGAACCCAATCTGCGGAGTCTGCTGATCGGCGCGCCCTATGT
GGCCTACTCAAGCGGCATCCTAATGGTCTACTCCCTGGGCTCCATGATGT
ACTGGCGTAGTGTTGCGTGGTGCGCCAACGTGCTGCCCCTGCTGTCCATG
GTGTCTATCTCGTTTATACCGGAGACTCCGGCCTGGCTACTCCGCAATGG
CCACGAGAAGCGTGCGCTGCAGGCCCTCTCGTTCCTGCGGGGCAGCGAGA
TCAGTGCGC
BS15963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 1602 | CG4797-RB | 1..793 | 17..809 | 3965 | 100 | Plus |
CG4797-PA | 1383 | CG4797-RA | 1..574 | 236..809 | 2870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 264..1056 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23813235..23813507 | 809..537 | 1365 | 100 | Minus |
2R | 25286936 | 2R | 23814322..23814535 | 541..328 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 23815442..23815603 | 190..29 | 810 | 100 | Minus |
2R | 25286936 | 2R | 23814596..23814736 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:08:11 has no hits.
BS15963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:47 Download gff for
BS15963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PB | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:01 Download gff for
BS15963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 264..1056 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:27 Download gff for
BS15963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 264..1056 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:27 Download gff for
BS15963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23813235..23813505 | 539..809 | 100 | <- | Minus |
2R | 23814325..23814533 | 330..538 | 100 | <- | Minus |
2R | 23814596..23814734 | 191..329 | 100 | <- | Minus |
2R | 23815442..23815601 | 31..190 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:01 Download gff for
BS15963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19700758..19701028 | 539..809 | 100 | <- | Minus |
arm_2R | 19701848..19702056 | 330..538 | 100 | <- | Minus |
arm_2R | 19702119..19702257 | 191..329 | 100 | <- | Minus |
arm_2R | 19702965..19703124 | 31..190 | 100 | <- | Minus |
BS15963.complete Sequence
1634 bp assembled on 2007-05-07
GenBank Submission: FJ637997
> BS15963.complete
GAAGTTATCAGTCGACATGAGTGTCGAAAGAGATGACGAGTATCTAAAAT
TTGTGCCCCACACGATGTCGTATCAAGTCGTCCCGGGATCGGAGTTCCAG
TGCAAGAAGGCCAGCTATAGCTCCAGGAAGCTCTCCACCATCGACGAGCA
GGACGACGATGCTGCCAACCGAAGGGGAATGATGCACCAGATTCTGGCCA
CCTGTGCTGTACTCTTACTTTCCGCTGGATGCGGCATGCCCATTGGATTC
TCGGCCATCCTGTTGCCCCAGCTGATGGATAACAACTCCACGGAGATACC
CATTGATGTAGAGACGGGCTCCTGGATAGCAAGTGTCCATAGCCTGGCCA
CACCATTTGGATCCCTGCTGTCGGGACCTCTGGCGGACTATTTGGGTCGC
CGTAGGACCCTGATTCTCTCTGTGATTCCCCTCCTCCTGGGATGGAGCAC
CTTGGCGATCGCCAAGAGCATCAAGGTGGTGATCTTTGCACGCTTCCTGT
GCGGATTCGCCACCGGAATTCTGGGTGGACCCGGACAGGTGTACATTGCG
GAAACGGCGGAACCCAATCTGCGGAGTCTGCTGATCGGCGCGCCCTATGT
GGCCTACTCAAGCGGCATCCTAATGGTCTACTCCCTGGGCTCCATGATGT
ACTGGCGTAGTGTTGCGTGGTGCGCCAACGTGCTGCCCCTGCTGTCCATG
GTGTCTATCTCGTTTATACCGGAGACTCCGGCCTGGCTACTCCGCAATGG
CCACGAGAAGCGTGCGCTGCAGGCCCTCTCGTTCCTGCGGGGCAGCGAGA
TCAGTGCGCAGAAGGAGCTGAATGATATGAAGCAGAGGCTGGCCAAGGAG
CGGGTGACCACCAAGACGAACGAGAACATCTTCCAGCTGTGCTGCCAGCG
CGTGGCCATCAAGCCGCTGGTCATTGTGATCGTGTTCTCGCTGCTGCAGA
TGTTCTCCGGCACGTTCATCGTGATCTTCTATGCCGTGGACATGATCTCG
GAGTTCGGAGCGGAGTTCGACTCCAAGCAGGCGGCCATTGCGACGGCAGT
TGTCCGGGTGATCTGCTGCATGGTCTTCTGCGTAGTCCTGATCTTCGTTC
GCCGCCGCAGGATCATGATAGTGTCGGGAATCGGCTCCGGCTTGTTCTGC
CTGGTGCTCAGTGTCTATCAGTATGCCAGATTCGATCAACCGAAAATGTC
GTACGACGTATTCGTTGGTGCCGGCTGTCTCTTGGGCTACATCATCTTCA
ACACGGCTCTGATGGTGATGCCCGGCATTATGATCGGCGAGCTCTTCCCG
GCTAGGATACGCGGACGGACTGCCGGCGGAGTGTTTGCCTCCATGAACGT
CGCTCTGTTCATCTTCGCGAAGAAGTTTCCCGCTTTGCAGGCCATGCTCA
AGATGCGCGGCGTGTTCCTGGTCTTCGGCGTGTCCAGTTTCCTGCTCACT
GCCTTTATGTGCCTTTTCCAGCCGGAGACGAAGGGCCGCAGCCTGGAGCA
CATCGAGGACTATTTCAACGGGGACAACTGGCTCTGGTTCCGGCGGGATC
GAGGCTACAAGACGGTCAACCTGCAGCCCCTGGAGCCATTGAAGGACACC
CGGGGGCTGGAGGCCTAGAAGCTTTCTAGACCAT
BS15963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 1602 | CG4797-PB | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 264..1865 | 17..1618 | 8010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23812426..23813507 | 1618..537 | 5410 | 100 | Minus |
2R | 25286936 | 2R | 23814322..23814535 | 541..328 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 23815442..23815603 | 190..29 | 810 | 100 | Minus |
2R | 25286936 | 2R | 23814596..23814736 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:23:08 has no hits.
BS15963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:26 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:25 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 263..1864 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:38 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 264..1865 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:28 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 263..1864 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:48 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 264..1865 | 17..1618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:48 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23814325..23814533 | 330..538 | 100 | <- | Minus |
2R | 23814596..23814734 | 191..329 | 100 | <- | Minus |
2R | 23815442..23815601 | 31..190 | 100 | <- | Minus |
2R | 23812426..23813505 | 539..1618 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:38 Download gff for
BS15963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19699949..19701028 | 539..1618 | 100 | <- | Minus |
arm_2R | 19701848..19702056 | 330..538 | 100 | <- | Minus |
arm_2R | 19702119..19702257 | 191..329 | 100 | <- | Minus |
arm_2R | 19702965..19703124 | 31..190 | 100 | <- | Minus |
BS15963.pep Sequence
Translation from 16 to 1617
> BS15963.pep
MSVERDDEYLKFVPHTMSYQVVPGSEFQCKKASYSSRKLSTIDEQDDDAA
NRRGMMHQILATCAVLLLSAGCGMPIGFSAILLPQLMDNNSTEIPIDVET
GSWIASVHSLATPFGSLLSGPLADYLGRRRTLILSVIPLLLGWSTLAIAK
SIKVVIFARFLCGFATGILGGPGQVYIAETAEPNLRSLLIGAPYVAYSSG
ILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIPETPAWLLRNGHEKRA
LQALSFLRGSEISAQKELNDMKQRLAKERVTTKTNENIFQLCCQRVAIKP
LVIVIVFSLLQMFSGTFIVIFYAVDMISEFGAEFDSKQAAIATAVVRVIC
CMVFCVVLIFVRRRRIMIVSGIGSGLFCLVLSVYQYARFDQPKMSYDVFV
GAGCLLGYIIFNTALMVMPGIMIGELFPARIRGRTAGGVFASMNVALFIF
AKKFPALQAMLKMRGVFLVFGVSSFLLTAFMCLFQPETKGRSLEHIEDYF
NGDNWLWFRRDRGYKTVNLQPLEPLKDTRGLEA*
BS15963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 533 | CG4797-PB | 1..533 | 1..533 | 2726 | 100 | Plus |
Tret1-2-PA | 488 | CG8234-PA | 28..466 | 58..497 | 587 | 31.6 | Plus |
Tret1-1-PB | 489 | CG30035-PB | 28..485 | 58..522 | 573 | 30.5 | Plus |
Tret1-1-PA | 857 | CG30035-PA | 396..853 | 58..522 | 573 | 30.5 | Plus |
CG8249-PC | 521 | CG8249-PC | 12..496 | 24..500 | 476 | 29.2 | Plus |