Clone BS15963 Report

Search the DGRC for BS15963

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG4797-RB
Protein status:BS15963.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15963.3prime Sequence

879 bp (814 high quality bases) assembled on 2007-04-16

> BS15963.3prime
ATGGTCTAGAAAGCTTCTAGGCCTCCAGCCCCCGGGTGTCCTTCAATGGC
TCCAGGGGCTGCAGGTTGACCGTCTTGTAGCCTCGATCCCGCCGGAACCA
GAGCCAGTTGTCCCCGTTGAAATAGTCCTCGATGTGCTCCAGGCTGCGGC
CCTTCGTCTCCGGCTGGAAAAGGCACATAAAGGCAGTGAGCAGGAAACTG
GACACGCCGAAGACCAGGAACACGCCGCGCATCTTGAGCATGGCCTGCAA
AGCGGGAAACTTCTTCGCGAAGATGAACAGAGCGACGTTCATGGAGGCAA
ACACTCCGCCGGCAGTCCGTCCGCGTATCCTAGCCGGGAAGAGCTCGCCG
ATCATAATGCCGGGCATCACCATCAGAGCCGTGTTGAAGATGATGTAGCC
CAAGAGACAGCCGGCACCAACGAATACGTCGTACGACATTTTCGGTTGAT
CGAATCTGGCATACTGATAGACACTGAGCACCAGGCAGAACAAGCCGGAG
CCGATTCCCGACACTATCATGATCCTGCGGCGGCGAACGAAGATCAGGAC
TACGCAGAAGACCATGCAGCAGATCACCCGGACAACTGCCGTCGCAATGG
CCGCCTGCTTGGAGTCGAACTCCGCTCCGAACTCCGAGATCATGTCCACG
GCATAGAAGATCACGATGAACGTGCCGGAGAACATCTGCAGCAGCGAGAA
CACGATCACAATGACCAGCGGCTTGATGGCCACGCGCTGGCAGCACAGCT
GGAAGATGTTCTCGTTCGTCTTGGTGGTCACCCGCTCCTTGGCCAGCCTC
TGCTTCATATCATTCAGCTCCTTCTGCGCACTGATCTCGCTGCCCCGCAG
GAACGAGAGGGCCTGCAGCGCACGCTTCT

BS15963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 1602 CG4797-RB 740..1602 879..17 4315 100 Minus
CG4797-PA 1383 CG4797-RA 521..1383 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 1003..1865 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23812426..23813288 17..879 4315 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:24:09 has no hits.

BS15963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:47 Download gff for BS15963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PA 521..1383 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:30 Download gff for BS15963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 1003..1865 17..879 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:48 Download gff for BS15963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 1003..1865 17..879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:48 Download gff for BS15963.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23812426..23813288 17..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:30 Download gff for BS15963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19699949..19700811 17..879 100   Plus

BS15963.5prime Sequence

809 bp (807 high quality bases) assembled on 2007-04-16

> BS15963.5prime
GAAGTTATCAGTCGACATGAGTGTCGAAAGAGATGACGAGTATCTAAAAT
TTGTGCCCCACACGATGTCGTATCAAGTCGTCCCGGGATCGGAGTTCCAG
TGCAAGAAGGCCAGCTATAGCTCCAGGAAGCTCTCCACCATCGACGAGCA
GGACGACGATGCTGCCAACCGAAGGGGAATGATGCACCAGATTCTGGCCA
CCTGTGCTGTACTCTTACTTTCCGCTGGATGCGGCATGCCCATTGGATTC
TCGGCCATCCTGTTGCCCCAGCTGATGGATAACAACTCCACGGAGATACC
CATTGATGTAGAGACGGGCTCCTGGATAGCAAGTGTCCATAGCCTGGCCA
CACCATTTGGATCCCTGCTGTCGGGACCTCTGGCGGACTATTTGGGTCGC
CGTAGGACCCTGATTCTCTCTGTGATTCCCCTCCTCCTGGGATGGAGCAC
CTTGGCGATCGCCAAGAGCATCAAGGTGGTGATCTTTGCACGCTTCCTGT
GCGGATTCGCCACCGGAATTCTGGGTGGACCCGGACAGGTGTACATTGCG
GAAACGGCGGAACCCAATCTGCGGAGTCTGCTGATCGGCGCGCCCTATGT
GGCCTACTCAAGCGGCATCCTAATGGTCTACTCCCTGGGCTCCATGATGT
ACTGGCGTAGTGTTGCGTGGTGCGCCAACGTGCTGCCCCTGCTGTCCATG
GTGTCTATCTCGTTTATACCGGAGACTCCGGCCTGGCTACTCCGCAATGG
CCACGAGAAGCGTGCGCTGCAGGCCCTCTCGTTCCTGCGGGGCAGCGAGA
TCAGTGCGC

BS15963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 1602 CG4797-RB 1..793 17..809 3965 100 Plus
CG4797-PA 1383 CG4797-RA 1..574 236..809 2870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 264..1056 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23813235..23813507 809..537 1365 100 Minus
2R 25286936 2R 23814322..23814535 541..328 1070 100 Minus
2R 25286936 2R 23815442..23815603 190..29 810 100 Minus
2R 25286936 2R 23814596..23814736 329..189 705 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:08:11 has no hits.

BS15963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:47 Download gff for BS15963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PB 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:01 Download gff for BS15963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 264..1056 17..809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:27 Download gff for BS15963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 264..1056 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:27 Download gff for BS15963.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23813235..23813505 539..809 100 <- Minus
2R 23814325..23814533 330..538 100 <- Minus
2R 23814596..23814734 191..329 100 <- Minus
2R 23815442..23815601 31..190 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:01 Download gff for BS15963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19700758..19701028 539..809 100 <- Minus
arm_2R 19701848..19702056 330..538 100 <- Minus
arm_2R 19702119..19702257 191..329 100 <- Minus
arm_2R 19702965..19703124 31..190 100 <- Minus

BS15963.complete Sequence

1634 bp assembled on 2007-05-07

GenBank Submission: FJ637997

> BS15963.complete
GAAGTTATCAGTCGACATGAGTGTCGAAAGAGATGACGAGTATCTAAAAT
TTGTGCCCCACACGATGTCGTATCAAGTCGTCCCGGGATCGGAGTTCCAG
TGCAAGAAGGCCAGCTATAGCTCCAGGAAGCTCTCCACCATCGACGAGCA
GGACGACGATGCTGCCAACCGAAGGGGAATGATGCACCAGATTCTGGCCA
CCTGTGCTGTACTCTTACTTTCCGCTGGATGCGGCATGCCCATTGGATTC
TCGGCCATCCTGTTGCCCCAGCTGATGGATAACAACTCCACGGAGATACC
CATTGATGTAGAGACGGGCTCCTGGATAGCAAGTGTCCATAGCCTGGCCA
CACCATTTGGATCCCTGCTGTCGGGACCTCTGGCGGACTATTTGGGTCGC
CGTAGGACCCTGATTCTCTCTGTGATTCCCCTCCTCCTGGGATGGAGCAC
CTTGGCGATCGCCAAGAGCATCAAGGTGGTGATCTTTGCACGCTTCCTGT
GCGGATTCGCCACCGGAATTCTGGGTGGACCCGGACAGGTGTACATTGCG
GAAACGGCGGAACCCAATCTGCGGAGTCTGCTGATCGGCGCGCCCTATGT
GGCCTACTCAAGCGGCATCCTAATGGTCTACTCCCTGGGCTCCATGATGT
ACTGGCGTAGTGTTGCGTGGTGCGCCAACGTGCTGCCCCTGCTGTCCATG
GTGTCTATCTCGTTTATACCGGAGACTCCGGCCTGGCTACTCCGCAATGG
CCACGAGAAGCGTGCGCTGCAGGCCCTCTCGTTCCTGCGGGGCAGCGAGA
TCAGTGCGCAGAAGGAGCTGAATGATATGAAGCAGAGGCTGGCCAAGGAG
CGGGTGACCACCAAGACGAACGAGAACATCTTCCAGCTGTGCTGCCAGCG
CGTGGCCATCAAGCCGCTGGTCATTGTGATCGTGTTCTCGCTGCTGCAGA
TGTTCTCCGGCACGTTCATCGTGATCTTCTATGCCGTGGACATGATCTCG
GAGTTCGGAGCGGAGTTCGACTCCAAGCAGGCGGCCATTGCGACGGCAGT
TGTCCGGGTGATCTGCTGCATGGTCTTCTGCGTAGTCCTGATCTTCGTTC
GCCGCCGCAGGATCATGATAGTGTCGGGAATCGGCTCCGGCTTGTTCTGC
CTGGTGCTCAGTGTCTATCAGTATGCCAGATTCGATCAACCGAAAATGTC
GTACGACGTATTCGTTGGTGCCGGCTGTCTCTTGGGCTACATCATCTTCA
ACACGGCTCTGATGGTGATGCCCGGCATTATGATCGGCGAGCTCTTCCCG
GCTAGGATACGCGGACGGACTGCCGGCGGAGTGTTTGCCTCCATGAACGT
CGCTCTGTTCATCTTCGCGAAGAAGTTTCCCGCTTTGCAGGCCATGCTCA
AGATGCGCGGCGTGTTCCTGGTCTTCGGCGTGTCCAGTTTCCTGCTCACT
GCCTTTATGTGCCTTTTCCAGCCGGAGACGAAGGGCCGCAGCCTGGAGCA
CATCGAGGACTATTTCAACGGGGACAACTGGCTCTGGTTCCGGCGGGATC
GAGGCTACAAGACGGTCAACCTGCAGCCCCTGGAGCCATTGAAGGACACC
CGGGGGCTGGAGGCCTAGAAGCTTTCTAGACCAT

BS15963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 1602 CG4797-PB 1..1602 17..1618 8010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 264..1865 17..1618 8010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23812426..23813507 1618..537 5410 100 Minus
2R 25286936 2R 23814322..23814535 541..328 1070 100 Minus
2R 25286936 2R 23815442..23815603 190..29 810 100 Minus
2R 25286936 2R 23814596..23814736 329..189 705 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:23:08 has no hits.

BS15963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:26 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 1..1602 17..1618 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:25 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 263..1864 17..1618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:38 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 264..1865 17..1618 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:28 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 263..1864 17..1618 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:48 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 264..1865 17..1618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:48 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23814325..23814533 330..538 100 <- Minus
2R 23814596..23814734 191..329 100 <- Minus
2R 23815442..23815601 31..190 100 <- Minus
2R 23812426..23813505 539..1618 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:38 Download gff for BS15963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19699949..19701028 539..1618 100 <- Minus
arm_2R 19701848..19702056 330..538 100 <- Minus
arm_2R 19702119..19702257 191..329 100 <- Minus
arm_2R 19702965..19703124 31..190 100 <- Minus

BS15963.pep Sequence

Translation from 16 to 1617

> BS15963.pep
MSVERDDEYLKFVPHTMSYQVVPGSEFQCKKASYSSRKLSTIDEQDDDAA
NRRGMMHQILATCAVLLLSAGCGMPIGFSAILLPQLMDNNSTEIPIDVET
GSWIASVHSLATPFGSLLSGPLADYLGRRRTLILSVIPLLLGWSTLAIAK
SIKVVIFARFLCGFATGILGGPGQVYIAETAEPNLRSLLIGAPYVAYSSG
ILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIPETPAWLLRNGHEKRA
LQALSFLRGSEISAQKELNDMKQRLAKERVTTKTNENIFQLCCQRVAIKP
LVIVIVFSLLQMFSGTFIVIFYAVDMISEFGAEFDSKQAAIATAVVRVIC
CMVFCVVLIFVRRRRIMIVSGIGSGLFCLVLSVYQYARFDQPKMSYDVFV
GAGCLLGYIIFNTALMVMPGIMIGELFPARIRGRTAGGVFASMNVALFIF
AKKFPALQAMLKMRGVFLVFGVSSFLLTAFMCLFQPETKGRSLEHIEDYF
NGDNWLWFRRDRGYKTVNLQPLEPLKDTRGLEA*

BS15963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 533 CG4797-PB 1..533 1..533 2726 100 Plus
Tret1-2-PA 488 CG8234-PA 28..466 58..497 587 31.6 Plus
Tret1-1-PB 489 CG30035-PB 28..485 58..522 573 30.5 Plus
Tret1-1-PA 857 CG30035-PA 396..853 58..522 573 30.5 Plus
CG8249-PC 521 CG8249-PC 12..496 24..500 476 29.2 Plus