Clone Sequence Records
BS15965.3prime Sequence
912 bp (824 high quality bases) assembled on 2007-04-16
> BS15965.3prime
ATGGTCTAGAAAGCTTTCAGTGACCATTGCCGTTAGTGGCCAGCTTGGCG
GACCCATTGGAGTGTCCATTGGCATGGAGCTTCTTTCCATTGGTGACCGA
TTCCACGGAGCAGGGCTGGCCCAGGATCTTGACCCTCTTTAGAGGCGGCT
CATTTGTAATGGTAGAAAAGTCGAACCGCTGCTCCAGGGTCATGTGTGAG
ATGGGCGGCAGACCAATGCAGCCACGCAGGATATTCTCTATGGCGGCGCG
CTGGCGGAAGAGCGAGTTGACCACCTGGGAGCCCTGGGGCACCAGTGGAG
CCTTGCACAGATAGCTCAGCAGGGAAAGCACTGGCTTGAAGGGAACCCAC
GGGGCGGATTCCTTCTCCGCATTGCGCAGCTGGATGCGAGTGCTCAGCTC
GCCGAGGATAACCAGGTCCAGAATGAGCGGTGTGGCCAGCAGCGAGTCCT
CGCAGGTGTTGTGGATCACCAGGGTGTTGTGGCCGCCCATCATGATCTCC
GATGTGTACTCATCCATGGCCCGCTTGCTGTCGCCCACATAGGGCACGTA
CTTGATTACCACGACGTGGTCGGGGTGCTCATCGGGTCCGTACAACAGCC
TGTTGGAGGCAACCATGTCGTCCACCACGTTGCTCTTGGAAATCTCCTTG
GAGCGGAACTGTTGAGGAGCGGACAAGTTCTTGCCATCGTTGTTGCCCAG
ATGGTTGTAACTGGCAATGGACACCGGCTTGATACCAGCTCCCACCAGGA
AATCTACCAACACGCTCTTGATCTTGGTCTGACCGGACTTGAAGTCATCG
CCGGCAATGAAAACATTCTTCTCCTCGGCCAGCTGGATCAGTCCGGGCAC
AAAGGTGTTCTGCGGAGAGCCGTTGATGTAGGTGCACCCCTCGGCGATGC
TGGGCATTGCGA
BS15965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11143-PA | 1698 | Inos-RA | 803..1698 | 912..17 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inos-RA | 1986 | CG11143-RA | 940..1835 | 912..17 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7455302..7455771 | 176..645 | 2350 | 100 | Plus |
| 2R | 25286936 | 2R | 7455834..7456077 | 644..887 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 7455073..7455232 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:14:10 has no hits.
BS15965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:48 Download gff for
BS15965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11143-PA | 804..1698 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:35 Download gff for
BS15965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 941..1835 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:41 Download gff for
BS15965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 941..1835 | 17..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:41 Download gff for
BS15965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7455073..7455231 | 17..175 | 100 | <- | Plus |
| 2R | 7455302..7455769 | 176..643 | 100 | <- | Plus |
| 2R | 7455834..7456076 | 644..886 | 100 | <- | Plus |
| 2R | 7456149..7456173 | 887..911 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:35 Download gff for
BS15965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3342578..3342736 | 17..175 | 100 | <- | Plus |
| arm_2R | 3342807..3343274 | 176..643 | 100 | <- | Plus |
| arm_2R | 3343339..3343581 | 644..886 | 100 | <- | Plus |
| arm_2R | 3343654..3343678 | 887..911 | 96 | | Plus |
BS15965.5prime Sequence
891 bp (863 high quality bases) assembled on 2007-04-16
> BS15965.5prime
GAAGTTATCAGTCGACATGAAGCCCACCAATAACTCAACCCTGGAGGTAA
TCTCGCCGAAAGTGCAGGTGGACGATGAGTTCATCACCACCGACTACGAT
TACCAGACATCCCATGTGAAGCGCACCGCCGATGGACAGCTCCAGGTGCA
CCCCCAGACGACGTCGCTGAAGATACGGACGGGTCGCCATGTGCCCAAGC
TGGGCGTGATGCTGGTGGGATGGGGTGGCAACAACGGATCCACGCTGACC
GCCGCCCTGGAGGCCAATCGTCGCCAGCTGAAGTGGCGCAAGCGGACGGG
CGTCCAGGAGGCCAACTGGTATGGTTCCATTACACAGGCGTCCACCGTCT
TCATTGGATCCGATGAGGACGGCGGTGACGTGTACGTGCCCATGAAGGAG
CTGCTGCCCATGGTGGAGCCCGACAACATTATCGTGGATGGCTGGGATAT
CAGTGGCCTGCATTTGGGCGACGCCATGCGCAGGGCCGAGGTCCTAGACG
TGGCTCTGCAGGATCAGATCTACGATCAGTTGGCTCAGTTGCGCCCACGT
CCATCCATCTACGACCCCGACTTCATCGCGGCCAATCAGTCGGATCGGGC
TGACAACGTGATCCGTGGCACTCGTCTGGAGCAGTACGAGCAAATCCGGA
AGGACATCCGCGACTTCCGCGAGCGCAGTGGCGTCGATTCGGTCATCGTC
CTCTGGACTGCCAACACGGAGCGCTTCGCGGATGTCCAGCCTGGTCTGAA
CACCACCAGCCAGGAGCTCATCGCCTCCCTGGAGGCCAACCACTCGGAGG
TGTCACCCTCCACGATCTTCGCAATGGCCAGCATCGCCGAGGGGTGCACC
TACATCAACGGCTCTCCGCAAAACACTTTTGTGCCCGGACT
BS15965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11143-PA | 1698 | Inos-RA | 1..875 | 17..891 | 4325 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inos-RA | 1986 | CG11143-RA | 138..1012 | 17..891 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7456149..7456850 | 844..143 | 3510 | 100 | Minus |
| 2R | 25286936 | 2R | 7458607..7458737 | 147..17 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 7456030..7456077 | 891..844 | 210 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:14:24 has no hits.
BS15965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:49 Download gff for
BS15965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11143-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:38 Download gff for
BS15965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 134..1012 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:30 Download gff for
BS15965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 134..1012 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:30 Download gff for
BS15965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7456030..7456076 | 845..891 | 95 | <- | Minus |
| 2R | 7456149..7456847 | 146..844 | 100 | <- | Minus |
| 2R | 7458609..7458741 | 9..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:38 Download gff for
BS15965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3343535..3343581 | 845..891 | 95 | <- | Minus |
| arm_2R | 3343654..3344352 | 146..844 | 100 | <- | Minus |
| arm_2R | 3346114..3346246 | 9..145 | 97 | | Minus |
BS15965.complete Sequence
1730 bp assembled on 2007-05-07
GenBank Submission: FJ637998
> BS15965.complete
GAAGTTATCAGTCGACATGAAGCCCACCAATAACTCAACCCTGGAGGTAA
TCTCGCCGAAAGTGCAGGTGGACGATGAGTTCATCACCACCGACTACGAT
TACCAGACATCCCATGTGAAGCGCACCGCCGATGGACAGCTCCAGGTGCA
CCCCCAGACGACGTCGCTGAAGATACGGACGGGTCGCCATGTGCCCAAGC
TGGGCGTGATGCTGGTGGGATGGGGTGGCAACAACGGATCCACGCTGACC
GCCGCCCTGGAGGCCAATCGTCGCCAGCTGAAGTGGCGCAAGCGGACGGG
CGTCCAGGAGGCCAACTGGTATGGTTCCATTACACAGGCGTCCACCGTCT
TCATTGGATCCGATGAGGACGGCGGTGACGTGTACGTGCCCATGAAGGAG
CTGCTGCCCATGGTGGAGCCCGACAACATTATCGTGGATGGCTGGGATAT
CAGTGGCCTGCATTTGGGCGACGCCATGCGCAGGGCCGAGGTCCTAGACG
TGGCTCTGCAGGATCAGATCTACGATCAGTTGGCTCAGTTGCGCCCACGT
CCATCCATCTACGACCCCGACTTCATCGCGGCCAATCAGTCGGATCGGGC
TGACAACGTGATCCGTGGCACTCGTCTGGAGCAGTACGAGCAAATCCGGA
AGGACATCCGCGACTTCCGCGAGCGCAGTGGCGTCGATTCGGTCATCGTC
CTCTGGACTGCCAACACGGAGCGCTTCGCGGATGTCCAGCCTGGTCTGAA
CACCACCAGCCAGGAGCTCATCGCCTCCCTGGAGGCCAACCACTCGGAGG
TGTCACCCTCCACGATCTTCGCAATGGCCAGCATCGCCGAGGGGTGCACC
TACATCAACGGCTCTCCGCAGAACACCTTTGTGCCCGGACTGATCCAGCT
GGCCGAGGAGAAGAATGTTTTCATTGCCGGCGATGACTTCAAGTCCGGTC
AGACCAAGATCAAGAGCGTGTTGGTAGATTTCCTGGTGGGAGCTGGTATC
AAGCCGGTGTCCATTGCCAGTTACAACCATCTGGGCAACAACGATGGCAA
GAACTTGTCCGCTCCTCAACAGTTCCGCTCCAAGGAGATTTCCAAGAGCA
ACGTGGTGGACGACATGGTTGCCTCCAACAGGCTGTTGTACGGACCCGAT
GAGCACCCCGACCACGTCGTGGTAATCAAGTACGTGCCCTATGTGGGCGA
CAGCAAGCGGGCCATGGATGAGTACACATCGGAGATCATGATGGGCGGCC
ACAACACCCTGGTGATCCACAACACCTGCGAGGACTCGCTGCTGGCCACA
CCGCTCATTCTGGACCTGGTTATCCTCGGCGAGCTGAGCACTCGCATCCA
GCTGCGCAATGCGGAGAAGGAATCCGCCCCGTGGGTTCCCTTCAAGCCAG
TGCTTTCCCTGCTGAGCTATCTGTGCAAGGCTCCACTGGTGCCCCAGGGC
TCCCAGGTGGTCAACTCGCTCTTCCGCCAGCGCGCCGCCATAGAGAATAT
CCTGCGTGGCTGCATTGGTCTGCCGCCCATCTCACACATGACCCTGGAGC
AGCGGTTCGACTTTTCTACCATTACAAATGAGCCGCCTCTAAAGAGGGTC
AAGATCCTGGGCCAGCCCTGCTCCGTGGAATCGGTCACCAATGGAAAGAA
GCTCCATGCCAATGGACACTCCAATGGGTCCGCCAAGCTGGCCACTAACG
GCAATGGTCACTGAAAGCTTTCTAGACCAT
BS15965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inos-RA | 1698 | CG11143-PA | 1..1698 | 17..1714 | 8490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inos-RA | 1986 | CG11143-RA | 138..1835 | 17..1714 | 8490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7456149..7456850 | 844..143 | 3510 | 100 | Minus |
| 2R | 25286936 | 2R | 7455302..7455771 | 1555..1086 | 2350 | 100 | Minus |
| 2R | 25286936 | 2R | 7455834..7456077 | 1087..844 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 7455073..7455232 | 1714..1555 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 7458607..7458737 | 147..17 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:53 has no hits.
BS15965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:25 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 1..1698 | 17..1714 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:23 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 123..1824 | 9..1714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:43 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 138..1834 | 17..1713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:25 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 123..1824 | 9..1714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:17 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inos-RA | 138..1834 | 17..1713 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:17 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7455834..7456076 | 845..1087 | 100 | <- | Minus |
| 2R | 7455074..7455231 | 1556..1713 | 100 | <- | Minus |
| 2R | 7455302..7455769 | 1088..1555 | 100 | <- | Minus |
| 2R | 7456149..7456847 | 146..844 | 100 | <- | Minus |
| 2R | 7458609..7458737 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:43 Download gff for
BS15965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3342579..3342736 | 1556..1713 | 100 | <- | Minus |
| arm_2R | 3342807..3343274 | 1088..1555 | 100 | <- | Minus |
| arm_2R | 3343339..3343581 | 845..1087 | 100 | <- | Minus |
| arm_2R | 3343654..3344352 | 146..844 | 100 | <- | Minus |
| arm_2R | 3346114..3346242 | 17..145 | 100 | | Minus |
BS15965.pep Sequence
Translation from 16 to 1713
> BS15965.pep
MKPTNNSTLEVISPKVQVDDEFITTDYDYQTSHVKRTADGQLQVHPQTTS
LKIRTGRHVPKLGVMLVGWGGNNGSTLTAALEANRRQLKWRKRTGVQEAN
WYGSITQASTVFIGSDEDGGDVYVPMKELLPMVEPDNIIVDGWDISGLHL
GDAMRRAEVLDVALQDQIYDQLAQLRPRPSIYDPDFIAANQSDRADNVIR
GTRLEQYEQIRKDIRDFRERSGVDSVIVLWTANTERFADVQPGLNTTSQE
LIASLEANHSEVSPSTIFAMASIAEGCTYINGSPQNTFVPGLIQLAEEKN
VFIAGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAP
QQFRSKEISKSNVVDDMVASNRLLYGPDEHPDHVVVIKYVPYVGDSKRAM
DEYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELSTRIQLRNAE
KESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCI
GLPPISHMTLEQRFDFSTITNEPPLKRVKILGQPCSVESVTNGKKLHANG
HSNGSAKLATNGNGH*
BS15965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inos-PA | 565 | CG11143-PA | 1..565 | 1..565 | 2921 | 100 | Plus |
