Clone BS15968 Report

Search the DGRC for BS15968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRpII18-RA
Protein status:BS15968.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15968.3prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS15968.3prime
ATGGTCTAGAAAGCTTCTAGTTGTCCACCATGATGAGCTCGTCGATGCTC
CAGTCCTCGTAGGAGTGATCCGGCAGGTATCGGCGGATGATGATGGGAAT
TTTCTTTTGTTTCAGCTCTTTCATGGCGATCTGCAGGGGGTCCGTTTCCC
CGTCCAGCTCCACCATGATGGGTGCGCACATGGCGATCTGAAGCGCTCGT
GTGCCCAGAACTCTGGCGCGCTCGTATTTCGTCATGTACTTTGTGGTAAT
GCGCTTGGACTTGGGCACACCGCCTCCGCCCGCACCACCGGGAGCTATGA
TCTCGATGTTGTCCGCCTCCTCCTCCTGGTTAATGTCCTCGTCCACGTCC
TCGTCGACGTCGTCGAAGTCATCGCCGCCAACGTCGTCGTTGTCGTAGTC
CGCATCATCCATGTCGACTGATAACT

BS15968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1163-PA 396 RpII18-RA 1..396 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..488 412..17 1980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372344 383..17 1835 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:38:16 has no hits.

BS15968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:50 Download gff for BS15968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:13 Download gff for BS15968.3prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..488 17..420 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:52:48 Download gff for BS15968.3prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..488 17..420 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:52:48 Download gff for BS15968.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5371882..5371915 384..420 91 -> Minus
3R 5371978..5372344 17..383 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:13 Download gff for BS15968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197604..1197637 384..420 91 -> Minus
arm_3R 1197700..1198066 17..383 100   Minus

BS15968.5prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS15968.5prime
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACTAGAAGCTTTCTAGACC

BS15968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1163-PA 396 RpII18-RA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..488 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372344 46..412 1835 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:13:32 has no hits.

BS15968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:51 Download gff for BS15968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:57 Download gff for BS15968.5prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..488 9..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:40 Download gff for BS15968.5prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..488 9..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:40 Download gff for BS15968.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5371978..5372344 46..412 100   Plus
3R 5371882..5371915 9..45 91 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:57 Download gff for BS15968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197604..1197637 9..45 91 -> Plus
arm_3R 1197700..1198066 46..412 100   Plus

BS15968.complete Sequence

428 bp assembled on 2007-05-07

GenBank Submission: FJ637999

> BS15968.complete
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACTAGAAGCTTTCTAGACCAT

BS15968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 396 CG1163-PA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..488 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372344 46..412 1835 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:32:33 has no hits.

BS15968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:24 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:43 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 85..485 9..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:44 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 93..488 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:24 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 85..485 9..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:37 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 93..488 17..412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:37 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5371887..5371915 17..45 100 -> Plus
3R 5371978..5372344 46..412 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:44 Download gff for BS15968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197609..1197637 17..45 100 -> Plus
arm_3R 1197700..1198066 46..412 100   Plus

BS15968.pep Sequence

Translation from 16 to 411

> BS15968.pep
MDDADYDNDDVGGDDFDDVDEDVDEDINQEEEADNIEIIAPGGAGGGGVP
KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKEL
KQKKIPIIIRRYLPDHSYEDWSIDELIMVDN*

BS15968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-PA 131 CG1163-PA 1..131 1..131 686 100 Plus