Clone Sequence Records
BS15968.3prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS15968.3prime
ATGGTCTAGAAAGCTTCTAGTTGTCCACCATGATGAGCTCGTCGATGCTC
CAGTCCTCGTAGGAGTGATCCGGCAGGTATCGGCGGATGATGATGGGAAT
TTTCTTTTGTTTCAGCTCTTTCATGGCGATCTGCAGGGGGTCCGTTTCCC
CGTCCAGCTCCACCATGATGGGTGCGCACATGGCGATCTGAAGCGCTCGT
GTGCCCAGAACTCTGGCGCGCTCGTATTTCGTCATGTACTTTGTGGTAAT
GCGCTTGGACTTGGGCACACCGCCTCCGCCCGCACCACCGGGAGCTATGA
TCTCGATGTTGTCCGCCTCCTCCTCCTGGTTAATGTCCTCGTCCACGTCC
TCGTCGACGTCGTCGAAGTCATCGCCGCCAACGTCGTCGTTGTCGTAGTC
CGCATCATCCATGTCGACTGATAACT
BS15968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1163-PA | 396 | RpII18-RA | 1..396 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..488 | 412..17 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372344 | 383..17 | 1835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:16 has no hits.
BS15968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:50 Download gff for
BS15968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:13 Download gff for
BS15968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..488 | 17..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:52:48 Download gff for
BS15968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..488 | 17..420 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:52:48 Download gff for
BS15968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371882..5371915 | 384..420 | 91 | -> | Minus |
3R | 5371978..5372344 | 17..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:13 Download gff for
BS15968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197604..1197637 | 384..420 | 91 | -> | Minus |
arm_3R | 1197700..1198066 | 17..383 | 100 | | Minus |
BS15968.5prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS15968.5prime
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACTAGAAGCTTTCTAGACC
BS15968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1163-PA | 396 | RpII18-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..488 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372344 | 46..412 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:32 has no hits.
BS15968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:51 Download gff for
BS15968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:57 Download gff for
BS15968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..488 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:40 Download gff for
BS15968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..488 | 9..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:40 Download gff for
BS15968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371978..5372344 | 46..412 | 100 | | Plus |
3R | 5371882..5371915 | 9..45 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:57 Download gff for
BS15968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197604..1197637 | 9..45 | 91 | -> | Plus |
arm_3R | 1197700..1198066 | 46..412 | 100 | | Plus |
BS15968.complete Sequence
428 bp assembled on 2007-05-07
GenBank Submission: FJ637999
> BS15968.complete
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACTAGAAGCTTTCTAGACCAT
BS15968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 396 | CG1163-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..488 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372344 | 46..412 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:33 has no hits.
BS15968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:24 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:43 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 85..485 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:44 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 93..488 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:24 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 85..485 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:37 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 93..488 | 17..412 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:37 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371887..5371915 | 17..45 | 100 | -> | Plus |
3R | 5371978..5372344 | 46..412 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:44 Download gff for
BS15968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197609..1197637 | 17..45 | 100 | -> | Plus |
arm_3R | 1197700..1198066 | 46..412 | 100 | | Plus |
BS15968.pep Sequence
Translation from 16 to 411
> BS15968.pep
MDDADYDNDDVGGDDFDDVDEDVDEDINQEEEADNIEIIAPGGAGGGGVP
KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKEL
KQKKIPIIIRRYLPDHSYEDWSIDELIMVDN*
BS15968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-PA | 131 | CG1163-PA | 1..131 | 1..131 | 686 | 100 | Plus |