Clone BS15969 Report

Search the DGRC for BS15969

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG31548-RA
Protein status:BS15969.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15969.3prime Sequence

795 bp (728 high quality bases) assembled on 2007-04-16

> BS15969.3prime
ATGGTCTAGAAAGCTTTTAGCGTGGGCACATGGCATGGCGACCGCCGTCC
ACCGGCAGGCTGACTCCAGTGCTGAAGCTGGCCTCATCGCTGGCCAGGAA
GGCAATGGCCGCAGCCACCTCCTTGACATCTCCAGGACGACCCAAGGCAT
GGGTGGTCTTGGAGTGTTCCAGGAACTTTTTGTACGTCTCCGCATCCATG
CCGCCGCGGGCATGCAGATTGGTGACCGTCACGCCGGGATTCACGCAGTT
CACGCGCACACCCTTGGCAGCCAGCTCCAACGCCACACAGCGGGTGAACT
GATCCACTCCCATTTTGGATATGTTGTAGGCCAGAACGCCAGGGAAGGAG
CGAATCCCATTGACACTGGACACGTTCACGATGTTGCCCTTGGTCTTGAC
CAGCTCGGGGGTGGCCAGCATAGTAAGGTGGTAGATTGCCCTCAGGTTGG
TGTTCATGACGCGGTCGTACTGCTCCAGGCTAGTCGTCTCGATGGTGCCC
GTCTCGATGATTCCGGCATTGTTGACCAGCACATCCAATTTGCCGTACTG
CTGCAGGGTTTCCGACCAAATCCTCTGGGTGTCCGCCTCCTTGGCAATGT
CGCCCACCACCAGGGCCGGCTGTGATTGGCTCACCTTGCTGCACTCAGCG
GCTACCTTCTTCAGGTTCTCCACATTGCGTCCATTGAGAGCCAGACAGGC
GCCGTACTTGGCAAACTTAATGGCGGTTGCAACTCCGATTCCGGAGCTTG
CTTCCGTAATAAGGAACACTTTGCCCGCGAAATTCATGTCAACTG

BS15969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-PA 771 CG31548-RA 1..771 787..17 3780 99.6 Minus
CG12171-PA 774 CG12171-RA 636..767 155..24 385 91.6 Minus
CG31549-PA 774 CG31549-RA 613..718 178..73 305 91.5 Minus
CG31549-PA 774 CG31549-RA 370..429 421..362 150 90 Minus
CG12171-PA 774 CG12171-RA 512..560 279..231 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-RA 952 CG31548-RA 47..818 788..17 3815 99.6 Minus
CG12171-RA 1014 CG12171-RA 324..832 532..24 985 79.8 Minus
CG31549-RB 991 CG31549-RB 321..832 535..24 880 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5636035..5636806 17..788 3815 99.6 Plus
3R 32079331 3R 5633950..5634458 532..24 985 79.6 Minus
Blast to na_te.dros performed on 2015-02-05 02:29:21 has no hits.

BS15969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:51 Download gff for BS15969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-PA 1..771 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:46 Download gff for BS15969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 42..818 17..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:28 Download gff for BS15969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 42..818 17..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:28 Download gff for BS15969.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5636035..5636811 17..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:46 Download gff for BS15969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1461757..1462533 17..795 99   Plus

BS15969.5prime Sequence

801 bp (718 high quality bases) assembled on 2007-04-16

> BS15969.5prime
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCTAAAAGCTTTCTAGAC
C

BS15969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-PA 771 CG31548-RA 1..771 17..787 3855 100 Plus
CG12171-PA 774 CG12171-RA 636..767 649..780 385 91.6 Plus
CG31549-PA 774 CG31549-RA 613..718 626..731 305 91.5 Plus
CG31549-PA 774 CG31549-RA 370..429 383..442 150 90 Plus
CG12171-PA 774 CG12171-RA 512..560 525..573 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-RA 952 CG31548-RA 47..818 16..787 3860 100 Plus
CG12171-RA 1014 CG12171-RA 324..832 272..780 985 79.8 Plus
CG31549-RB 991 CG31549-RB 321..832 269..780 880 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5636035..5636806 787..16 3860 100 Minus
3R 32079331 3R 5633950..5634458 272..780 985 79.6 Plus
Blast to na_te.dros performed on 2015-02-13 06:24:29 has no hits.

BS15969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for BS15969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:41 Download gff for BS15969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 40..818 7..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:27 Download gff for BS15969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 40..818 7..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:27 Download gff for BS15969.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5636035..5636813 7..787 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:41 Download gff for BS15969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1461757..1462535 7..787 99   Minus

BS15969.complete Sequence

803 bp assembled on 2007-05-07

GenBank Submission: FJ638000

> BS15969.complete
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCTAAAAGCTTTCTAGAC
CAT

BS15969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-RA 771 CG31548-PA 1..771 17..787 3855 100 Plus
CG12171-RA 774 CG12171-PA 259..767 272..780 985 79.6 Plus
CG31549-RB 774 CG31549-PB 256..767 269..780 880 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-RA 952 CG31548-RA 47..818 16..787 3860 100 Plus
CG12171-RA 1014 CG12171-RA 324..832 272..780 985 79.6 Plus
CG31549-RB 991 CG31549-RB 321..832 269..780 880 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5636035..5636806 787..16 3860 100 Minus
3R 32079331 3R 5633950..5634458 272..780 985 79.6 Plus
Blast to na_te.dros performed on 2014-11-27 13:09:05 has no hits.

BS15969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:20 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:18 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 33..811 7..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:00:58 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 48..816 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:20 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 33..811 7..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:00 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
CG31548-RA 48..816 17..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:00 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5636037..5636805 17..785 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:00:58 Download gff for BS15969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1461759..1462527 17..785 100   Minus

BS15969.pep Sequence

Translation from 16 to 786

> BS15969.pep
MNFAGKVVLITGASSGIGAATAIKFAKYGACLALNGRNVENLKKVAAECS
KVSQSQPALVVGDIAKEADTQRIWSETLQQYGKLDVLVNNAGIIETGTIE
TTSLEQYDRVMNTNLRAIYHLTMLATPELVKTKGNIVNVSSVNGIRSFPG
VLAYNISKMGVDQFTRCVALELAAKGVRVNCVNPGVTVTNLHARGGMDAE
TYKKFLEHSKTTHALGRPGDVKEVAAAIAFLASDEASFSTGVSLPVDGGR
HAMCPR*

BS15969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31548-PA 256 CG31548-PA 1..256 1..256 1295 100 Plus
CG31549-PB 257 CG31549-PB 3..257 2..256 914 69 Plus
CG31549-PA 257 CG31549-PA 3..257 2..256 914 69 Plus
CG12171-PA 257 CG12171-PA 3..257 2..256 901 68.6 Plus
CG31546-PA 264 CG31546-PA 9..264 1..256 716 57.6 Plus