Clone Sequence Records
BS15969.3prime Sequence
795 bp (728 high quality bases) assembled on 2007-04-16
> BS15969.3prime
ATGGTCTAGAAAGCTTTTAGCGTGGGCACATGGCATGGCGACCGCCGTCC
ACCGGCAGGCTGACTCCAGTGCTGAAGCTGGCCTCATCGCTGGCCAGGAA
GGCAATGGCCGCAGCCACCTCCTTGACATCTCCAGGACGACCCAAGGCAT
GGGTGGTCTTGGAGTGTTCCAGGAACTTTTTGTACGTCTCCGCATCCATG
CCGCCGCGGGCATGCAGATTGGTGACCGTCACGCCGGGATTCACGCAGTT
CACGCGCACACCCTTGGCAGCCAGCTCCAACGCCACACAGCGGGTGAACT
GATCCACTCCCATTTTGGATATGTTGTAGGCCAGAACGCCAGGGAAGGAG
CGAATCCCATTGACACTGGACACGTTCACGATGTTGCCCTTGGTCTTGAC
CAGCTCGGGGGTGGCCAGCATAGTAAGGTGGTAGATTGCCCTCAGGTTGG
TGTTCATGACGCGGTCGTACTGCTCCAGGCTAGTCGTCTCGATGGTGCCC
GTCTCGATGATTCCGGCATTGTTGACCAGCACATCCAATTTGCCGTACTG
CTGCAGGGTTTCCGACCAAATCCTCTGGGTGTCCGCCTCCTTGGCAATGT
CGCCCACCACCAGGGCCGGCTGTGATTGGCTCACCTTGCTGCACTCAGCG
GCTACCTTCTTCAGGTTCTCCACATTGCGTCCATTGAGAGCCAGACAGGC
GCCGTACTTGGCAAACTTAATGGCGGTTGCAACTCCGATTCCGGAGCTTG
CTTCCGTAATAAGGAACACTTTGCCCGCGAAATTCATGTCAACTG
BS15969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 771 | CG31548-RA | 1..771 | 787..17 | 3780 | 99.6 | Minus |
CG12171-PA | 774 | CG12171-RA | 636..767 | 155..24 | 385 | 91.6 | Minus |
CG31549-PA | 774 | CG31549-RA | 613..718 | 178..73 | 305 | 91.5 | Minus |
CG31549-PA | 774 | CG31549-RA | 370..429 | 421..362 | 150 | 90 | Minus |
CG12171-PA | 774 | CG12171-RA | 512..560 | 279..231 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..818 | 788..17 | 3815 | 99.6 | Minus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 532..24 | 985 | 79.8 | Minus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 535..24 | 880 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636035..5636806 | 17..788 | 3815 | 99.6 | Plus |
3R | 32079331 | 3R | 5633950..5634458 | 532..24 | 985 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:29:21 has no hits.
BS15969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:51 Download gff for
BS15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:46 Download gff for
BS15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 42..818 | 17..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:28 Download gff for
BS15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 42..818 | 17..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:28 Download gff for
BS15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636035..5636811 | 17..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:46 Download gff for
BS15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461757..1462533 | 17..795 | 99 | | Plus |
BS15969.5prime Sequence
801 bp (718 high quality bases) assembled on 2007-04-16
> BS15969.5prime
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCTAAAAGCTTTCTAGAC
C
BS15969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 771 | CG31548-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG12171-PA | 774 | CG12171-RA | 636..767 | 649..780 | 385 | 91.6 | Plus |
CG31549-PA | 774 | CG31549-RA | 613..718 | 626..731 | 305 | 91.5 | Plus |
CG31549-PA | 774 | CG31549-RA | 370..429 | 383..442 | 150 | 90 | Plus |
CG12171-PA | 774 | CG12171-RA | 512..560 | 525..573 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..818 | 16..787 | 3860 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 272..780 | 985 | 79.8 | Plus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 269..780 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636035..5636806 | 787..16 | 3860 | 100 | Minus |
3R | 32079331 | 3R | 5633950..5634458 | 272..780 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:24:29 has no hits.
BS15969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for
BS15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:41 Download gff for
BS15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 7..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:27 Download gff for
BS15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 7..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:27 Download gff for
BS15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636035..5636813 | 7..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:41 Download gff for
BS15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461757..1462535 | 7..787 | 99 | | Minus |
BS15969.complete Sequence
803 bp assembled on 2007-05-07
GenBank Submission: FJ638000
> BS15969.complete
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCTAAAAGCTTTCTAGAC
CAT
BS15969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 771 | CG31548-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG12171-RA | 774 | CG12171-PA | 259..767 | 272..780 | 985 | 79.6 | Plus |
CG31549-RB | 774 | CG31549-PB | 256..767 | 269..780 | 880 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..818 | 16..787 | 3860 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 272..780 | 985 | 79.6 | Plus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 269..780 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636035..5636806 | 787..16 | 3860 | 100 | Minus |
3R | 32079331 | 3R | 5633950..5634458 | 272..780 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:09:05 has no hits.
BS15969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:20 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:18 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 33..811 | 7..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:00:58 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 48..816 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:20 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 33..811 | 7..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:00 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 48..816 | 17..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:00 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636037..5636805 | 17..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:00:58 Download gff for
BS15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461759..1462527 | 17..785 | 100 | | Minus |
BS15969.pep Sequence
Translation from 16 to 786
> BS15969.pep
MNFAGKVVLITGASSGIGAATAIKFAKYGACLALNGRNVENLKKVAAECS
KVSQSQPALVVGDIAKEADTQRIWSETLQQYGKLDVLVNNAGIIETGTIE
TTSLEQYDRVMNTNLRAIYHLTMLATPELVKTKGNIVNVSSVNGIRSFPG
VLAYNISKMGVDQFTRCVALELAAKGVRVNCVNPGVTVTNLHARGGMDAE
TYKKFLEHSKTTHALGRPGDVKEVAAAIAFLASDEASFSTGVSLPVDGGR
HAMCPR*
BS15969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 256 | CG31548-PA | 1..256 | 1..256 | 1295 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 3..257 | 2..256 | 914 | 69 | Plus |
CG31549-PA | 257 | CG31549-PA | 3..257 | 2..256 | 914 | 69 | Plus |
CG12171-PA | 257 | CG12171-PA | 3..257 | 2..256 | 901 | 68.6 | Plus |
CG31546-PA | 264 | CG31546-PA | 9..264 | 1..256 | 716 | 57.6 | Plus |