Clone Sequence Records
BS15971.3prime Sequence
873 bp (831 high quality bases) assembled on 2007-04-16
> BS15971.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTAGATGTCCTCGATGGGATAAGCG
GTTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTC
GGCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACC
GCTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGA
GGGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGAT
GCAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCA
TGCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGT
GAGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCC
GGTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGAT
AGCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCC
AGGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAG
ATTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGG
CGTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTG
TGCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCAC
GCCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCT
GCGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCA
CTGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCGGGACTGGAGTC
CTCGTCCATCAAGTAGCCGCATT
BS15971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PA | 1452 | Aplip1-RA | 596..1452 | 873..17 | 4260 | 99.8 | Minus |
CG1200-PB | 1473 | Aplip1-RB | 617..1473 | 873..17 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 843..1699 | 873..17 | 4270 | 99.9 | Minus |
Aplip1-RA | 2390 | CG1200-RA | 822..1678 | 873..17 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197635..1198230 | 873..278 | 2965 | 99.8 | Minus |
3L | 28110227 | 3L | 1198299..1198486 | 277..90 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1198554..1198627 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:00:46 has no hits.
BS15971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for
BS15971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 617..1473 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:38 Download gff for
BS15971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 822..1687 | 6..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:11 Download gff for
BS15971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 822..1687 | 6..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:11 Download gff for
BS15971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1198299..1198486 | 90..277 | 100 | -> | Minus |
3L | 1198555..1198636 | 6..89 | 95 | | Minus |
3L | 1197635..1198230 | 278..873 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:38 Download gff for
BS15971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1197635..1198230 | 278..873 | 99 | -> | Minus |
arm_3L | 1198299..1198486 | 90..277 | 100 | -> | Minus |
arm_3L | 1198555..1198636 | 6..89 | 95 | | Minus |
BS15971.5prime Sequence
902 bp (823 high quality bases) assembled on 2007-04-16
> BS15971.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCAACGGT
GGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGCTCATT
TCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCCGGATT
CGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCACGGCG
CATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCTCCCGT
TTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGGCCAGC
TGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGCCGCGG
CACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTGCAAAA
GG
BS15971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PA | 1452 | Aplip1-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
CG1200-PB | 1473 | Aplip1-RB | 1..490 | 17..506 | 2450 | 100 | Plus |
CG1200-PB | 1473 | Aplip1-RB | 512..907 | 507..902 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RA | 2390 | CG1200-RA | 223..1112 | 13..902 | 4450 | 100 | Plus |
Aplip1-RB | 2411 | CG1200-RB | 223..1133 | 13..902 | 4230 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197530..1197925 | 507..902 | 1980 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197315 | 130..508 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:57:55 has no hits.
BS15971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for
BS15971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:20 Download gff for
BS15971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 219..1112 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:02 Download gff for
BS15971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 219..1112 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:02 Download gff for
BS15971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1197530..1197925 | 507..902 | 100 | | Plus |
3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:20 Download gff for
BS15971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197530..1197925 | 507..902 | 100 | | Plus |
BS15971.complete Sequence
1484 bp assembled on 2007-05-07
GenBank Submission: FJ638001
> BS15971.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCAACGGT
GGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGCTCATT
TCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCCGGATT
CGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCACGGCG
CATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCTCCCGT
TTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGGCCAGC
TGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGCCGCGG
CACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTGCAAAA
GGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACCGGAAGGC
AGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAACGAGTTC
GATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGGGCTACCT
CGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTTTGCCAGG
CGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGGACAGACG
TGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATCGATCGGG
CCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTACTTCTACT
CCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCACCGCTTC
ATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCTGCCACGT
CTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTGGGCCGTG
CTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCCCATCGAG
GACATCTACATTGAGTAGAAGCTTTCTAGACCAT
BS15971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RA | 1452 | CG1200-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Aplip1-RB | 1473 | CG1200-PB | 1..1473 | 17..1468 | 7015 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RA | 2390 | CG1200-RA | 223..1678 | 13..1468 | 7280 | 100 | Plus |
Aplip1-RB | 2411 | CG1200-RB | 223..1699 | 13..1468 | 7035 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197530..1198230 | 507..1207 | 3505 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197315 | 130..508 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 1198299..1198486 | 1208..1395 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
3L | 28110227 | 3L | 1198554..1198627 | 1395..1468 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:13:05 has no hits.
BS15971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:17 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 1..1452 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:15 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 215..1683 | 9..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:58 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 227..1678 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:18 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 215..1683 | 9..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:00 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 227..1678 | 17..1468 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:00 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
3L | 1197530..1198230 | 507..1207 | 100 | -> | Plus |
3L | 1198299..1198486 | 1208..1395 | 100 | -> | Plus |
3L | 1198555..1198627 | 1396..1468 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:58 Download gff for
BS15971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197530..1198230 | 507..1207 | 100 | -> | Plus |
arm_3L | 1198299..1198486 | 1208..1395 | 100 | -> | Plus |
arm_3L | 1198555..1198627 | 1396..1468 | 100 | | Plus |
BS15971.pep Sequence
Translation from 16 to 1467
> BS15971.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC
GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF
PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL
WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET
LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK
KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE
STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*
BS15971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-PA | 483 | CG1200-PA | 1..483 | 1..483 | 2582 | 100 | Plus |
Aplip1-PB | 490 | CG1200-PB | 1..490 | 1..483 | 2554 | 98.4 | Plus |