Clone BS15971 Report

Search the DGRC for BS15971

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptAplip1-RA
Protein status:BS15971.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15971.3prime Sequence

873 bp (831 high quality bases) assembled on 2007-04-16

> BS15971.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTAGATGTCCTCGATGGGATAAGCG
GTTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTC
GGCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACC
GCTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGA
GGGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGAT
GCAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCA
TGCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGT
GAGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCC
GGTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGAT
AGCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCC
AGGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAG
ATTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGG
CGTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTG
TGCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCAC
GCCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCT
GCGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCA
CTGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCGGGACTGGAGTC
CTCGTCCATCAAGTAGCCGCATT

BS15971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PA 1452 Aplip1-RA 596..1452 873..17 4260 99.8 Minus
CG1200-PB 1473 Aplip1-RB 617..1473 873..17 4260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 843..1699 873..17 4270 99.9 Minus
Aplip1-RA 2390 CG1200-RA 822..1678 873..17 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197635..1198230 873..278 2965 99.8 Minus
3L 28110227 3L 1198299..1198486 277..90 940 100 Minus
3L 28110227 3L 1198554..1198627 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:00:46 has no hits.

BS15971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for BS15971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 617..1473 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:38 Download gff for BS15971.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 822..1687 6..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:11 Download gff for BS15971.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 822..1687 6..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:11 Download gff for BS15971.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1198299..1198486 90..277 100 -> Minus
3L 1198555..1198636 6..89 95   Minus
3L 1197635..1198230 278..873 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:38 Download gff for BS15971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1197635..1198230 278..873 99 -> Minus
arm_3L 1198299..1198486 90..277 100 -> Minus
arm_3L 1198555..1198636 6..89 95   Minus

BS15971.5prime Sequence

902 bp (823 high quality bases) assembled on 2007-04-16

> BS15971.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCAACGGT
GGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGCTCATT
TCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCCGGATT
CGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCACGGCG
CATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCTCCCGT
TTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGGCCAGC
TGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGCCGCGG
CACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTGCAAAA
GG

BS15971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PA 1452 Aplip1-RA 1..886 17..902 4430 100 Plus
CG1200-PB 1473 Aplip1-RB 1..490 17..506 2450 100 Plus
CG1200-PB 1473 Aplip1-RB 512..907 507..902 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RA 2390 CG1200-RA 223..1112 13..902 4450 100 Plus
Aplip1-RB 2411 CG1200-RB 223..1133 13..902 4230 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197530..1197925 507..902 1980 100 Plus
3L 28110227 3L 1196937..1197315 130..508 1895 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:57:55 has no hits.

BS15971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:52 Download gff for BS15971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:20 Download gff for BS15971.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 219..1112 9..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:02 Download gff for BS15971.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 219..1112 9..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:02 Download gff for BS15971.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1197530..1197925 507..902 100   Plus
3L 1196535..1196655 9..129 98 -> Plus
3L 1196937..1197313 130..506 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:20 Download gff for BS15971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196535..1196655 9..129 98 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197530..1197925 507..902 100   Plus

BS15971.complete Sequence

1484 bp assembled on 2007-05-07

GenBank Submission: FJ638001

> BS15971.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCAACGGT
GGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGCTCATT
TCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCCGGATT
CGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCACGGCG
CATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCTCCCGT
TTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGGCCAGC
TGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGCCGCGG
CACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTGCAAAA
GGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACCGGAAGGC
AGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAACGAGTTC
GATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGGGCTACCT
CGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTTTGCCAGG
CGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGGACAGACG
TGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATCGATCGGG
CCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTACTTCTACT
CCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCACCGCTTC
ATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCTGCCACGT
CTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTGGGCCGTG
CTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCCCATCGAG
GACATCTACATTGAGTAGAAGCTTTCTAGACCAT

BS15971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RA 1452 CG1200-PA 1..1452 17..1468 7260 100 Plus
Aplip1-RB 1473 CG1200-PB 1..1473 17..1468 7015 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RA 2390 CG1200-RA 223..1678 13..1468 7280 100 Plus
Aplip1-RB 2411 CG1200-RB 223..1699 13..1468 7035 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197530..1198230 507..1207 3505 100 Plus
3L 28110227 3L 1196937..1197315 130..508 1895 100 Plus
3L 28110227 3L 1198299..1198486 1208..1395 940 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
3L 28110227 3L 1198554..1198627 1395..1468 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:13:05 has no hits.

BS15971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:17 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:15 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 215..1683 9..1479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:58 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 227..1678 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:18 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 215..1683 9..1479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:00 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 227..1678 17..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:00 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196937..1197313 130..506 100 -> Plus
3L 1196543..1196655 17..129 100 -> Plus
3L 1197530..1198230 507..1207 100 -> Plus
3L 1198299..1198486 1208..1395 100 -> Plus
3L 1198555..1198627 1396..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:58 Download gff for BS15971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196543..1196655 17..129 100 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197530..1198230 507..1207 100 -> Plus
arm_3L 1198299..1198486 1208..1395 100 -> Plus
arm_3L 1198555..1198627 1396..1468 100   Plus

BS15971.pep Sequence

Translation from 16 to 1467

> BS15971.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC
GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF
PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL
WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET
LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK
KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE
STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

BS15971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PA 483 CG1200-PA 1..483 1..483 2582 100 Plus
Aplip1-PB 490 CG1200-PB 1..490 1..483 2554 98.4 Plus