Clone Sequence Records
BS15972.3prime Sequence
420 bp (420 high quality bases) assembled on 2007-04-16
> BS15972.3prime
ATGGTCTAGAAAGCTTTTAACCAGTGAATAATTGAGCAAGCTTTGAACCC
AATTCTTCAAAGAATCCAGTTGCAAGGCCCTTCACACCTGGAGATACAAT
CTTTCCAACGATCCTCGCCTTTCGACCTCCCTGAATCGGAACTCCATCGA
TTATAATGGCATCCGTATGCTCGTTGACGAACTTATCGATACTCTCCCGT
TCCTCAGGGGTCAAACTGGGATATAAACGCCTATAGATGTCAAGTAGTTC
CTGGGTGCTATTGATTTTGGAGTCATCGTCCTGGGCGTTTTTGATAATTT
CAGCAATTCTAAGGTTGTCAGCCTCACGATCTTCGTCGGAATAGCCCATG
CATAGAGGACTAATCAGCAGCAGTGCAAAGCACATAAGAGCAGTTGAAGA
ATTCATGTCGACTGATAACT
BS15972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31509-PA | 390 | TotA-RA | 1..390 | 406..17 | 1950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..431 | 406..17 | 1950 | 100 | Minus |
TotC-RA | 530 | CG31508-RA | 69..398 | 382..53 | 390 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871552 | 383..17 | 1835 | 100 | Minus |
3R | 32079331 | 3R | 20873119..20873448 | 382..53 | 390 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:22 has no hits.
BS15972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:53 Download gff for
BS15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31509-PA | 1..390 | 17..406 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:15 Download gff for
BS15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 11..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:53:35 Download gff for
BS15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 11..406 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:53:35 Download gff for
BS15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871077..20871099 | 384..406 | 100 | -> | Minus |
3R | 20871186..20871556 | 11..383 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:15 Download gff for
BS15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 384..406 | 100 | -> | Minus |
arm_3R | 16696908..16697278 | 11..383 | 99 | | Minus |
BS15972.5prime Sequence
420 bp (420 high quality bases) assembled on 2007-04-16
> BS15972.5prime
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTTAAAAGCTTTCTAGACC
BS15972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31509-PA | 390 | TotA-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..431 | 17..406 | 1950 | 100 | Plus |
TotC-RA | 530 | CG31508-RA | 69..398 | 41..370 | 390 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871552 | 40..406 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 20873119..20873448 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:51:34 has no hits.
BS15972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:53 Download gff for
BS15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31509-PA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:05 Download gff for
BS15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:46 Download gff for
BS15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:46 Download gff for
BS15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871077..20871099 | 17..39 | 100 | -> | Plus |
3R | 20871186..20871556 | 40..412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:05 Download gff for
BS15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 17..39 | 100 | -> | Plus |
arm_3R | 16696908..16697278 | 40..412 | 99 | | Plus |
BS15972.complete Sequence
422 bp assembled on 2007-05-07
GenBank Submission: FJ638002
> BS15972.complete
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTTAAAAGCTTTCTAGACCAT
BS15972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 390 | CG31509-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
TotC-RA | 390 | CG31508-PA | 25..354 | 41..370 | 390 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..431 | 17..406 | 1950 | 100 | Plus |
TotC-RA | 530 | CG31508-RA | 69..398 | 41..370 | 390 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871552 | 40..406 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 20873119..20873448 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:11 has no hits.
BS15972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:16 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:13 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:15 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..429 | 17..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:16 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:05 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..429 | 17..404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:05 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871186..20871550 | 40..404 | 100 | | Plus |
3R | 20871077..20871099 | 17..39 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:15 Download gff for
BS15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 17..39 | 100 | -> | Plus |
arm_3R | 16696908..16697272 | 40..404 | 100 | | Plus |
BS15972.pep Sequence
Translation from 16 to 405
> BS15972.pep
MNSSTALMCFALLLISPLCMGYSDEDREADNLRIAEIIKNAQDDDSKINS
TQELLDIYRRLYPSLTPEERESIDKFVNEHTDAIIIDGVPIQGGRKARIV
GKIVSPGVKGLATGFFEELGSKLAQLFTG*
BS15972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-PA | 129 | CG31509-PA | 1..129 | 1..129 | 651 | 100 | Plus |
TotC-PA | 129 | CG31508-PA | 1..129 | 1..129 | 461 | 65.9 | Plus |
TotB-PA | 138 | CG5609-PA | 1..127 | 1..128 | 348 | 52.3 | Plus |