Clone BS15972 Report

Search the DGRC for BS15972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptTotA-RA
Protein status:BS15972.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15972.3prime Sequence

420 bp (420 high quality bases) assembled on 2007-04-16

> BS15972.3prime
ATGGTCTAGAAAGCTTTTAACCAGTGAATAATTGAGCAAGCTTTGAACCC
AATTCTTCAAAGAATCCAGTTGCAAGGCCCTTCACACCTGGAGATACAAT
CTTTCCAACGATCCTCGCCTTTCGACCTCCCTGAATCGGAACTCCATCGA
TTATAATGGCATCCGTATGCTCGTTGACGAACTTATCGATACTCTCCCGT
TCCTCAGGGGTCAAACTGGGATATAAACGCCTATAGATGTCAAGTAGTTC
CTGGGTGCTATTGATTTTGGAGTCATCGTCCTGGGCGTTTTTGATAATTT
CAGCAATTCTAAGGTTGTCAGCCTCACGATCTTCGTCGGAATAGCCCATG
CATAGAGGACTAATCAGCAGCAGTGCAAAGCACATAAGAGCAGTTGAAGA
ATTCATGTCGACTGATAACT

BS15972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31509-PA 390 TotA-RA 1..390 406..17 1950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..431 406..17 1950 100 Minus
TotC-RA 530 CG31508-RA 69..398 382..53 390 75.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871552 383..17 1835 100 Minus
3R 32079331 3R 20873119..20873448 382..53 390 74.5 Minus
Blast to na_te.dros performed on 2015-02-11 04:38:22 has no hits.

BS15972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:53 Download gff for BS15972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31509-PA 1..390 17..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:15 Download gff for BS15972.3prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 11..406 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:53:35 Download gff for BS15972.3prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 11..406 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:53:35 Download gff for BS15972.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20871077..20871099 384..406 100 -> Minus
3R 20871186..20871556 11..383 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:15 Download gff for BS15972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 384..406 100 -> Minus
arm_3R 16696908..16697278 11..383 99   Minus

BS15972.5prime Sequence

420 bp (420 high quality bases) assembled on 2007-04-16

> BS15972.5prime
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTTAAAAGCTTTCTAGACC

BS15972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31509-PA 390 TotA-RA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..431 17..406 1950 100 Plus
TotC-RA 530 CG31508-RA 69..398 41..370 390 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871552 40..406 1835 100 Plus
3R 32079331 3R 20873119..20873448 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2015-02-10 15:51:34 has no hits.

BS15972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:53 Download gff for BS15972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31509-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:05 Download gff for BS15972.5prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:46 Download gff for BS15972.5prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:46 Download gff for BS15972.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20871077..20871099 17..39 100 -> Plus
3R 20871186..20871556 40..412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:05 Download gff for BS15972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 17..39 100 -> Plus
arm_3R 16696908..16697278 40..412 99   Plus

BS15972.complete Sequence

422 bp assembled on 2007-05-07

GenBank Submission: FJ638002

> BS15972.complete
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTTAAAAGCTTTCTAGACCAT

BS15972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 390 CG31509-PA 1..390 17..406 1950 100 Plus
TotC-RA 390 CG31508-PA 25..354 41..370 390 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..431 17..406 1950 100 Plus
TotC-RA 530 CG31508-RA 69..398 41..370 390 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871552 40..406 1835 100 Plus
3R 32079331 3R 20873119..20873448 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:52:11 has no hits.

BS15972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:16 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:13 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:15 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..429 17..404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:16 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:05 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..429 17..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:05 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20871186..20871550 40..404 100   Plus
3R 20871077..20871099 17..39 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:15 Download gff for BS15972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 17..39 100 -> Plus
arm_3R 16696908..16697272 40..404 100   Plus

BS15972.pep Sequence

Translation from 16 to 405

> BS15972.pep
MNSSTALMCFALLLISPLCMGYSDEDREADNLRIAEIIKNAQDDDSKINS
TQELLDIYRRLYPSLTPEERESIDKFVNEHTDAIIIDGVPIQGGRKARIV
GKIVSPGVKGLATGFFEELGSKLAQLFTG*

BS15972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-PA 129 CG31509-PA 1..129 1..129 651 100 Plus
TotC-PA 129 CG31508-PA 1..129 1..129 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 1..128 348 52.3 Plus