Clone BS15973 Report

Search the DGRC for BS15973

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptDptB-RA
Protein status:BS15973.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15973.3prime Sequence

393 bp (393 high quality bases) assembled on 2007-04-16

> BS15973.3prime
ATGGTCTAGAAAGCTTCTAAAACCTGAAGGTATACACTCCACCGGCTCCC
CACTGAGGCCGGCTGTTGCCATAGGGTCCACCAAGGTGCTGGGCATACGA
TCCCGTGGCATCGAAGGAGTGGCGTCCATTGGGGCTCTGCCAAACGGGAG
CACGTCCGTTGAGGCTCAGATCGAATCCTTGCTTTGGGCTTCCACCGCCA
CCGCCATTCAATTGGAACTGGCGACGCACTCTGTGCAGGGGCACATCAAA
ATTGGGAGCATATGCCAGTGGTTCAGGCTGCAGATTCACAATCTCTCGGG
GATCAGGATAGGGATAAGCCCAGGCACTCGAGAAGGCACAAGCCAGTCCA
ATGAATAGAAGACTAGCGGTGAAATGCATGTCGACTGATAACT

BS15973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10794-PA 363 DptB-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
DptB-RA 449 CG10794-RA 32..394 379..17 1815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18867595..18867840 262..17 1230 100 Minus
2R 25286936 2R 18867422..18867538 379..263 585 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:58:24 has no hits.

BS15973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for BS15973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10794-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:48 Download gff for BS15973.3prime
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 21..402 9..389 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:46 Download gff for BS15973.3prime
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 21..402 9..389 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:46 Download gff for BS15973.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18867411..18867538 263..389 96 -> Minus
2R 18867595..18867848 9..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:48 Download gff for BS15973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14754916..14755043 263..389 96 -> Minus
arm_2R 14755100..14755353 9..262 98   Minus

BS15973.5prime Sequence

393 bp (393 high quality bases) assembled on 2007-04-16

> BS15973.5prime
GAAGTTATCAGTCGACATGCATTTCACCGCTAGTCTTCTATTCATTGGAC
TGGCTTGTGCCTTCTCGAGTGCCTGGGCTTATCCCTATCCTGATCCCCGA
GAGATTGTGAATCTGCAGCCTGAACCACTGGCATATGCTCCCAATTTTGA
TGTGCCCCTGCACAGAGTGCGTCGCCAGTTCCAATTGAATGGCGGTGGCG
GTGGAAGCCCAAAGCAAGGATTCGATCTGAGCCTCAACGGACGTGCTCCC
GTTTGGCAGAGCCCCAATGGACGCCACTCCTTCGATGCCACGGGATCGTA
TGCCCAGCACCTTGGTGGACCCTATGGCAACAGCCGGCCTCAGTGGGGAG
CCGGTGGAGTGTATACCTTCAGGTTTTAGAAGCTTTCTAGACC

BS15973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10794-PA 363 DptB-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
DptB-RA 449 CG10794-RA 32..394 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18867595..18867840 134..379 1230 100 Plus
2R 25286936 2R 18867422..18867538 17..133 585 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:08:19 has no hits.

BS15973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for BS15973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10794-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:06 Download gff for BS15973.5prime
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 21..402 7..387 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:51 Download gff for BS15973.5prime
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 21..402 7..387 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:51 Download gff for BS15973.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18867411..18867538 7..133 96 -> Plus
2R 18867595..18867848 134..387 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:06 Download gff for BS15973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14754916..14755043 7..133 96 -> Plus
arm_2R 14755100..14755353 134..387 98   Plus

BS15973.complete Sequence

395 bp assembled on 2007-05-07

GenBank Submission: FJ638003

> BS15973.complete
GAAGTTATCAGTCGACATGCATTTCACCGCTAGTCTTCTATTCATTGGAC
TGGCTTGTGCCTTCTCGAGTGCCTGGGCTTATCCCTATCCTGATCCCCGA
GAGATTGTGAATCTGCAGCCTGAACCACTGGCATATGCTCCCAATTTTGA
TGTGCCCCTGCACAGAGTGCGTCGCCAGTTCCAATTGAATGGCGGTGGCG
GTGGAAGCCCAAAGCAAGGATTCGATCTGAGCCTCAACGGACGTGCTCCC
GTTTGGCAGAGCCCCAATGGACGCCACTCCTTCGATGCCACGGGATCGTA
TGCCCAGCACCTTGGTGGACCCTATGGCAACAGCCGGCCTCAGTGGGGAG
CCGGTGGAGTGTATACCTTCAGGTTTTAGAAGCTTTCTAGACCAT

BS15973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
DptB-RA 363 CG10794-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
DptB-RA 449 CG10794-RA 32..394 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18867595..18867840 134..379 1230 100 Plus
2R 25286936 2R 18867422..18867538 17..133 585 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:26 has no hits.

BS15973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:13 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:39 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 22..403 7..387 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:27 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 32..394 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:13 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 22..403 7..387 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:59 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
DptB-RA 32..394 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:59 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18867422..18867538 17..133 100 -> Plus
2R 18867595..18867840 134..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:27 Download gff for BS15973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14754927..14755043 17..133 100 -> Plus
arm_2R 14755100..14755345 134..379 100   Plus

BS15973.pep Sequence

Translation from 16 to 378

> BS15973.pep
MHFTASLLFIGLACAFSSAWAYPYPDPREIVNLQPEPLAYAPNFDVPLHR
VRRQFQLNGGGGGSPKQGFDLSLNGRAPVWQSPNGRHSFDATGSYAQHLG
GPYGNSRPQWGAGGVYTFRF*

BS15973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
DptB-PA 120 CG10794-PA 1..120 1..120 668 100 Plus
Dpt-PA 106 CG12763-PA 1..103 1..120 240 41.7 Plus