Clone Sequence Records
BS15973.3prime Sequence
393 bp (393 high quality bases) assembled on 2007-04-16
> BS15973.3prime
ATGGTCTAGAAAGCTTCTAAAACCTGAAGGTATACACTCCACCGGCTCCC
CACTGAGGCCGGCTGTTGCCATAGGGTCCACCAAGGTGCTGGGCATACGA
TCCCGTGGCATCGAAGGAGTGGCGTCCATTGGGGCTCTGCCAAACGGGAG
CACGTCCGTTGAGGCTCAGATCGAATCCTTGCTTTGGGCTTCCACCGCCA
CCGCCATTCAATTGGAACTGGCGACGCACTCTGTGCAGGGGCACATCAAA
ATTGGGAGCATATGCCAGTGGTTCAGGCTGCAGATTCACAATCTCTCGGG
GATCAGGATAGGGATAAGCCCAGGCACTCGAGAAGGCACAAGCCAGTCCA
ATGAATAGAAGACTAGCGGTGAAATGCATGTCGACTGATAACT
BS15973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10794-PA | 363 | DptB-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DptB-RA | 449 | CG10794-RA | 32..394 | 379..17 | 1815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18867595..18867840 | 262..17 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 18867422..18867538 | 379..263 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:24 has no hits.
BS15973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for
BS15973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10794-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:48 Download gff for
BS15973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 21..402 | 9..389 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:46 Download gff for
BS15973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 21..402 | 9..389 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:46 Download gff for
BS15973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18867411..18867538 | 263..389 | 96 | -> | Minus |
2R | 18867595..18867848 | 9..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:48 Download gff for
BS15973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14754916..14755043 | 263..389 | 96 | -> | Minus |
arm_2R | 14755100..14755353 | 9..262 | 98 | | Minus |
BS15973.5prime Sequence
393 bp (393 high quality bases) assembled on 2007-04-16
> BS15973.5prime
GAAGTTATCAGTCGACATGCATTTCACCGCTAGTCTTCTATTCATTGGAC
TGGCTTGTGCCTTCTCGAGTGCCTGGGCTTATCCCTATCCTGATCCCCGA
GAGATTGTGAATCTGCAGCCTGAACCACTGGCATATGCTCCCAATTTTGA
TGTGCCCCTGCACAGAGTGCGTCGCCAGTTCCAATTGAATGGCGGTGGCG
GTGGAAGCCCAAAGCAAGGATTCGATCTGAGCCTCAACGGACGTGCTCCC
GTTTGGCAGAGCCCCAATGGACGCCACTCCTTCGATGCCACGGGATCGTA
TGCCCAGCACCTTGGTGGACCCTATGGCAACAGCCGGCCTCAGTGGGGAG
CCGGTGGAGTGTATACCTTCAGGTTTTAGAAGCTTTCTAGACC
BS15973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10794-PA | 363 | DptB-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DptB-RA | 449 | CG10794-RA | 32..394 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18867595..18867840 | 134..379 | 1230 | 100 | Plus |
2R | 25286936 | 2R | 18867422..18867538 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:08:19 has no hits.
BS15973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for
BS15973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10794-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:06 Download gff for
BS15973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 21..402 | 7..387 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:51 Download gff for
BS15973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 21..402 | 7..387 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:51 Download gff for
BS15973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18867411..18867538 | 7..133 | 96 | -> | Plus |
2R | 18867595..18867848 | 134..387 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:06 Download gff for
BS15973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14754916..14755043 | 7..133 | 96 | -> | Plus |
arm_2R | 14755100..14755353 | 134..387 | 98 | | Plus |
BS15973.complete Sequence
395 bp assembled on 2007-05-07
GenBank Submission: FJ638003
> BS15973.complete
GAAGTTATCAGTCGACATGCATTTCACCGCTAGTCTTCTATTCATTGGAC
TGGCTTGTGCCTTCTCGAGTGCCTGGGCTTATCCCTATCCTGATCCCCGA
GAGATTGTGAATCTGCAGCCTGAACCACTGGCATATGCTCCCAATTTTGA
TGTGCCCCTGCACAGAGTGCGTCGCCAGTTCCAATTGAATGGCGGTGGCG
GTGGAAGCCCAAAGCAAGGATTCGATCTGAGCCTCAACGGACGTGCTCCC
GTTTGGCAGAGCCCCAATGGACGCCACTCCTTCGATGCCACGGGATCGTA
TGCCCAGCACCTTGGTGGACCCTATGGCAACAGCCGGCCTCAGTGGGGAG
CCGGTGGAGTGTATACCTTCAGGTTTTAGAAGCTTTCTAGACCAT
BS15973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DptB-RA | 363 | CG10794-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DptB-RA | 449 | CG10794-RA | 32..394 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18867595..18867840 | 134..379 | 1230 | 100 | Plus |
2R | 25286936 | 2R | 18867422..18867538 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:26 has no hits.
BS15973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:13 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:39 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 22..403 | 7..387 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:27 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 32..394 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:13 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 22..403 | 7..387 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:59 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DptB-RA | 32..394 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:59 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18867422..18867538 | 17..133 | 100 | -> | Plus |
2R | 18867595..18867840 | 134..379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:27 Download gff for
BS15973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14754927..14755043 | 17..133 | 100 | -> | Plus |
arm_2R | 14755100..14755345 | 134..379 | 100 | | Plus |
BS15973.pep Sequence
Translation from 16 to 378
> BS15973.pep
MHFTASLLFIGLACAFSSAWAYPYPDPREIVNLQPEPLAYAPNFDVPLHR
VRRQFQLNGGGGGSPKQGFDLSLNGRAPVWQSPNGRHSFDATGSYAQHLG
GPYGNSRPQWGAGGVYTFRF*
BS15973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DptB-PA | 120 | CG10794-PA | 1..120 | 1..120 | 668 | 100 | Plus |
Dpt-PA | 106 | CG12763-PA | 1..103 | 1..120 | 240 | 41.7 | Plus |