Clone Sequence Records
BS15974.3prime Sequence
854 bp (798 high quality bases) assembled on 2007-04-16
> BS15974.3prime
ATGGTCTAGAAAGCTTCTACAACTTGGCGCGCTTCGGCACGCCGATGGCC
TCCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTC
CTCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACT
TGAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGG
TTGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGC
CGGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGT
GGATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTG
CGCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCAC
GCCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACA
CGAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGC
AGCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCAC
AATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGG
CCACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATG
TGCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTT
CTTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTG
GGTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGGGATCCACCTCAACT
TGGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGTAATATCCTGCGA
GGAT
BS15974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PB | 1170 | l(2)k09913-RB | 333..1170 | 854..17 | 4190 | 100 | Minus |
CG3082-PA | 1170 | l(2)k09913-RA | 333..1170 | 854..17 | 4190 | 100 | Minus |
CG3082-PC | 1170 | l(2)k09913-RC | 333..1170 | 854..17 | 4190 | 100 | Minus |
CG3082-PD | 951 | l(2)k09913-RD | 114..951 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RI | 1259 | CG3082-RI | 102..939 | 854..17 | 4190 | 100 | Minus |
l(2)k09913-RH | 1259 | CG3082-RH | 102..939 | 854..17 | 4190 | 100 | Minus |
l(2)k09913-RG | 1305 | CG3082-RG | 148..985 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071555 | 611..17 | 2975 | 100 | Minus |
2R | 25286936 | 2R | 23070642..23070900 | 854..596 | 1250 | 98.8 | Minus |
Blast to na_te.dros performed 2015-02-10 15:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 376..282 | 113 | 60.2 | Minus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 788..731 | 110 | 65.5 | Minus |
BS15974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for
BS15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PD | 114..951 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:09 Download gff for
BS15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 148..994 | 7..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:49 Download gff for
BS15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 148..994 | 7..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:49 Download gff for
BS15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23070642..23070888 | 608..854 | 100 | -> | Minus |
2R | 23070965..23071564 | 7..607 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:09 Download gff for
BS15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18958165..18958411 | 608..854 | 100 | -> | Minus |
arm_2R | 18958488..18959087 | 7..607 | 99 | | Minus |
BS15974.5prime Sequence
856 bp (819 high quality bases) assembled on 2007-04-16
> BS15974.5prime
GAAGTTATCAGTCGACATGGACTTCCTAATTGAAATAACATTACTGGTCA
TATTGGCAATTATACTGCTGAAGATCTATCATCGGGCGAAACGTAGTGCC
ATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAGGATATTACCAA
GAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGAGGTGGATCCCA
AGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGGTTCTCATGATG
GCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTATGCCCAGATCTA
CACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTACGCCGTGGCAGC
TACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCGAGACTATTCGA
TTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTC
CGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGATGTCGCGCGACA
TGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGTGCCAGGTGTGGGAC
AGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTGCCCAAGTCGATCTT
CCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAACTATACGCTGTACC
ACCTGAAGACATTCCACAACCAGGCCACCATCCACTACATGCGCTCCAGC
CAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCGCTGTTCTTCGTGTC
CGACAACGATCCCATCGGTCCGCCGTCCTCCAACCAGTCCGTTCGCGAGG
ACTGGGAGCGTGCGAACATCAAGGTTACCTTTCAGTGCTGGGAGCGGTCC
CAGCAC
BS15974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PD | 951 | l(2)k09913-RD | 1..840 | 17..856 | 4150 | 99.7 | Plus |
CG3082-PB | 1170 | l(2)k09913-RB | 297..1059 | 94..856 | 3765 | 99.7 | Plus |
CG3082-PA | 1170 | l(2)k09913-RA | 297..1059 | 94..856 | 3765 | 99.7 | Plus |
CG3082-PC | 1170 | l(2)k09913-RC | 297..1059 | 94..856 | 3765 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RD | 1451 | CG3082-RD | 176..1020 | 12..856 | 4180 | 99.6 | Plus |
l(2)k09913-RH | 1259 | CG3082-RH | 62..828 | 89..856 | 3785 | 99.6 | Plus |
l(2)k09913-RF | 1694 | CG3082-RF | 501..1263 | 94..856 | 3785 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071444 | 373..856 | 2390 | 99.6 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 95..388 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23069580..23069662 | 12..94 | 400 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-10 15:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 608..702 | 113 | 60.2 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 196..253 | 110 | 65.5 | Plus |
BS15974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:55 Download gff for
BS15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PD | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:17 Download gff for
BS15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1020 | 5..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:18 Download gff for
BS15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1020 | 5..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:18 Download gff for
BS15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23069574..23069662 | 5..94 | 96 | -> | Plus |
2R | 23070607..23070888 | 95..376 | 100 | -> | Plus |
2R | 23070965..23071444 | 377..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:17 Download gff for
BS15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18957097..18957185 | 5..94 | 96 | -> | Plus |
arm_2R | 18958130..18958411 | 95..376 | 100 | -> | Plus |
arm_2R | 18958488..18958967 | 377..856 | 99 | | Plus |
BS15974.complete Sequence
983 bp assembled on 2007-05-07
GenBank Submission: FJ638004
> BS15974.complete
GAAGTTATCAGTCGACATGGACTTCCTAATTGAAATAACATTACTGGTCA
TATTGGCAATTATACTGCTGAAGATCTATCATCGGGCGAAACGTAGTGCC
ATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAGGATATTACCAA
GAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGAGGTGGATCCCA
AGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGGTTCTCATGATG
GCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTATGCCCAGATCTA
CACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTACGCCGTGGCAGC
TACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCGAGACTATTCGA
TTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTC
CGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGATGTCGCGCGACA
TGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGTGCCAGGTGTGGGAC
AGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTGCCCAAGTCGATCTT
CCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAACTATACGCTGTACC
ACCTGAAGACATTCCACAACCAGGCCACCATCCACTACATGCGCTCCAGC
CAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCGCTGTTCTTCGTGTC
CGACAACGATCCCATCGGTCCGCCGTCCTCCAACCAGTCCGTTCGCGAGG
ACTGGGAGCGTGCGAACATCAAGGTTACCTTCAAGTGCTGGGAGCGGTCC
CAGCACGCCGCCCACTATATACGGCATCGCGAGGAGTACCTGCAGACGCT
GTTCCAGCATCTGGAGACCTGCGGTGTCTTGGAGGCCATCGGCGTGCCGA
AGCGCGCCAAGTTGTAGAAGCTTTCTAGACCAT
BS15974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RD | 951 | CG3082-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
l(2)k09913-RF | 1167 | CG3082-PF | 294..1167 | 94..967 | 4370 | 100 | Plus |
l(2)k09913-RE | 1170 | CG3082-PE | 297..1170 | 94..967 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RD | 1451 | CG3082-RD | 176..1131 | 12..967 | 4765 | 99.9 | Plus |
l(2)k09913-RF | 1694 | CG3082-RF | 501..1374 | 94..967 | 4370 | 100 | Plus |
l(2)k09913-RE | 1590 | CG3082-RE | 397..1270 | 94..967 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071555 | 373..967 | 2975 | 100 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 95..388 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23069580..23069662 | 12..94 | 400 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-27 20:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 608..702 | 113 | 60.2 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 196..253 | 110 | 65.5 | Plus |
BS15974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:12 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:10 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1140 | 5..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:16 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 181..1131 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:12 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 170..1140 | 5..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:24 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RD | 181..1131 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:24 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23069585..23069662 | 17..94 | 100 | -> | Plus |
2R | 23070607..23070888 | 95..376 | 100 | -> | Plus |
2R | 23070965..23071555 | 377..967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:16 Download gff for
BS15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18957108..18957185 | 17..94 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 95..376 | 100 | -> | Plus |
arm_2R | 18958488..18959078 | 377..967 | 100 | | Plus |
BS15974.pep Sequence
Translation from 16 to 966
> BS15974.pep
MDFLIEITLLVILAIILLKIYHRAKRSAMAPSNNRRYLSSQDITKNMTLY
TSTKTQVEVDPKTLAFKKPTGNPLVLMMAWLMAKQKHLKKYAQIYTEMGF
DVVVVHITPWQLLWPVKGSQVVAAETIRFLENNKSYEPIVMHGFSVGAYQ
LGEIMLQMSRDMDRYGSILDRFVCQVWDSAADITEIPVGVPKSIFPRNER
MQSALRNYTLYHLKTFHNQATIHYMRSSQMFHSTLLKAPALFFVSDNDPI
GPPSSNQSVREDWERANIKVTFKCWERSQHAAHYIRHREEYLQTLFQHLE
TCGVLEAIGVPKRAKL*
BS15974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-PD | 316 | CG3082-PD | 1..316 | 1..316 | 1652 | 100 | Plus |
l(2)k09913-PF | 388 | CG3082-PF | 96..388 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PE | 389 | CG3082-PE | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PC | 389 | CG3082-PC | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PA | 389 | CG3082-PA | 97..389 | 24..316 | 1533 | 99.3 | Plus |