Clone BS15974 Report

Search the DGRC for BS15974

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k09913-RD
Protein status:BS15974.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15974.3prime Sequence

854 bp (798 high quality bases) assembled on 2007-04-16

> BS15974.3prime
ATGGTCTAGAAAGCTTCTACAACTTGGCGCGCTTCGGCACGCCGATGGCC
TCCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTC
CTCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACT
TGAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGG
TTGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGC
CGGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGT
GGATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTG
CGCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCAC
GCCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACA
CGAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGC
AGCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCAC
AATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGG
CCACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATG
TGCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTT
CTTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTG
GGTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGGGATCCACCTCAACT
TGGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGTAATATCCTGCGA
GGAT

BS15974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PB 1170 l(2)k09913-RB 333..1170 854..17 4190 100 Minus
CG3082-PA 1170 l(2)k09913-RA 333..1170 854..17 4190 100 Minus
CG3082-PC 1170 l(2)k09913-RC 333..1170 854..17 4190 100 Minus
CG3082-PD 951 l(2)k09913-RD 114..951 854..17 4190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RI 1259 CG3082-RI 102..939 854..17 4190 100 Minus
l(2)k09913-RH 1259 CG3082-RH 102..939 854..17 4190 100 Minus
l(2)k09913-RG 1305 CG3082-RG 148..985 854..17 4190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071555 611..17 2975 100 Minus
2R 25286936 2R 23070642..23070900 854..596 1250 98.8 Minus
Blast to na_te.dros performed 2015-02-10 15:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 376..282 113 60.2 Minus
G5 4856 G5 G5_DM 4856bp 2673..2730 788..731 110 65.5 Minus

BS15974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:54 Download gff for BS15974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PD 114..951 17..854 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:09 Download gff for BS15974.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 148..994 7..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:49 Download gff for BS15974.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 148..994 7..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:49 Download gff for BS15974.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23070642..23070888 608..854 100 -> Minus
2R 23070965..23071564 7..607 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:09 Download gff for BS15974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18958165..18958411 608..854 100 -> Minus
arm_2R 18958488..18959087 7..607 99   Minus

BS15974.5prime Sequence

856 bp (819 high quality bases) assembled on 2007-04-16

> BS15974.5prime
GAAGTTATCAGTCGACATGGACTTCCTAATTGAAATAACATTACTGGTCA
TATTGGCAATTATACTGCTGAAGATCTATCATCGGGCGAAACGTAGTGCC
ATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAGGATATTACCAA
GAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGAGGTGGATCCCA
AGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGGTTCTCATGATG
GCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTATGCCCAGATCTA
CACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTACGCCGTGGCAGC
TACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCGAGACTATTCGA
TTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTC
CGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGATGTCGCGCGACA
TGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGTGCCAGGTGTGGGAC
AGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTGCCCAAGTCGATCTT
CCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAACTATACGCTGTACC
ACCTGAAGACATTCCACAACCAGGCCACCATCCACTACATGCGCTCCAGC
CAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCGCTGTTCTTCGTGTC
CGACAACGATCCCATCGGTCCGCCGTCCTCCAACCAGTCCGTTCGCGAGG
ACTGGGAGCGTGCGAACATCAAGGTTACCTTTCAGTGCTGGGAGCGGTCC
CAGCAC

BS15974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PD 951 l(2)k09913-RD 1..840 17..856 4150 99.7 Plus
CG3082-PB 1170 l(2)k09913-RB 297..1059 94..856 3765 99.7 Plus
CG3082-PA 1170 l(2)k09913-RA 297..1059 94..856 3765 99.7 Plus
CG3082-PC 1170 l(2)k09913-RC 297..1059 94..856 3765 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RD 1451 CG3082-RD 176..1020 12..856 4180 99.6 Plus
l(2)k09913-RH 1259 CG3082-RH 62..828 89..856 3785 99.6 Plus
l(2)k09913-RF 1694 CG3082-RF 501..1263 94..856 3785 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071444 373..856 2390 99.6 Plus
2R 25286936 2R 23070607..23070900 95..388 1425 99 Plus
2R 25286936 2R 23069580..23069662 12..94 400 98.8 Plus
Blast to na_te.dros performed 2015-02-10 15:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 608..702 113 60.2 Plus
G5 4856 G5 G5_DM 4856bp 2673..2730 196..253 110 65.5 Plus

BS15974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:55 Download gff for BS15974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PD 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:17 Download gff for BS15974.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1020 5..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:18 Download gff for BS15974.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1020 5..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:18 Download gff for BS15974.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23069574..23069662 5..94 96 -> Plus
2R 23070607..23070888 95..376 100 -> Plus
2R 23070965..23071444 377..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:17 Download gff for BS15974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18957097..18957185 5..94 96 -> Plus
arm_2R 18958130..18958411 95..376 100 -> Plus
arm_2R 18958488..18958967 377..856 99   Plus

BS15974.complete Sequence

983 bp assembled on 2007-05-07

GenBank Submission: FJ638004

> BS15974.complete
GAAGTTATCAGTCGACATGGACTTCCTAATTGAAATAACATTACTGGTCA
TATTGGCAATTATACTGCTGAAGATCTATCATCGGGCGAAACGTAGTGCC
ATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAGGATATTACCAA
GAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGAGGTGGATCCCA
AGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGGTTCTCATGATG
GCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTATGCCCAGATCTA
CACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTACGCCGTGGCAGC
TACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCGAGACTATTCGA
TTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTC
CGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGATGTCGCGCGACA
TGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGTGCCAGGTGTGGGAC
AGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTGCCCAAGTCGATCTT
CCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAACTATACGCTGTACC
ACCTGAAGACATTCCACAACCAGGCCACCATCCACTACATGCGCTCCAGC
CAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCGCTGTTCTTCGTGTC
CGACAACGATCCCATCGGTCCGCCGTCCTCCAACCAGTCCGTTCGCGAGG
ACTGGGAGCGTGCGAACATCAAGGTTACCTTCAAGTGCTGGGAGCGGTCC
CAGCACGCCGCCCACTATATACGGCATCGCGAGGAGTACCTGCAGACGCT
GTTCCAGCATCTGGAGACCTGCGGTGTCTTGGAGGCCATCGGCGTGCCGA
AGCGCGCCAAGTTGTAGAAGCTTTCTAGACCAT

BS15974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RD 951 CG3082-PD 1..951 17..967 4755 100 Plus
l(2)k09913-RF 1167 CG3082-PF 294..1167 94..967 4370 100 Plus
l(2)k09913-RE 1170 CG3082-PE 297..1170 94..967 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RD 1451 CG3082-RD 176..1131 12..967 4765 99.9 Plus
l(2)k09913-RF 1694 CG3082-RF 501..1374 94..967 4370 100 Plus
l(2)k09913-RE 1590 CG3082-RE 397..1270 94..967 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071555 373..967 2975 100 Plus
2R 25286936 2R 23070607..23070900 95..388 1425 99 Plus
2R 25286936 2R 23069580..23069662 12..94 400 98.8 Plus
Blast to na_te.dros performed 2014-11-27 20:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 608..702 113 60.2 Plus
G5 4856 G5 G5_DM 4856bp 2673..2730 196..253 110 65.5 Plus

BS15974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:12 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:10 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1140 5..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:16 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 181..1131 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:12 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 170..1140 5..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:24 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RD 181..1131 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:24 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23069585..23069662 17..94 100 -> Plus
2R 23070607..23070888 95..376 100 -> Plus
2R 23070965..23071555 377..967 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:16 Download gff for BS15974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18957108..18957185 17..94 100 -> Plus
arm_2R 18958130..18958411 95..376 100 -> Plus
arm_2R 18958488..18959078 377..967 100   Plus

BS15974.pep Sequence

Translation from 16 to 966

> BS15974.pep
MDFLIEITLLVILAIILLKIYHRAKRSAMAPSNNRRYLSSQDITKNMTLY
TSTKTQVEVDPKTLAFKKPTGNPLVLMMAWLMAKQKHLKKYAQIYTEMGF
DVVVVHITPWQLLWPVKGSQVVAAETIRFLENNKSYEPIVMHGFSVGAYQ
LGEIMLQMSRDMDRYGSILDRFVCQVWDSAADITEIPVGVPKSIFPRNER
MQSALRNYTLYHLKTFHNQATIHYMRSSQMFHSTLLKAPALFFVSDNDPI
GPPSSNQSVREDWERANIKVTFKCWERSQHAAHYIRHREEYLQTLFQHLE
TCGVLEAIGVPKRAKL*

BS15974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-PD 316 CG3082-PD 1..316 1..316 1652 100 Plus
l(2)k09913-PF 388 CG3082-PF 96..388 24..316 1533 99.3 Plus
l(2)k09913-PE 389 CG3082-PE 97..389 24..316 1533 99.3 Plus
l(2)k09913-PC 389 CG3082-PC 97..389 24..316 1533 99.3 Plus
l(2)k09913-PA 389 CG3082-PA 97..389 24..316 1533 99.3 Plus