Clone Sequence Records
BS15975.3prime Sequence
915 bp (829 high quality bases) assembled on 2007-04-16
> BS15975.3prime
ATGGTCTAGAAAGCTTTCAAAGAACCAACGATTTCGGAAACAATTGCTGC
TTCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGG
ATGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGA
GGTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTG
TTGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTT
GTCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCG
ACATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAA
AGATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTA
GATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGC
ACACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGC
AGCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCG
CGGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGA
CGACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTG
AGCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTT
TAACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGT
ATCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGC
TTCANGATACCCTCCTTGTATACGGCATCATCCTGGTTGGCACGCGTCTC
GGCCGCACAATTGATGACAATGTCCCAGGCCCGTCCAGTGGTGGGGTGTG
GCGCAAAAGCCGCCT
BS15975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 218..1116 | 915..17 | 4476 | 99.8 | Minus |
CG5854-PB | 990 | CG5854-RB | 92..990 | 915..17 | 4476 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 333..1231 | 915..17 | 4484 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934573..23934932 | 915..556 | 1789 | 99.7 | Minus |
3R | 32079331 | 3R | 23935364..23935633 | 286..17 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 23935029..23935297 | 555..287 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:36 has no hits.
BS15975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for
BS15975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PB | 92..990 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:59 Download gff for
BS15975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 333..1231 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:52 Download gff for
BS15975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 333..1231 | 17..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:52 Download gff for
BS15975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935364..23935633 | 17..286 | 100 | | Minus |
3R | 23934573..23934932 | 556..915 | 99 | -> | Minus |
3R | 23935029..23935297 | 287..555 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:59 Download gff for
BS15975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19760295..19760654 | 556..915 | 99 | -> | Minus |
arm_3R | 19760751..19761019 | 287..555 | 100 | -> | Minus |
arm_3R | 19761086..19761355 | 17..286 | 100 | | Minus |
BS15975.5prime Sequence
862 bp (831 high quality bases) assembled on 2007-04-16
> BS15975.5prime
GAAGTTATCAGTCGACATGGCATGGCTAAACGAGGAGCAGACGCGGGTCT
TCGAGAGCGATCGGGTGGAGTTCTGCAGCGCGAACCTAATAAACGCCGCC
TCATGCAAGGCGGCTTTTGCGCCACACCCCACCACTGGACGGGCCTGGGA
CATTGTCATCAATTGTGCGGCCGAGACGCGTGCCAACCAGGATGATGCCG
TATACAAGGAGGGTATCCTGAAGCTCAGTTTGAACTGCGCCAATGAGGCG
GCTAACCAGCGGGTCAAACGATACGTGGAACTCAGCTCTGGTTGTGTGAA
CAGCAGCGAAAAGACGCCGTTAAAAGAGGACTGCAAGACGGATCCCTGGA
CGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAGAAGGAACTGGCCAACATC
GACGATCTCAGTTACACGGTCGTCCGTTTGCCCGTGGTCTATGGCATTGG
CGATAAGCGCTATTTGATGCCGCGCATTATAATCGCTGCCATATACAAAT
ACCTGAACGAGACAATGAAGCTGCTGTGGAACGATGCCATGCGTTTGAAT
ACTGTGCACGTATCGGACGTGTGCGCTGCCGTTTGGCAATTGGCTCAGAG
TCCCAAGACCGCCGGTCAGATCTACAACATCTGCGATGATTCAGCATCGA
CGCAGGGCACCATTAGTAATCTTTTAGTGGATATTTTCGACATCAATTTG
GATTTCTTCGGCCTTGTAATGTCGAATTTGGCAAAACTTTATCCCACGGA
CACCGTCAGTGAAATCAACGACAAGCACATGGCACCCTGGGCCGAGATTT
GCCAGCGCAATGGCATCGACAACACCCCGCTGACACCGTACCTAGATGAG
GAGCAGCTCCAG
BS15975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 127..972 | 17..862 | 4230 | 100 | Plus |
CG5854-PB | 990 | CG5854-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 242..1087 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 98..467 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935297 | 468..736 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 23935364..23935489 | 737..862 | 630 | 100 | Plus |
3R | 32079331 | 3R | 23934263..23934344 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:31 has no hits.
BS15975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for
BS15975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PB | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:50 Download gff for
BS15975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 235..1087 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:47 Download gff for
BS15975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 235..1087 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:47 Download gff for
BS15975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935029..23935297 | 468..736 | 100 | -> | Plus |
3R | 23935364..23935489 | 737..862 | 100 | | Plus |
3R | 23934256..23934344 | 8..98 | 95 | -> | Plus |
3R | 23934564..23934932 | 99..467 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:50 Download gff for
BS15975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759978..19760066 | 8..98 | 95 | -> | Plus |
arm_3R | 19760286..19760654 | 99..467 | 100 | -> | Plus |
arm_3R | 19760751..19761019 | 468..736 | 100 | -> | Plus |
arm_3R | 19761086..19761211 | 737..862 | 100 | | Plus |
BS15975.complete Sequence
1022 bp assembled on 2007-05-07
GenBank Submission: FJ638005
> BS15975.complete
GAAGTTATCAGTCGACATGGCATGGCTAAACGAGGAGCAGACGCGGGTCT
TCGAGAGCGATCGGGTGGAGTTCTGCAGCGCGAACCTAATAAACGCCGCC
TCATGCAAGGCGGCTTTTGCGCCACACCCCACCACTGGACGGGCCTGGGA
CATTGTCATCAATTGTGCGGCCGAGACGCGTGCCAACCAGGATGATGCCG
TATACAAGGAGGGTATCCTGAAGCTCAGTTTGAACTGCGCCAATGAGGCG
GCTAACCAGCGGGTCAAACGATACGTGGAACTCAGCTCTGGTTGTGTGAA
CAGCAGCGAAAAGACGCCGTTAAAAGAGGACTGCAAGACGGATCCCTGGA
CGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAGAAGGAACTGGCCAACATC
GACGATCTCAGTTACACGGTCGTCCGTTTGCCCGTGGTCTATGGCATTGG
CGATAAGCGCTATTTGATGCCGCGCATTATAATCGCTGCCATATACAAAT
ACCTGAACGAGACAATGAAGCTGCTGTGGAACGATGCCATGCGTTTGAAT
ACTGTGCACGTATCGGACGTGTGCGCTGCCGTTTGGCAATTGGCTCAGAG
TCCCAAGACCGCCGGTCAGATCTACAACATCTGCGATGATTCAGCATCGA
CGCAGGGCACCATTAGTAATCTTTTAGTGGATATTTTCGACATCAATTTG
GATTTCTTCGGCCTTGTAATGTCGAATTTGGCAAAACTTTATCCCACGGA
CACCGTCAGTGAAATCAACGACAAGCACATGGCACCCTGGGCCGAGATTT
GCCAGCGCAATGGCATCGACAACACCCCGCTGACACCGTACCTAGATGAG
GAGCAGCTCCAGCACAAGCACCTCTACTTGGATAACACGAAACTGAAAGA
CTTTGGCTACGTGCTGCAGCATCCGAAAGTCACTCGCGAGCTGCTCATGG
AGATGATTAACGACTATGTGAAGCAGCAATTGTTTCCGAAATCGTTGGTT
CTTTGAAAGCTTTCTAGACCAT
BS15975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1116 | CG5854-PA | 127..1116 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 242..1231 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 98..467 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935364..23935633 | 737..1006 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935297 | 468..736 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 23934263..23934344 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:59:04 has no hits.
BS15975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:05 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RB | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:49 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RB | 261..1257 | 8..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:35 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 242..1230 | 17..1005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:05 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RB | 261..1257 | 8..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:43 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 242..1230 | 17..1005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:43 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935364..23935632 | 737..1005 | 100 | | Plus |
3R | 23934263..23934344 | 17..98 | 100 | -> | Plus |
3R | 23934564..23934932 | 99..467 | 100 | -> | Plus |
3R | 23935029..23935297 | 468..736 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:35 Download gff for
BS15975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19760751..19761019 | 468..736 | 100 | -> | Plus |
arm_3R | 19761086..19761354 | 737..1005 | 100 | | Plus |
arm_3R | 19759985..19760066 | 17..98 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 99..467 | 100 | -> | Plus |
BS15975.pep Sequence
Translation from 16 to 1005
> BS15975.pep
MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINC
AAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKT
PLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYL
MPRIIIAAIYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAG
QIYNICDDSASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEI
NDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVL
QHPKVTRELLMEMINDYVKQQLFPKSLVL*
BS15975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 371 | CG5854-PA | 43..371 | 1..329 | 1728 | 100 | Plus |