Clone BS15975 Report

Search the DGRC for BS15975

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG5854-RB
Protein status:BS15975.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15975.3prime Sequence

915 bp (829 high quality bases) assembled on 2007-04-16

> BS15975.3prime
ATGGTCTAGAAAGCTTTCAAAGAACCAACGATTTCGGAAACAATTGCTGC
TTCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGG
ATGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGA
GGTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTG
TTGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTT
GTCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCG
ACATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAA
AGATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTA
GATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGC
ACACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGC
AGCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCG
CGGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGA
CGACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTG
AGCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTT
TAACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGT
ATCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGC
TTCANGATACCCTCCTTGTATACGGCATCATCCTGGTTGGCACGCGTCTC
GGCCGCACAATTGATGACAATGTCCCAGGCCCGTCCAGTGGTGGGGTGTG
GCGCAAAAGCCGCCT

BS15975.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 218..1116 915..17 4476 99.8 Minus
CG5854-PB 990 CG5854-RB 92..990 915..17 4476 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 333..1231 915..17 4484 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934573..23934932 915..556 1789 99.7 Minus
3R 32079331 3R 23935364..23935633 286..17 1350 100 Minus
3R 32079331 3R 23935029..23935297 555..287 1345 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:36 has no hits.

BS15975.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for BS15975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PB 92..990 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:59 Download gff for BS15975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 333..1231 17..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:52 Download gff for BS15975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 333..1231 17..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:52 Download gff for BS15975.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23935364..23935633 17..286 100   Minus
3R 23934573..23934932 556..915 99 -> Minus
3R 23935029..23935297 287..555 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:59 Download gff for BS15975.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19760295..19760654 556..915 99 -> Minus
arm_3R 19760751..19761019 287..555 100 -> Minus
arm_3R 19761086..19761355 17..286 100   Minus

BS15975.5prime Sequence

862 bp (831 high quality bases) assembled on 2007-04-16

> BS15975.5prime
GAAGTTATCAGTCGACATGGCATGGCTAAACGAGGAGCAGACGCGGGTCT
TCGAGAGCGATCGGGTGGAGTTCTGCAGCGCGAACCTAATAAACGCCGCC
TCATGCAAGGCGGCTTTTGCGCCACACCCCACCACTGGACGGGCCTGGGA
CATTGTCATCAATTGTGCGGCCGAGACGCGTGCCAACCAGGATGATGCCG
TATACAAGGAGGGTATCCTGAAGCTCAGTTTGAACTGCGCCAATGAGGCG
GCTAACCAGCGGGTCAAACGATACGTGGAACTCAGCTCTGGTTGTGTGAA
CAGCAGCGAAAAGACGCCGTTAAAAGAGGACTGCAAGACGGATCCCTGGA
CGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAGAAGGAACTGGCCAACATC
GACGATCTCAGTTACACGGTCGTCCGTTTGCCCGTGGTCTATGGCATTGG
CGATAAGCGCTATTTGATGCCGCGCATTATAATCGCTGCCATATACAAAT
ACCTGAACGAGACAATGAAGCTGCTGTGGAACGATGCCATGCGTTTGAAT
ACTGTGCACGTATCGGACGTGTGCGCTGCCGTTTGGCAATTGGCTCAGAG
TCCCAAGACCGCCGGTCAGATCTACAACATCTGCGATGATTCAGCATCGA
CGCAGGGCACCATTAGTAATCTTTTAGTGGATATTTTCGACATCAATTTG
GATTTCTTCGGCCTTGTAATGTCGAATTTGGCAAAACTTTATCCCACGGA
CACCGTCAGTGAAATCAACGACAAGCACATGGCACCCTGGGCCGAGATTT
GCCAGCGCAATGGCATCGACAACACCCCGCTGACACCGTACCTAGATGAG
GAGCAGCTCCAG

BS15975.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 127..972 17..862 4230 100 Plus
CG5854-PB 990 CG5854-RB 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 242..1087 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 98..467 1850 100 Plus
3R 32079331 3R 23935029..23935297 468..736 1345 100 Plus
3R 32079331 3R 23935364..23935489 737..862 630 100 Plus
3R 32079331 3R 23934263..23934344 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:31 has no hits.

BS15975.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for BS15975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PB 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:50 Download gff for BS15975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 235..1087 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:47 Download gff for BS15975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 235..1087 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:47 Download gff for BS15975.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23935029..23935297 468..736 100 -> Plus
3R 23935364..23935489 737..862 100   Plus
3R 23934256..23934344 8..98 95 -> Plus
3R 23934564..23934932 99..467 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:50 Download gff for BS15975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759978..19760066 8..98 95 -> Plus
arm_3R 19760286..19760654 99..467 100 -> Plus
arm_3R 19760751..19761019 468..736 100 -> Plus
arm_3R 19761086..19761211 737..862 100   Plus

BS15975.complete Sequence

1022 bp assembled on 2007-05-07

GenBank Submission: FJ638005

> BS15975.complete
GAAGTTATCAGTCGACATGGCATGGCTAAACGAGGAGCAGACGCGGGTCT
TCGAGAGCGATCGGGTGGAGTTCTGCAGCGCGAACCTAATAAACGCCGCC
TCATGCAAGGCGGCTTTTGCGCCACACCCCACCACTGGACGGGCCTGGGA
CATTGTCATCAATTGTGCGGCCGAGACGCGTGCCAACCAGGATGATGCCG
TATACAAGGAGGGTATCCTGAAGCTCAGTTTGAACTGCGCCAATGAGGCG
GCTAACCAGCGGGTCAAACGATACGTGGAACTCAGCTCTGGTTGTGTGAA
CAGCAGCGAAAAGACGCCGTTAAAAGAGGACTGCAAGACGGATCCCTGGA
CGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAGAAGGAACTGGCCAACATC
GACGATCTCAGTTACACGGTCGTCCGTTTGCCCGTGGTCTATGGCATTGG
CGATAAGCGCTATTTGATGCCGCGCATTATAATCGCTGCCATATACAAAT
ACCTGAACGAGACAATGAAGCTGCTGTGGAACGATGCCATGCGTTTGAAT
ACTGTGCACGTATCGGACGTGTGCGCTGCCGTTTGGCAATTGGCTCAGAG
TCCCAAGACCGCCGGTCAGATCTACAACATCTGCGATGATTCAGCATCGA
CGCAGGGCACCATTAGTAATCTTTTAGTGGATATTTTCGACATCAATTTG
GATTTCTTCGGCCTTGTAATGTCGAATTTGGCAAAACTTTATCCCACGGA
CACCGTCAGTGAAATCAACGACAAGCACATGGCACCCTGGGCCGAGATTT
GCCAGCGCAATGGCATCGACAACACCCCGCTGACACCGTACCTAGATGAG
GAGCAGCTCCAGCACAAGCACCTCTACTTGGATAACACGAAACTGAAAGA
CTTTGGCTACGTGCTGCAGCATCCGAAAGTCACTCGCGAGCTGCTCATGG
AGATGATTAACGACTATGTGAAGCAGCAATTGTTTCCGAAATCGTTGGTT
CTTTGAAAGCTTTCTAGACCAT

BS15975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1116 CG5854-PA 127..1116 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 242..1231 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 98..467 1850 100 Plus
3R 32079331 3R 23935364..23935633 737..1006 1350 100 Plus
3R 32079331 3R 23935029..23935297 468..736 1345 100 Plus
3R 32079331 3R 23934263..23934344 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:59:04 has no hits.

BS15975.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:05 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 1..990 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:49 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 261..1257 8..1006 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:35 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 242..1230 17..1005 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:05 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 261..1257 8..1006 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:43 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 242..1230 17..1005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:43 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935364..23935632 737..1005 100   Plus
3R 23934263..23934344 17..98 100 -> Plus
3R 23934564..23934932 99..467 100 -> Plus
3R 23935029..23935297 468..736 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:35 Download gff for BS15975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19760751..19761019 468..736 100 -> Plus
arm_3R 19761086..19761354 737..1005 100   Plus
arm_3R 19759985..19760066 17..98 100 -> Plus
arm_3R 19760286..19760654 99..467 100 -> Plus

BS15975.pep Sequence

Translation from 16 to 1005

> BS15975.pep
MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINC
AAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKT
PLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYL
MPRIIIAAIYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAG
QIYNICDDSASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEI
NDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVL
QHPKVTRELLMEMINDYVKQQLFPKSLVL*

BS15975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 371 CG5854-PA 43..371 1..329 1728 100 Plus