Clone BS15976 Report

Search the DGRC for BS15976

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptglob1-RA
Protein status:BS15976.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15976.3prime Sequence

492 bp (492 high quality bases) assembled on 2007-04-16

> BS15976.3prime
ATGGTCTAGAAAGCTTCTACTTGGCGTTGCCGTCGTCGTCGATCGCCTTG
AAGATGATTCCGTAGACATGGTCCACCAGCTTGGCCCACGTGGCCGCTTG
ACTCTCGTCCAGACTGCAGGCAGCTGTCAGCACATCCAGGATAACTCCTT
TCAGTTGGTTGTAAGACTCCTTGGAAACGGTCCGCGGAATGTGACTAACG
GCAATTTTGGTCCAGATCTCGTCCAGCTTCTCCAGATCGCCATCCTGGCC
CAGGACCTGGATGGACTCGTCAAAGACCCTTATGATTCTGCCGGCATGTG
CTCGGAAGCGAGCATTTCCACTTAGCTCCTCCAAAGGAACATCGCGGAAG
GGGAACTTCTCCAAGTTGGACGGAAAGCGGTTGAAAAACTGCGTCAGTAT
CGCCGCTCCAGAATCTGTTGGTGTTGCCACGGGGATTTCCCAGGTCTTCT
TGATCAGTTGCACCTCATCGCTGTTCATGTCGACTGATAACT

BS15976.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9734-PC 462 glob1-RC 1..462 478..17 2310 100 Minus
CG9734-PB 462 glob1-RB 1..462 478..17 2310 100 Minus
CG9734-PA 462 glob1-RA 1..462 478..17 2310 100 Minus
CG9734-PD 462 glob1-RD 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..565 480..16 2325 100 Minus
glob1-RD 1143 CG9734-RD 323..787 480..16 2325 100 Minus
glob1-RA 1274 CG9734-RA 454..918 480..16 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 158..319 810 100 Plus
3R 32079331 3R 15897774..15897935 319..480 810 100 Plus
3R 32079331 3R 15897282..15897423 16..157 710 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:06:20 has no hits.

BS15976.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for BS15976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9734-PD 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:13 Download gff for BS15976.3prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 230..699 16..486 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:34 Download gff for BS15976.3prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 449..918 16..486 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:34 Download gff for BS15976.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15897282..15897423 16..157 100 <- Plus
3R 15897548..15897709 158..319 100 <- Plus
3R 15897775..15897940 320..486 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:13 Download gff for BS15976.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723004..11723145 16..157 100 <- Plus
arm_3R 11723270..11723431 158..319 100 <- Plus
arm_3R 11723497..11723662 320..486 98   Plus

BS15976.5prime Sequence

492 bp (492 high quality bases) assembled on 2007-04-16

> BS15976.5prime
GAAGTTATCAGTCGACATGAACAGCGATGAGGTGCAACTGATCAAGAAGA
CCTGGGAAATCCCCGTGGCAACACCAACAGATTCTGGAGCGGCGATACTG
ACGCAGTTTTTCAACCGCTTTCCGTCCAACTTGGAGAAGTTCCCCTTCCG
CGATGTTCCTTTGGAGGAGCTAAGTGGAAATGCTCGCTTCCGAGCACATG
CCGGCAGAATCATAAGGGTCTTTGACGAGTCCATCCAGGTCCTGGGCCAG
GATGGCGATCTGGAGAAGCTGGACGAGATCTGGACCAAAATTGCCGTTAG
TCACATTCCGCGGACCGTTTCCAAGGAGTCTTACAACCAACTGAAAGGAG
TTATCCTGGATGTGCTGACAGCTGCCTGCAGTCTGGACGAGAGTCAAGCG
GCCACGTGGGCCAAGCTGGTGGACCATGTCTACGGAATCATCTTCAAGGC
GATCGACGACGACGGCAACGCCAAGTAGAAGCTTTCTAGACC

BS15976.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9734-PC 462 glob1-RC 1..462 17..478 2310 100 Plus
CG9734-PB 462 glob1-RB 1..462 17..478 2310 100 Plus
CG9734-PA 462 glob1-RA 1..462 17..478 2310 100 Plus
CG9734-PD 462 glob1-RD 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..565 15..479 2325 100 Plus
glob1-RD 1143 CG9734-RD 323..787 15..479 2325 100 Plus
glob1-RA 1274 CG9734-RA 454..918 15..479 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 337..176 810 100 Minus
3R 32079331 3R 15897774..15897935 176..15 810 100 Minus
3R 32079331 3R 15897282..15897423 479..338 710 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:01:08 has no hits.

BS15976.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:56 Download gff for BS15976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9734-PD 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:44 Download gff for BS15976.5prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 230..699 9..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:52 Download gff for BS15976.5prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 449..918 9..479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:52 Download gff for BS15976.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15897282..15897423 338..479 100 <- Minus
3R 15897548..15897709 176..337 100 <- Minus
3R 15897775..15897940 9..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:44 Download gff for BS15976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723004..11723145 338..479 100 <- Minus
arm_3R 11723270..11723431 176..337 100 <- Minus
arm_3R 11723497..11723662 9..175 98   Minus

BS15976.complete Sequence

494 bp assembled on 2007-05-07

GenBank Submission: FJ638006

> BS15976.complete
GAAGTTATCAGTCGACATGAACAGCGATGAGGTGCAACTGATCAAGAAGA
CCTGGGAAATCCCCGTGGCAACACCAACAGATTCTGGAGCGGCGATACTG
ACGCAGTTTTTCAACCGCTTTCCGTCCAACTTGGAGAAGTTCCCCTTCCG
CGATGTTCCTTTGGAGGAGCTAAGTGGAAATGCTCGCTTCCGAGCACATG
CCGGCAGAATCATAAGGGTCTTTGACGAGTCCATCCAGGTCCTGGGCCAG
GATGGCGATCTGGAGAAGCTGGACGAGATCTGGACCAAAATTGCCGTTAG
TCACATTCCGCGGACCGTTTCCAAGGAGTCTTACAACCAACTGAAAGGAG
TTATCCTGGATGTGCTGACAGCTGCCTGCAGTCTGGACGAGAGTCAAGCG
GCCACGTGGGCCAAGCTGGTGGACCATGTCTACGGAATCATCTTCAAGGC
GATCGACGACGACGGCAACGCCAAGTAGAAGCTTTCTAGACCAT

BS15976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 462 CG9734-PF 1..462 17..478 2310 100 Plus
glob1-RD 462 CG9734-PD 1..462 17..478 2310 100 Plus
glob1-RA 462 CG9734-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..565 15..479 2325 100 Plus
glob1-RD 1143 CG9734-RD 323..787 15..479 2325 100 Plus
glob1-RA 1274 CG9734-RA 454..918 15..479 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 337..176 810 100 Minus
3R 32079331 3R 15897774..15897935 176..15 810 100 Minus
3R 32079331 3R 15897282..15897423 479..338 710 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:53 has no hits.

BS15976.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:00 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:37 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RD 320..789 9..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:41 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 237..698 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:01 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RD 320..789 9..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:32 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 456..917 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:32 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15897283..15897423 338..478 100 <- Minus
3R 15897548..15897709 176..337 100 <- Minus
3R 15897775..15897933 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:41 Download gff for BS15976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723005..11723145 338..478 100 <- Minus
arm_3R 11723270..11723431 176..337 100 <- Minus
arm_3R 11723497..11723655 17..175 100   Minus

BS15976.pep Sequence

Translation from 16 to 477

> BS15976.pep
MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFPFRDVPLE
ELSGNARFRAHAGRIIRVFDESIQVLGQDGDLEKLDEIWTKIAVSHIPRT
VSKESYNQLKGVILDVLTAACSLDESQAATWAKLVDHVYGIIFKAIDDDG
NAK*

BS15976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-PF 153 CG9734-PF 1..153 1..153 786 100 Plus
glob1-PD 153 CG9734-PD 1..153 1..153 786 100 Plus
glob1-PA 153 CG9734-PA 1..153 1..153 786 100 Plus
glob1-PB 153 CG9734-PB 1..153 1..153 786 100 Plus
glob1-PC 153 CG9734-PC 1..153 1..153 786 100 Plus