Clone Sequence Records
BS15978.3prime Sequence
384 bp (384 high quality bases) assembled on 2007-04-16
> BS15978.3prime
ATGGTCTAGAAAGCTTTTAGACGGCCTTGTAGACGCGCACGCACTTAACG
TTGCCGATGGTGAGGGTGGTGATCAGCTCGTTGTCGGTGAACTCGCGGAC
GATGGTGGTGGGCTTGTCGCCCTTCTGCTCCTGCGTCAGCTTGTTGCCAT
CCAGGGTGATGATGCTCTTGACGTTGCGACCGTCCAGGGTCTCCTCGTCG
AACTCAACGCCCAGCTTGAAGCTGATGGCAGAGGTCTTGAAGGTGGAGGT
GGTAGTCAGGGTGTAGGTATCGCCCTCCAAGGTCACCTCCACTGTGGGGC
TCAGGCTGTTGCCCATCTTGCGCGTCACCAGACCGACGCCGAAAGATGAA
TGATGGGGCAGACTGCACATGTCGACTGATAACT
BS15978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6783-PA | 354 | CG6783-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
| CG6783-PB | 393 | CG6783-RB | 70..393 | 340..17 | 1620 | 100 | Minus |
| CG6783-PC | 474 | CG6783-RC | 70..342 | 340..68 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RA | 1051 | CG6783-RA | 435..788 | 370..17 | 1770 | 100 | Minus |
| fabp-RB | 723 | CG6783-RB | 137..460 | 340..17 | 1620 | 100 | Minus |
| fabp-RC | 1660 | CG6783-RC | 137..409 | 340..68 | 1365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 68..340 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 11564321..11564371 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:01:31 has no hits.
BS15978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:57 Download gff for
BS15978.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:47 Download gff for
BS15978.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 424..795 | 7..375 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:35 Download gff for
BS15978.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 429..800 | 7..375 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:35 Download gff for
BS15978.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564309..11564371 | 7..67 | 93 | <- | Plus |
| 3R | 11564440..11564711 | 68..339 | 100 | <- | Plus |
| 3R | 11564784..11564820 | 340..375 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:47 Download gff for
BS15978.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390031..7390093 | 7..67 | 93 | <- | Plus |
| arm_3R | 7390162..7390433 | 68..339 | 100 | <- | Plus |
| arm_3R | 7390506..7390542 | 340..375 | 91 | | Plus |
BS15978.5prime Sequence
384 bp (384 high quality bases) assembled on 2007-04-16
> BS15978.5prime
GAAGTTATCAGTCGACATGTGCAGTCTGCCCCATCATTCATCTTTCGGCG
TCGGTCTGGTGACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAG
GTGACCTTGGAGGGCGATACCTACACCCTGACTACCACCTCCACCTTCAA
GACCTCTGCCATCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCC
TGGACGGTCGCAACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTG
ACGCAGGAGCAGAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCAC
CGACAACGAGCTGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGC
GCGTCTACAAGGCCGTCTAAAAGCTTTCTAGACC
BS15978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6783-PA | 354 | CG6783-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
| CG6783-PB | 393 | CG6783-RB | 70..393 | 47..370 | 1620 | 100 | Plus |
| CG6783-PC | 474 | CG6783-RC | 70..342 | 47..319 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RA | 1051 | CG6783-RA | 435..788 | 17..370 | 1770 | 100 | Plus |
| fabp-RB | 723 | CG6783-RB | 137..460 | 47..370 | 1620 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 137..409 | 47..319 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 319..47 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11564321..11564371 | 370..320 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:01:43 has no hits.
BS15978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:57 Download gff for
BS15978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:50 Download gff for
BS15978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 424..795 | 12..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:53 Download gff for
BS15978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 429..800 | 12..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:53 Download gff for
BS15978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564309..11564371 | 320..380 | 93 | <- | Minus |
| 3R | 11564440..11564711 | 48..319 | 100 | <- | Minus |
| 3R | 11564784..11564820 | 12..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:50 Download gff for
BS15978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390031..7390093 | 320..380 | 93 | <- | Minus |
| arm_3R | 7390162..7390433 | 48..319 | 100 | <- | Minus |
| arm_3R | 7390506..7390542 | 12..47 | 91 | | Minus |
BS15978.complete Sequence
386 bp assembled on 2007-05-07
GenBank Submission: FJ638007
> BS15978.complete
GAAGTTATCAGTCGACATGTGCAGTCTGCCCCATCATTCATCTTTCGGCG
TCGGTCTGGTGACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAG
GTGACCTTGGAGGGCGATACCTACACCCTGACTACCACCTCCACCTTCAA
GACCTCTGCCATCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCC
TGGACGGTCGCAACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTG
ACGCAGGAGCAGAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCAC
CGACAACGAGCTGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGC
GCGTCTACAAGGCCGTCTAAAAGCTTTCTAGACCAT
BS15978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RA | 354 | CG6783-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
| fabp-RB | 393 | CG6783-PB | 70..393 | 47..370 | 1620 | 100 | Plus |
| fabp-RC | 474 | CG6783-PC | 70..342 | 47..319 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RA | 1051 | CG6783-RA | 435..788 | 17..370 | 1770 | 100 | Plus |
| fabp-RB | 723 | CG6783-RB | 137..460 | 47..370 | 1620 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 137..409 | 47..319 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 319..47 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11564321..11564371 | 370..320 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:15:27 has no hits.
BS15978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:50 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:17 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RA | 424..795 | 12..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:01 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 430..781 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:50 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RA | 424..795 | 12..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:42 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 435..786 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:42 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564323..11564371 | 320..368 | 100 | <- | Minus |
| 3R | 11564440..11564711 | 48..319 | 100 | <- | Minus |
| 3R | 11564784..11564814 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:01 Download gff for
BS15978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390162..7390433 | 48..319 | 100 | <- | Minus |
| arm_3R | 7390506..7390536 | 17..47 | 100 | | Minus |
| arm_3R | 7390045..7390093 | 320..368 | 100 | <- | Minus |
BS15978.pep Sequence
Translation from 16 to 369
> BS15978.pep
MCSLPHHSSFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAIS
FKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFTDNELI
TTLTIGNVKCVRVYKAV*
BS15978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-PA | 117 | CG6783-PA | 1..117 | 1..117 | 595 | 100 | Plus |
| fabp-PB | 130 | CG6783-PB | 24..130 | 11..117 | 536 | 100 | Plus |
| fabp-PC | 157 | CG6783-PC | 24..116 | 11..103 | 456 | 97.8 | Plus |
