Clone Sequence Records
BS15979.3prime Sequence
822 bp (815 high quality bases) assembled on 2007-04-16
> BS15979.3prime
ATGGTCTAGAAAGCTTTTAAGTAATCCCCCTGTATTTCAAGCAGTTTTCC
AATCTCCTCTCAGACAGGCTCCCCAGTGGCTCCTGCCTGCGGCAGCCGCC
GGGTCCTCTCATGTGCAGCCTCACATGATCCCGACACTCGATCCGTCCGT
CTCCATTGCAATCCTCGCCACCATATCGCTGCACATAGCTACGCACAATA
CGCTCGGCGCACTGGACATCCACCACGCATCTTCCGTAGTCCCGGGCGAG
TGAGTCGTCCGGGTCAATTATCCGGAGTGCGTCCTGCCAGTAGACGTGGG
AGATGCGATAAATGCCGCACGGCTCCTCTGGTCGTCCTCGGTGCCTGCAG
ATTGCCGGAATATTATCCGTGGCAGTGGTGGCCATGCAGTCCAGGCACTT
GGCACTGGGCTCTGGGGAGGATGTCGGAGGCGGCTGGAATGTTGTTATCG
TCGAGGTCTGGGCATCCACTCCCGCAGCGGTGACCATGGGAAAGTCCTCC
TCCAGGACCTCCACTTGCCCCCGATCCTTGAGATTGATGTGCAGTCGGCC
CAGATGATGCTTCTGTCTTAAGTGCATGTAAATGGCGCCGATGATGAGCA
GAAGGGCGATGAAAATGGCGCCCGTACTCAGGACTTGGCGAGTGCAGCAG
GACCTTCGAGTCCATCGTTTCCGCTTACGACTTTCCCCGGACATTGACAG
CGCTTCGGCATATTCCTGATGCTCCACCACCTTGGACTCATCCGTTTCCA
CATCATCCTCACTGTATTTGGCCAATTCCGCCACACTGCTGCTGCATGTG
GGCTCCATGTCGACTGATAACT
BS15979.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 792 | CG14823-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 808..466 | 1715 | 100 | Minus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 808..466 | 1715 | 100 | Minus |
CG14823-PD | 390 | CG14823-RD | 1..343 | 808..466 | 1715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..864 | 813..15 | 3980 | 99.9 | Minus |
CG14823-RD | 1108 | CG14823-RD | 655..1105 | 465..15 | 2255 | 100 | Minus |
CG14823-RB | 974 | CG14823-RB | 521..971 | 465..15 | 2255 | 100 | Minus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 813..466 | 1725 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 813..466 | 1725 | 99.7 | Minus |
3L | 28110227 | 3L | 7068003..7068229 | 241..15 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 7067554..7067779 | 466..241 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:05 has no hits.
BS15979.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:58 Download gff for
BS15979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:02 Download gff for
BS15979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..867 | 12..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:05 Download gff for
BS15979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..864 | 15..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:05 Download gff for
BS15979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066726 | 466..816 | 99 | -> | Minus |
3L | 7067555..7067779 | 241..465 | 100 | -> | Minus |
3L | 7068004..7068229 | 15..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:02 Download gff for
BS15979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059826 | 466..816 | 99 | -> | Minus |
arm_3L | 7060655..7060879 | 241..465 | 100 | -> | Minus |
arm_3L | 7061104..7061329 | 15..240 | 100 | | Minus |
BS15979.5prime Sequence
822 bp (763 high quality bases) assembled on 2007-04-16
> BS15979.5prime
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGATGCCCAGACCTCGACGATAACAACATTCCAGCCGCCTCCG
ACATCCTCCCCAGAGCCCAGTGCCAAGTGCCTGGACTGCATGGCCACCAC
TGCCACGGATAATATTCCGGCAATCTGCAGGCACCGAGGACGACCAGAGG
AGCCGTGCGGCATTTATCGCATCTCCCACGTCTACTGGCAGGACGCACTC
CGGATAATTGACCCGGACGACTCACTCGCCCGGGACTACGGAAGATGCGT
GGTGGATGTCCAGTGCGCCGAGCGTATTGTGCGTAGCTATGTGCAGCGAT
ATGGTGGCGAGGATTGCAATGGAGACGGACGGATCGAGTGTCGGGATCAT
GTGAGGCTGCACATGAGAGGACCCGGCGGCTGCCGCAGGCAGGAGCCACT
GGGGAGCCTGTCTGAGAGGAGATTGGAAAACTGCTTGAAATACANGGGGA
TTACTTAAAAGCTTTCTAGACC
BS15979.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 792 | CG14823-RA | 1..792 | 17..808 | 3941 | 99.8 | Plus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PD | 390 | CG14823-RD | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..864 | 12..810 | 3969 | 99.7 | Plus |
CG14823-RD | 1108 | CG14823-RD | 655..1105 | 360..810 | 2244 | 99.8 | Plus |
CG14823-RB | 974 | CG14823-RB | 521..971 | 360..810 | 2244 | 99.8 | Plus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 12..359 | 1725 | 99.7 | Plus |
3L | 28110227 | 3L | 7067554..7067779 | 359..584 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 7068003..7068229 | 584..810 | 1124 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:02:18 has no hits.
BS15979.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:58 Download gff for
BS15979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:53 Download gff for
BS15979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..867 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:02 Download gff for
BS15979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..864 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:02 Download gff for
BS15979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066726 | 9..359 | 99 | -> | Plus |
3L | 7067555..7067779 | 360..584 | 100 | -> | Plus |
3L | 7068004..7068229 | 585..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:53 Download gff for
BS15979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059826 | 9..359 | 99 | -> | Plus |
arm_3L | 7060655..7060879 | 360..584 | 100 | -> | Plus |
arm_3L | 7061104..7061329 | 585..810 | 99 | | Plus |
BS15979.complete Sequence
824 bp assembled on 2007-05-07
GenBank Submission: FJ638008
> BS15979.complete
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGATGCCCAGACCTCGACGATAACAACATTCCAGCCGCCTCCG
ACATCCTCCCCAGAGCCCAGTGCCAAGTGCCTGGACTGCATGGCCACCAC
TGCCACGGATAATATTCCGGCAATCTGCAGGCACCGAGGACGACCAGAGG
AGCCGTGCGGCATTTATCGCATCTCCCACGTCTACTGGCAGGACGCACTC
CGGATAATTGACCCGGACGACTCACTCGCCCGGGACTACGGAAGATGCGT
GGTGGATGTCCAGTGCGCCGAGCGTATTGTGCGTAGCTATGTGCAGCGAT
ATGGTGGCGAGGATTGCAATGGAGACGGACGGATCGAGTGTCGGGATCAT
GTGAGGCTGCACATGAGAGGACCCGGCGGCTGCCGCAGGCAGGAGCCACT
GGGGAGCCTGTCTGAGAGGAGATTGGAAAACTGCTTGAAATACAGGGGGA
TTACTTAAAAGCTTTCTAGACCAT
BS15979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 792 | CG14823-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG14823-RD | 390 | CG14823-PD | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-RB | 351 | CG14823-PB | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..864 | 12..810 | 3980 | 99.9 | Plus |
CG14823-RD | 1108 | CG14823-RD | 655..1105 | 360..810 | 2255 | 100 | Plus |
CG14823-RB | 974 | CG14823-RB | 521..971 | 360..810 | 2255 | 100 | Plus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 12..359 | 1725 | 99.7 | Plus |
3L | 28110227 | 3L | 7068003..7068229 | 584..810 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 7067554..7067779 | 359..584 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:27 has no hits.
BS15979.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:48 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:41 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..870 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:44 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 71..860 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:48 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..870 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:11 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 71..860 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:11 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066384..7066726 | 17..359 | 100 | -> | Plus |
3L | 7067555..7067779 | 360..584 | 100 | -> | Plus |
3L | 7068004..7068225 | 585..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:44 Download gff for
BS15979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059484..7059826 | 17..359 | 100 | -> | Plus |
arm_3L | 7060655..7060879 | 360..584 | 100 | -> | Plus |
arm_3L | 7061104..7061325 | 585..806 | 100 | | Plus |
BS15979.pep Sequence
Translation from 16 to 807
> BS15979.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVDAQTSTITTFQPPPTSSPEPSAKCLDCMATTATDNI
PAICRHRGRPEEPCGIYRISHVYWQDALRIIDPDDSLARDYGRCVVDVQC
AERIVRSYVQRYGGEDCNGDGRIECRDHVRLHMRGPGGCRRQEPLGSLSE
RRLENCLKYRGIT*
BS15979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 263 | CG14823-PA | 1..263 | 1..263 | 1405 | 100 | Plus |
CG14823-PB | 116 | CG14823-PB | 1..114 | 1..114 | 582 | 100 | Plus |
CG14823-PD | 129 | CG14823-PD | 1..114 | 1..114 | 582 | 100 | Plus |
CG6435-PA | 163 | CG6435-PA | 29..144 | 138..258 | 170 | 37.1 | Plus |
CG6429-PA | 159 | CG6429-PA | 31..151 | 137..258 | 166 | 33.1 | Plus |