Clone Sequence Records
BS15980.3prime Sequence
423 bp (423 high quality bases) assembled on 2007-04-16
> BS15980.3prime
ATGGTCTAGAAAGCTTTTAGACGGCCTTGTAGACGCGCACGCACTTAACG
TTGCCGATGGTGAGGGTGGTGATCAGCTCGTTGTCGGTGAACTCGCGGAC
GATGGTGGTGGGCTTGTCGCCCTTCTGCTCCTGCGTCAGCTTGTTGCCAT
CCAGGGTGATGATGCTCTTGACGTTGCGACCGTCCAGGGTCTCCTCGTCG
AACTCAACGCCCAGCTTGAAGCTGATGGCAGAGGTCTTGAAGGTGGAGGT
GGTAGTCAGGGTGTAGGTATCGCCCTCCAAGGTCACCTCCACTGTGGGGC
TCAGGCTGTTGCCCATCTTGCGCGTCACCAGACCGACGCCCAGCTCCTTC
ATGTACTCATCGAAGTTCTCGGACTTGTCCAGCTTGTACTTCTTGCCAAC
GAAAGACATGTCGACTGATAACT
BS15980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6783-PB | 393 | CG6783-RB | 1..393 | 409..17 | 1965 | 100 | Minus |
| CG6783-PC | 474 | CG6783-RC | 1..342 | 409..68 | 1710 | 100 | Minus |
| CG6783-PA | 354 | CG6783-RA | 31..354 | 340..17 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RB | 723 | CG6783-RB | 68..460 | 409..17 | 1965 | 100 | Minus |
| fabp-RC | 1660 | CG6783-RC | 68..409 | 409..68 | 1710 | 100 | Minus |
| sea-RD | 1660 | CG6782-RD | 68..409 | 409..68 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 68..340 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 11566917..11566987 | 339..409 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 11564321..11564371 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:37:07 has no hits.
BS15980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:58 Download gff for
BS15980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-PB | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:19 Download gff for
BS15980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 63..467 | 7..409 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:20 Download gff for
BS15980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 68..472 | 7..409 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:20 Download gff for
BS15980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564309..11564371 | 7..67 | 93 | <- | Plus |
| 3R | 11564440..11564711 | 68..339 | 100 | <- | Plus |
| 3R | 11566918..11566987 | 340..409 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:19 Download gff for
BS15980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7392640..7392709 | 340..409 | 100 | | Plus |
| arm_3R | 7390031..7390093 | 7..67 | 93 | <- | Plus |
| arm_3R | 7390162..7390433 | 68..339 | 100 | <- | Plus |
BS15980.5prime Sequence
423 bp (423 high quality bases) assembled on 2007-04-16
> BS15980.5prime
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCTAAAAGCTTTCTAGACC
BS15980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6783-PB | 393 | CG6783-RB | 1..393 | 17..409 | 1965 | 100 | Plus |
| CG6783-PC | 474 | CG6783-RC | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG6783-PA | 354 | CG6783-RA | 31..354 | 86..409 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RB | 723 | CG6783-RB | 68..460 | 17..409 | 1965 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 68..409 | 17..358 | 1710 | 100 | Plus |
| sea-RD | 1660 | CG6782-RD | 68..409 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 358..86 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11566917..11566987 | 87..17 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 11564321..11564371 | 409..359 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:38 has no hits.
BS15980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:59 Download gff for
BS15980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-PB | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:52 Download gff for
BS15980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 63..467 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:49 Download gff for
BS15980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 68..472 | 17..419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:49 Download gff for
BS15980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564309..11564371 | 359..419 | 93 | <- | Minus |
| 3R | 11564440..11564711 | 87..358 | 100 | <- | Minus |
| 3R | 11566918..11566987 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:52 Download gff for
BS15980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390031..7390093 | 359..419 | 93 | <- | Minus |
| arm_3R | 7390162..7390433 | 87..358 | 100 | <- | Minus |
| arm_3R | 7392640..7392709 | 17..86 | 100 | | Minus |
BS15980.complete Sequence
425 bp assembled on 2007-05-07
GenBank Submission: FJ638009
> BS15980.complete
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCTAAAAGCTTTCTAGACCAT
BS15980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RB | 393 | CG6783-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
| fabp-RC | 474 | CG6783-PC | 1..342 | 17..358 | 1710 | 100 | Plus |
| fabp-RA | 354 | CG6783-PA | 31..354 | 86..409 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RB | 723 | CG6783-RB | 68..460 | 17..409 | 1965 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 68..409 | 17..358 | 1710 | 100 | Plus |
| sea-RD | 1660 | CG6782-RD | 68..409 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 358..86 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11566917..11566987 | 87..17 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 11564321..11564371 | 409..359 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:32 has no hits.
BS15980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:51 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RB | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:19 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RB | 63..467 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:18 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 63..453 | 17..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:52 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RB | 63..467 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:51 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 68..458 | 17..407 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:51 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564323..11564371 | 359..407 | 100 | <- | Minus |
| 3R | 11564440..11564711 | 87..358 | 100 | <- | Minus |
| 3R | 11566918..11566987 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:18 Download gff for
BS15980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7392640..7392709 | 17..86 | 100 | | Minus |
| arm_3R | 7390045..7390093 | 359..407 | 100 | <- | Minus |
| arm_3R | 7390162..7390433 | 87..358 | 100 | <- | Minus |
BS15980.pep Sequence
Translation from 16 to 408
> BS15980.pep
MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYT
LTTTSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKP
TTIVREFTDNELITTLTIGNVKCVRVYKAV*
BS15980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-PB | 130 | CG6783-PB | 1..130 | 1..130 | 656 | 100 | Plus |
| fabp-PC | 157 | CG6783-PC | 1..116 | 1..116 | 576 | 98.3 | Plus |
| fabp-PA | 117 | CG6783-PA | 11..117 | 24..130 | 536 | 100 | Plus |
