Clone Sequence Records
BS15982.3prime Sequence
924 bp (764 high quality bases) assembled on 2007-04-16
> BS15982.3prime
ATGGTCTAGAAAGCTTTTAGAAGCTGTCCTCGTTGGCGATGAATTCGTCG
CGAATCTTTTGCAGCTTTGTGATGAGTTCCGCCACGGAGACCTCGCCGTG
CACCTTGTTGTCCCGAGTGCGCACGTTAACGGTATTCGAGGAGCGCTCCT
TGTCGCCCACCACCAGAATGAAGTTGAACTGGGCCAACTGAGCATTGCGT
ATCTTCTTGTTCATCGTGTCGCCGGCATCGCAATCCGCCTCGCTCATGAA
TCCAGCATCGTGCAACTGATCCCGCACTGACTGGGCGTACTGATCATAGG
CAGGACCCACTGGAACGACCATCACCTGGCGCGGTGATAGCCAGAAGGGC
CACTTGCCAGCAAAGTTCTCCGTGAGAATGGCAATCATCCGCTCCACTGA
GCCAAGAATAGCGCGATGGATGATCACCGGCCTCTTCTTCTCGCCATCGT
CGGCGATGTAGCTGAGATTAAAACGAATTGGCAGCTGGAAGTCCAACTGG
ATGGTGGCGCACTGATGGGCACGCTTCAGTGCATCCATAATGGTAATATC
AATCTTCGGTCCGTAGAAGGCGCCATCGCCGGGGTTCTCCTTCCACGGCA
TTCCAAACTCGTTGAGTGATTCAGCCAGCGCCTTTTCCGCATCATTCCAC
TGTTCCAACTCGCCAAGGTAATTATCCGGGCGTGTGGACAGCACCAGCTG
GAAGGAGAATCCGAAAATGGTATACACATACTTCAGGAACTCCAGGCAGC
CCTTCATTTCGCTTTTAATCTGCTCGGGGGCACAGAAGATGTGCGCATCG
TCCTGCTGGAAGCGACGCACGCGAGTTAATCCGGTTAAAGCACCGGAGAG
CTCGTTGCGATGAAGCACACCGAAGTCGGCCATTCGCAGTGGCAGCTCTC
GCCAGGATCGATTGCGGTTATCGA
BS15982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5353-PB | 2073 | Aats-thr-RB | 1166..2073 | 924..17 | 4540 | 100 | Minus |
| CG5353-PA | 2244 | Aats-thr-RA | 1337..2244 | 924..17 | 4540 | 100 | Minus |
| CG5353-PC | 2073 | Aats-thr-RC | 1166..2073 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RD | 2796 | CG5353-RD | 1481..2388 | 924..17 | 4540 | 100 | Minus |
| Aats-thr-RC | 2314 | CG5353-RC | 1275..2182 | 924..17 | 4540 | 100 | Minus |
| Aats-thr-RA | 2520 | CG5353-RA | 1481..2388 | 924..17 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12105855..12106762 | 924..17 | 4540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:28 has no hits.
BS15982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:59 Download gff for
BS15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5353-PC | 1167..2073 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:17 Download gff for
BS15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 1260..2173 | 7..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:54:13 Download gff for
BS15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RA | 1482..2395 | 7..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:54:13 Download gff for
BS15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12105856..12106769 | 7..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:17 Download gff for
BS15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12105856..12106769 | 7..923 | 99 | | Minus |
BS15982.5prime Sequence
898 bp (790 high quality bases) assembled on 2007-04-16
> BS15982.5prime
GAAGTTATCAGTCGACATGGGCGACAACGTGGTGACGGAACTAAATAACT
TGGATTTGAACAATCAAAAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAG
AAGCCATCCGGCGGTGGAGATACTCGCAAGGAACTCAGTCCCTTGCCCAA
GTACATCGAGGAGCGCAATGTCTTCTGGGAGAAGTGCAAGGCGGAATACG
AGGCCGAACTGGCGGCCAAGAAGCGTGAGCCCATCAAGGTGACACTGCCC
GATGGCAAGCAGGTGGACGCCACCTCCTGGGAGACCACTCCGTACGAAGT
GGCCCGCGGCATTAGTCAGGGTCTCGCTGACAACACCGTCATCTCCAAGG
TGAACGGCGAGGTGTGGGATTTGGACCGTGTGCTCGAGGGAAACTGCACC
CTGCAGCTTCTCAAGTTCGACGACCCTGAGGCGCAGGCCGTCTTCTGGCA
CAGCTCTGCCCACATCATGGGTGAGGCCATGGAGCGCATCTATGGTGGAC
ACCTGTGCTACGGTCCGCCCATTGAAAACGGCTTCTACTACGACATGCAT
CTGGAGGGCGAGGGTATCTCCACCAACGACTACGGCGCCATGGAGGGTCT
GGTTAAGCAAATTGTCAAGGAGAAGCAGAACTTCGAACGTCTGGAGATGA
AGAAGTCCGACCTGCTGGAGATGTTCAAATACAATGAGTTCAAGGTGCGC
ATTCTCAACGAGAAGGTGACCACCGACCGCACCACTGTCTACAAGTGCGG
TTCTTTGATCGATCTCTGCCGCGGACCTCATGTTCGTCACACCGGCAAGG
TGAAGGCCCTGAAGATCACCAAGAACTCCTCTACCTACTGGGAGGGTAAG
GCTGACGCTGAGACACTGCAACGCGTCTACGGCATCTCGTTCCCCGAC
BS15982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5353-PA | 2244 | Aats-thr-RA | 162..990 | 70..898 | 4145 | 100 | Plus |
| CG5353-PB | 2073 | Aats-thr-RB | 1..819 | 80..898 | 4095 | 100 | Plus |
| CG5353-PC | 2073 | Aats-thr-RC | 1..819 | 80..898 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RB | 2298 | CG5353-RB | 31..912 | 17..898 | 4410 | 100 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 306..1134 | 70..898 | 4145 | 100 | Plus |
| Aats-thr-RA | 2520 | CG5353-RA | 306..1134 | 70..898 | 4145 | 100 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 31..86 | 17..72 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12104687..12105121 | 131..565 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 12105176..12105508 | 566..898 | 1665 | 100 | Plus |
| 2L | 23513712 | 2L | 12104490..12104552 | 69..131 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 12103781..12103836 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:06:42 has no hits.
BS15982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:59 Download gff for
BS15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5353-PA | 162..990 | 70..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:16 Download gff for
BS15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..912 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:56 Download gff for
BS15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..912 | 17..898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:56 Download gff for
BS15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12103781..12103834 | 17..70 | 100 | -> | Plus |
| 2L | 12104492..12104552 | 71..131 | 100 | -> | Plus |
| 2L | 12104688..12105121 | 132..565 | 100 | -> | Plus |
| 2L | 12105176..12105508 | 566..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:16 Download gff for
BS15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12103781..12103834 | 17..70 | 100 | -> | Plus |
| arm_2L | 12104492..12104552 | 71..131 | 100 | -> | Plus |
| arm_2L | 12104688..12105121 | 132..565 | 100 | -> | Plus |
| arm_2L | 12105176..12105508 | 566..898 | 100 | | Plus |
BS15982.complete Sequence
2168 bp assembled on 2012-04-25
GenBank Submission: KX804652
> BS15982.complete
GAAGTTATCAGTCGACATGGGCGACAACGTGGTGACGGAACTAAATAACT
TGGATTTGAACAATCAAAAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAG
AAGCCATCCGGCGGTGGAGATACTCGCAAGGAACTCAGTCCCTTGCCCAA
GTACATCGAGGAGCGCAATGTCTTCTGGGAGAAGTGCAAGGCGGAATACG
AGGCCGAACTGGCGGCCAAGAAGCGTGAGCCCATCAAGGTGACACTGCCC
GATGGCAAGCAGGTGGACGCCACCTCCTGGGAGACCACTCCGTACGAAGT
GGCCCGCGGCATTAGTCAGGGTCTCGCTGACAACACCGTCATCTCCAAGG
TGAACGGCGAGGTGTGGGATTTGGACCGTGTGCTCGAGGGAAACTGCACC
CTGCAGCTTCTCAAGTTCGACGACCCTGAGGCGCAGGCCGTCTTCTGGCA
CAGCTCTGCCCACATCATGGGTGAGGCCATGGAGCGCATCTATGGTGGAC
ACCTGTGCTACGGTCCGCCCATTGAAAACGGCTTCTACTACGACATGCAT
CTGGAGGGCGAGGGTATCTCCACCAACGACTACGGCGCCATGGAGGGTCT
GGTTAAGCAAATTGTCAAGGAGAAGCAGAACTTCGAACGTCTGGAGATGA
AGAAGTCCGACCTGCTGGAGATGTTCAAATACAATGAGTTCAAGGTGCGC
ATTCTCAACGAGAAGGTGACCACCGACCGCACCACTGTCTACAAGTGCGG
TTCTTTGATCGATCTCTGCCGCGGACCTCATGTTCGTCACACCGGCAAGG
TGAAGGCCCTGAAGATCACCAAGAACTCCTCTACCTACTGGGAGGGTAAG
GCTGACGCTGAGACACTGCAACGCGTCTACGGCATCTCGTTCCCCGACCC
GAAGCAGCTCAAGGAGTGGGAGAAACTTCAGGAGGAGGCGGCTAAGCGTG
ATCACCGCAAAATCGGTCGCGAGCAGGAGCTGTTCTTCTTCCATGAACTT
TCGCCTGGCTCATGCTTTTTCCAGCCGCGAGGAGCGCACATCTACAACAC
CCTGATGGGCTTCATCAAGGCGGAATATAGAAAGCGTGGTTTCCAAGAAG
TCATTTCCCCCAACATCTACAACGCTAAGTTGTGGATGACCTCCGGCCAC
TGGCAGCACTATGCCGAGAACATGTTCTCCTTCGAGGCCGAGAAGGAGAA
GTTCGCCCTCAAGCCCATGAATTGTCCAGGACATTGTCTCATCTTCGATA
ACCGCAATCGATCCTGGCGAGAGCTGCCACTGCGAATGGCCGACTTCGGT
GTGCTTCATCGCAACGAGCTCTCCGGTGCTTTAACCGGATTAACTCGCGT
GCGTCGCTTCCAGCAGGACGATGCGCACATCTTCTGTGCCCCCGAGCAGA
TTAAAAGCGAAATGAAGGGCTGCCTGGAGTTCCTGAAGTATGTGTATACC
ATTTTCGGATTCTCCTTCCAGCTGGTGCTGTCCACACGCCCGGATAATTA
CCTTGGCGAGTTGGAACAGTGGAATGATGCGGAAAAGGCGCTGGCTGAAT
CACTCAACGAGTTTGGAATGCCGTGGAAGGAGAACCCCGGCGATGGCGCC
TTCTACGGACCGAAGATTGATATTACCATTATGGATGCACTGAAGCGTGC
CCATCAGTGCGCCACCATCCAGTTGGACTTCCAGCTGCCAATTCGTTTTA
ATCTCAGCTACATCGCCGACGATGGCGAGAAGAAGAGGCCGGTGATCATC
CATCGCGCTATTCTTGGCTCAGTGGAGCGGATGATTGCCATTCTCACGGA
GAACTTTGCTGGCAAGTGGCCCTTCTGGCTATCACCGCGCCAGGTGATGG
TCGTTCCAGTGGGTCCTGCCTATGATCAGTACGCCCAGTCAGTGCGGGAT
CAGTTGCACGATGCTGGATTCATGAGCGAGGCGGATTGCGATGCCGGCGA
CACGATGAACAAGAAGATACGCAATGCTCAGTTGGCCCAGTTCAACTTCA
TTCTGGTGGTGGGCGACAAGGAGCGCTCCTCGAATACCGTTAACGTGCGC
ACTCGGGACAACAAGGTGCACGGCGAGGTCTCCGTGGCGGAACTCATCAC
AAAGCTGCAAAAGATTCGCGACGAATTCATCGCCAACGAGGACAGCTTCT
AAAAGCTTTCTAGACCAT
BS15982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RD | 2244 | CG5353-PD | 162..2244 | 70..2152 | 10415 | 100 | Plus |
| Aats-thr-RA | 2244 | CG5353-PA | 162..2244 | 70..2152 | 10415 | 100 | Plus |
| Aats-thr-RC | 2073 | CG5353-PC | 1..2073 | 80..2152 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RB | 2298 | CG5353-RB | 31..2166 | 17..2152 | 10680 | 100 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 306..2388 | 70..2152 | 10415 | 100 | Plus |
| Aats-thr-RA | 2520 | CG5353-RA | 306..2388 | 70..2152 | 10415 | 100 | Plus |
| Aats-thr-RD | 2796 | CG5353-RD | 31..86 | 17..72 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12105176..12106762 | 566..2152 | 7935 | 100 | Plus |
| 2L | 23513712 | 2L | 12104687..12105121 | 131..565 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 12104490..12104552 | 69..131 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 12103781..12103836 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:13:04 has no hits.
BS15982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:50 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RA | 162..2244 | 70..2152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:49:17 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 48..2190 | 17..2162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:36 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 48..2181 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:59 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..2164 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:46 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 48..2185 | 17..2150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:45 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RB | 31..2164 | 17..2150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:45 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12103781..12103834 | 17..70 | 100 | -> | Plus |
| 2L | 12104492..12104552 | 71..131 | 100 | -> | Plus |
| 2L | 12104688..12105121 | 132..565 | 100 | -> | Plus |
| 2L | 12105176..12106760 | 566..2150 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:59 Download gff for
BS15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12103781..12103834 | 17..70 | 100 | -> | Plus |
| arm_2L | 12104492..12104552 | 71..131 | 100 | -> | Plus |
| arm_2L | 12104688..12105121 | 132..565 | 100 | -> | Plus |
| arm_2L | 12105176..12106760 | 566..2150 | 100 | | Plus |
BS15982.pep Sequence
Translation from 16 to 2151
> BS15982.pep
MGDNVVTELNNLDLNNQKAAKMKKEKKEKPSGGGDTRKELSPLPKYIEER
NVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARGIS
QGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHI
MGEAMERIYGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIV
KEKQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDL
CRGPHVRHTGKVKALKITKNSSTYWEGKADAETLQRVYGISFPDPKQLKE
WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFI
KAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEKFALKP
MNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ
DDAHIFCAPEQIKSEMKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELE
QWNDAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRAHQCAT
IQLDFQLPIRFNLSYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK
WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDAGDTMNKK
IRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELITKLQKI
RDEFIANEDSF*
BS15982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-PD | 747 | CG5353-PD | 55..747 | 19..711 | 3691 | 100 | Plus |
| Aats-thr-PA | 747 | CG5353-PA | 55..747 | 19..711 | 3691 | 100 | Plus |
| Aats-thr-PC | 690 | CG5353-PC | 1..690 | 22..711 | 3678 | 100 | Plus |
| Aats-thr-PB | 690 | CG5353-PB | 1..690 | 22..711 | 3678 | 100 | Plus |
