Clone Sequence Records
BS15984.3prime Sequence
829 bp (780 high quality bases) assembled on 2007-04-16
> BS15984.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGCGACTCCACCTGGGGCGTGGAGTTG
CGACGAGGCTTCGCCGGAGGATCGTTCCAGGGCTGGACATTCGCCTTGCC
GAAGATCACGTACAGAGTATTGCCCACCAGGTAGAATCCGGCTGCAATGA
AGAACACAATGCGCCACTGCTCGGGATCGTGCTCATTTGTGACAATGAAT
CCGACGATCAGCGGAGCAATGATGCTCATAATGTTGGCCACGCCGTTGGT
GATGCCCATGAGGATGCCAGCGAAGTTGGGCGACAGATCGATGTGGTTCG
TGTTGAAGCCCAGGTAGGTCGCTCCATTCATGCCCACGGTGAAACAGAGT
AGGACCACAGCCAGTTCCGACTGATCTGGGTTCACATAGCCAAGGCCAAC
CAAGGTGACCATAGGAATCCACAGACCAATGGAGTTGAAGAGCTTCCTGC
TCGTAGACCTTGAAATGCAGTTGCGGTTGTTCAACTGTGCGGATATCGAC
GAGAATACAAAGGACATGGCGAACATGCAGACGTAGGGCAGCGAGGAGAG
AAGAGCATTCGACTTGATGTCCTTGCCCAGGATGTTCTTCATGTAGCTGG
GGATCTCGGTGAGCAGGGTCCAGAAACCCCAGTTGTGCACCGAGTGTGAG
ACGATCAGGACGAGGAAAGCGGGTGAAGTGAAGAAGCTCAGCCAGGGCGT
GGGCAACTGCTCCTTCGGCTGTTCCTGGCCACCGCTCACCTCGTCGGCCT
GCGACATCTCGATCAGCTTCTTCTCCTCCGCCGAAATGGACTTGCACTCT
TGTGGCGATCCTGCGCCGAAGAAGAAGTA
BS15984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-PA | 1476 | CG15096-RA | 664..1476 | 829..17 | 4065 | 100 | Minus |
| CG15096-PB | 1428 | CG15096-RB | 616..1428 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RC | 3536 | CG15096-RC | 2468..3281 | 829..16 | 4070 | 100 | Minus |
| CG15096-RB | 1783 | CG15096-RB | 715..1528 | 829..16 | 4070 | 100 | Minus |
| CG15096-RA | 2060 | CG15096-RA | 992..1805 | 829..16 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18808890..18809537 | 182..829 | 3240 | 100 | Plus |
| 2R | 25286936 | 2R | 18808611..18808778 | 16..183 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:45 has no hits.
BS15984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:00 Download gff for
BS15984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-PB | 617..1428 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:55 Download gff for
BS15984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RA | 993..1814 | 10..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:50 Download gff for
BS15984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RA | 993..1814 | 10..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:50 Download gff for
BS15984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18808602..18808776 | 10..181 | 98 | <- | Plus |
| 2R | 18808890..18809536 | 182..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:55 Download gff for
BS15984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14696107..14696281 | 10..181 | 98 | <- | Plus |
| arm_2R | 14696395..14697041 | 182..828 | 100 | | Plus |
BS15984.complete Sequence
1460 bp assembled on 2010-06-25
GenBank Submission: KX805538
> BS15984.complete
GAAGTTATCAGTCGACATGGTTACCACTGTGAAGAATCGTCGCTTTGAGG
ATGAAGACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTC
TTTGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGT
GGTGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATA
ATTGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGC
TATGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGG
CAAAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCC
TGACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTA
CGAGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACAC
GATCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCT
GTGCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGT
GGAGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTC
TGGAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAG
GATCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATC
GAGATGTCGCAGGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGA
GCAGTTGCCCACGCCCTGGCTGAGCTTCTTCACTTCACCCGCTTTCCTCG
TCCTGATCGTCTCACACTCGGTGCACAACTGGGGTTTCTGGACCCTGCTC
ACCGAGATCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTC
GAATGCTCTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCT
TTGTATTCTCGTCGATATCCGCACAGTTGAACAACCGCAACTGCATTTCA
AGGTCTACGAGCAGGAAGCTCTTCAACTCCATTGGTCTGTGGATTCCTAT
GGTCACCTTGGTTGGCCTTGGCTATGTGAACCCAGATCAGTCGGAACTGG
CTGTGGTCCTACTCTGTTTCACCGTGGGCATGAATGGAGCGACCTACCTG
GGCTTCAACACGAACCACATCGATCTGTCGCCCAACTTCGCTGGCATCCT
CATGGGCATCACCAACGGCGTGGCCAACATTATGAGCATCATTGCTCCGC
TGATCGTCGGATTCATTGTCACAAATGAGCACGATCCCGAGCAGTGGCGC
ATTGTGTTCTTCATTGCAGCCGGATTCTACCTGGTGGGCAATACTCTGTA
CGTGATCTTCGGCAAGGCGAATGTCCAGCCCTGGAACGATCCTCCGGCGA
AGCCTCGTCGCAACTCCACGCCCCAGGTGGAGTCGCAGCACTAGAAGCTT
TCTAGACCAT
BS15984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RB | 1428 | CG15096-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| CG15096-RC | 1476 | CG15096-PC | 89..1476 | 57..1444 | 6940 | 100 | Plus |
| CG15096-RA | 1476 | CG15096-PA | 89..1476 | 57..1444 | 6940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RB | 1783 | CG15096-RB | 100..1528 | 17..1445 | 7145 | 100 | Plus |
| CG15096-RC | 3536 | CG15096-RC | 1893..3281 | 57..1445 | 6945 | 100 | Plus |
| CG15096-RA | 2060 | CG15096-RA | 417..1805 | 57..1445 | 6945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18808890..18809975 | 1279..194 | 5430 | 100 | Minus |
| 2R | 25286936 | 2R | 18808611..18808778 | 1445..1278 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 18810041..18810180 | 194..55 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 18811322..18811361 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:48:04 has no hits.
BS15984.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:50 Download gff for
BS15984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 98..1525 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:49 Download gff for
BS15984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 100..1527 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:14 Download gff for
BS15984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 100..1527 | 17..1444 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:14 Download gff for
BS15984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18810042..18810178 | 57..193 | 100 | <- | Minus |
| 2R | 18811322..18811361 | 17..56 | 100 | | Minus |
| 2R | 18808612..18808776 | 1280..1444 | 100 | <- | Minus |
| 2R | 18808890..18809975 | 194..1279 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:49 Download gff for
BS15984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14697547..14697683 | 57..193 | 100 | <- | Minus |
| arm_2R | 14698827..14698866 | 17..56 | 100 | | Minus |
| arm_2R | 14696117..14696281 | 1280..1444 | 100 | <- | Minus |
| arm_2R | 14696395..14697480 | 194..1279 | 100 | <- | Minus |
BS15984.pep Sequence
Translation from 16 to 1443
> BS15984.pep
MVTTVKNRRFEDEDSGLGVRHFQVLLLFFALTVAYGCRVNLSVAVVAMTD
AASVNPDFPEYNWSEKTKSLLLSSFFWGYVITQVPAGQLARKYGGKVMIL
SGLAICSILNILTPICAKIGGWQLVCALRVVEGLCQGVVFPSTHTILSQW
APPKERATLGTCAYSGNQFGTILMLATSGVIAASPIGWPSIFYISGGIGC
VWSVVYFFFGAGSPQECKSISAEEKKLIEMSQADEVSGGQEQPKEQLPTP
WLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSYMKNILGKDIKSNALLS
SLPYVCMFAMSFVFSSISAQLNNRNCISRSTSRKLFNSIGLWIPMVTLVG
LGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNHIDLSPNFAGILMGITN
GVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIAAGFYLVGNTLYVIFGK
ANVQPWNDPPAKPRRNSTPQVESQH*
BS15984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-PB | 475 | CG15096-PB | 1..475 | 1..475 | 2494 | 100 | Plus |
| CG15096-PC | 491 | CG15096-PC | 18..491 | 6..475 | 2429 | 98.3 | Plus |
| CG15096-PA | 491 | CG15096-PA | 18..491 | 6..475 | 2429 | 98.3 | Plus |
| MFS15-PA | 497 | CG15094-PA | 25..471 | 18..460 | 1325 | 56.3 | Plus |
| MFS15-PB | 443 | CG15094-PB | 1..417 | 48..460 | 1219 | 55.4 | Plus |
