Clone BS15985 Report

Search the DGRC for BS15985

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptPHGPx-RA
Protein status:BS15985.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15985.3prime Sequence

747 bp (747 high quality bases) assembled on 2007-04-16

> BS15985.3prime
ATGGTCTAGAAAGCTTCTACAGCAGCTTTTCAATGTCCTTGGCGATGTCC
ATGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTT
CACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGG
TCTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTC
ACATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAG
GTGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACT
GATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCC
TTTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGA
GGCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAA
CATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCG
TTCTTGTAATCTCCGTTAGCAGACATGTCGATGGCAGCTGCTGTGGAGTG
CTGGGCGGCTGAGGAGATGGCGTTCATGGGCGTGGCCGCACAGCTCACGG
GAAGCATGATGGTGCAGAGGCGAAGGCACTGCCTCTGACCGCGACTCAGC
TCGAGGAAGGGGCCAGGGGTCCGCCTCATCGAGTAGCACCTGAGGGCCTG
GCGGGAAATGTTCTGAAACTGCCTGAGACTCATGTCGACTGATAACT

BS15985.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PD 717 PHGPx-RD 1..717 733..17 3560 99.8 Minus
CG12013-PC 597 PHGPx-RC 82..597 532..17 2580 100 Minus
CG12013-PB 510 PHGPx-RB 1..510 526..17 2550 100 Minus
CG12013-PA 510 PHGPx-RA 1..510 526..17 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 114..831 733..16 3575 99.9 Minus
PHGPx-RA 803 CG12013-RA 104..620 532..16 2585 100 Minus
PHGPx-RC 1148 CG12013-RC 449..965 532..16 2585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 532..207 1630 100 Minus
3L 28110227 3L 3327353..3327553 733..533 990 99.5 Minus
3L 28110227 3L 3328249..3328443 210..16 975 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:24:39 has no hits.

BS15985.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:01 Download gff for BS15985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 1..717 17..733 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:47 Download gff for BS15985.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 112..831 16..736 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:47 Download gff for BS15985.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 112..831 16..736 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:47 Download gff for BS15985.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327351..3327553 533..736 99 -> Minus
3L 3327860..3328183 209..532 100 -> Minus
3L 3328251..3328443 16..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:47 Download gff for BS15985.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327351..3327553 533..736 99 -> Minus
arm_3L 3327860..3328183 209..532 100 -> Minus
arm_3L 3328251..3328443 16..208 100   Minus

BS15985.5prime Sequence

747 bp (747 high quality bases) assembled on 2007-04-16

> BS15985.5prime
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACC

BS15985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PD 717 PHGPx-RD 1..717 17..733 3560 99.8 Plus
CG12013-PC 597 PHGPx-RC 82..597 218..733 2580 100 Plus
CG12013-PB 510 PHGPx-RB 1..510 224..733 2550 100 Plus
CG12013-PA 510 PHGPx-RA 1..510 224..733 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 114..831 17..734 3575 99.9 Plus
PHGPx-RA 803 CG12013-RA 104..620 218..734 2585 100 Plus
PHGPx-RC 1148 CG12013-RC 449..965 218..734 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 218..543 1630 100 Plus
3L 28110227 3L 3327353..3327553 17..217 990 99.5 Plus
3L 28110227 3L 3328249..3328443 540..734 975 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:08:28 has no hits.

BS15985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:01 Download gff for BS15985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:10 Download gff for BS15985.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 112..831 14..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:18 Download gff for BS15985.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 112..831 14..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:18 Download gff for BS15985.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327351..3327553 14..217 99 -> Plus
3L 3327860..3328183 218..541 100 -> Plus
3L 3328251..3328443 542..734 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:10 Download gff for BS15985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327351..3327553 14..217 99 -> Plus
arm_3L 3327860..3328183 218..541 100 -> Plus
arm_3L 3328251..3328443 542..734 100   Plus

BS15985.complete Sequence

749 bp assembled on 2007-05-07

GenBank Submission: FJ638010

> BS15985.complete
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACCAT

BS15985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 717 CG12013-PD 1..717 17..733 3570 99.9 Plus
PHGPx-RC 597 CG12013-PC 82..597 218..733 2580 100 Plus
PHGPx-RA 510 CG12013-PA 1..510 224..733 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 114..831 17..734 3575 99.9 Plus
PHGPx-RA 803 CG12013-RA 104..620 218..734 2585 100 Plus
PHGPx-RC 1148 CG12013-RC 449..965 218..734 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 218..543 1630 100 Plus
3L 28110227 3L 3327353..3327553 17..217 990 99.5 Plus
3L 28110227 3L 3328249..3328443 540..734 975 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:45:45 has no hits.

BS15985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:31 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:18 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 80..799 14..734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:44 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 114..830 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:31 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 80..799 14..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:44 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 114..830 17..733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:44 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327353..3327553 17..217 99 -> Plus
3L 3327860..3328183 218..541 100 -> Plus
3L 3328251..3328442 542..733 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:44 Download gff for BS15985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327353..3327553 17..217 99 -> Plus
arm_3L 3327860..3328183 218..541 100 -> Plus
arm_3L 3328251..3328442 542..733 100   Plus

BS15985.pep Sequence

Translation from 16 to 732

> BS15985.pep
MSLRQFQNISRQALRCYSMRRTPGPFLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*

BS15985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PD 238 CG12013-PD 1..238 1..238 1232 99.6 Plus
PHGPx-PC 198 CG12013-PC 28..198 68..238 897 100 Plus
PHGPx-PA 169 CG12013-PA 1..169 70..238 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 75..238 403 50.6 Plus