Clone Sequence Records
BS15985.3prime Sequence
747 bp (747 high quality bases) assembled on 2007-04-16
> BS15985.3prime
ATGGTCTAGAAAGCTTCTACAGCAGCTTTTCAATGTCCTTGGCGATGTCC
ATGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTT
CACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGG
TCTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTC
ACATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAG
GTGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACT
GATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCC
TTTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGA
GGCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAA
CATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCG
TTCTTGTAATCTCCGTTAGCAGACATGTCGATGGCAGCTGCTGTGGAGTG
CTGGGCGGCTGAGGAGATGGCGTTCATGGGCGTGGCCGCACAGCTCACGG
GAAGCATGATGGTGCAGAGGCGAAGGCACTGCCTCTGACCGCGACTCAGC
TCGAGGAAGGGGCCAGGGGTCCGCCTCATCGAGTAGCACCTGAGGGCCTG
GCGGGAAATGTTCTGAAACTGCCTGAGACTCATGTCGACTGATAACT
BS15985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PD | 717 | PHGPx-RD | 1..717 | 733..17 | 3560 | 99.8 | Minus |
CG12013-PC | 597 | PHGPx-RC | 82..597 | 532..17 | 2580 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..510 | 526..17 | 2550 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..510 | 526..17 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..831 | 733..16 | 3575 | 99.9 | Minus |
PHGPx-RA | 803 | CG12013-RA | 104..620 | 532..16 | 2585 | 100 | Minus |
PHGPx-RC | 1148 | CG12013-RC | 449..965 | 532..16 | 2585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 532..207 | 1630 | 100 | Minus |
3L | 28110227 | 3L | 3327353..3327553 | 733..533 | 990 | 99.5 | Minus |
3L | 28110227 | 3L | 3328249..3328443 | 210..16 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:24:39 has no hits.
BS15985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:01 Download gff for
BS15985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 1..717 | 17..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:47 Download gff for
BS15985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..831 | 16..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:47 Download gff for
BS15985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..831 | 16..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:47 Download gff for
BS15985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327351..3327553 | 533..736 | 99 | -> | Minus |
3L | 3327860..3328183 | 209..532 | 100 | -> | Minus |
3L | 3328251..3328443 | 16..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:47 Download gff for
BS15985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327351..3327553 | 533..736 | 99 | -> | Minus |
arm_3L | 3327860..3328183 | 209..532 | 100 | -> | Minus |
arm_3L | 3328251..3328443 | 16..208 | 100 | | Minus |
BS15985.5prime Sequence
747 bp (747 high quality bases) assembled on 2007-04-16
> BS15985.5prime
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACC
BS15985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PD | 717 | PHGPx-RD | 1..717 | 17..733 | 3560 | 99.8 | Plus |
CG12013-PC | 597 | PHGPx-RC | 82..597 | 218..733 | 2580 | 100 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..510 | 224..733 | 2550 | 100 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..510 | 224..733 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..831 | 17..734 | 3575 | 99.9 | Plus |
PHGPx-RA | 803 | CG12013-RA | 104..620 | 218..734 | 2585 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 449..965 | 218..734 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 540..734 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:08:28 has no hits.
BS15985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:01 Download gff for
BS15985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:10 Download gff for
BS15985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..831 | 14..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:18 Download gff for
BS15985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..831 | 14..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:18 Download gff for
BS15985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327351..3327553 | 14..217 | 99 | -> | Plus |
3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
3L | 3328251..3328443 | 542..734 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:10 Download gff for
BS15985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327351..3327553 | 14..217 | 99 | -> | Plus |
arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
arm_3L | 3328251..3328443 | 542..734 | 100 | | Plus |
BS15985.complete Sequence
749 bp assembled on 2007-05-07
GenBank Submission: FJ638010
> BS15985.complete
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACCAT
BS15985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 717 | CG12013-PD | 1..717 | 17..733 | 3570 | 99.9 | Plus |
PHGPx-RC | 597 | CG12013-PC | 82..597 | 218..733 | 2580 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..510 | 224..733 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..831 | 17..734 | 3575 | 99.9 | Plus |
PHGPx-RA | 803 | CG12013-RA | 104..620 | 218..734 | 2585 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 449..965 | 218..734 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 540..734 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:45 has no hits.
BS15985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:31 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:18 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 80..799 | 14..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:44 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..830 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:31 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 80..799 | 14..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:44 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..830 | 17..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:44 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327353..3327553 | 17..217 | 99 | -> | Plus |
3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
3L | 3328251..3328442 | 542..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:44 Download gff for
BS15985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327353..3327553 | 17..217 | 99 | -> | Plus |
arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
arm_3L | 3328251..3328442 | 542..733 | 100 | | Plus |
BS15985.pep Sequence
Translation from 16 to 732
> BS15985.pep
MSLRQFQNISRQALRCYSMRRTPGPFLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*
BS15985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PD | 238 | CG12013-PD | 1..238 | 1..238 | 1232 | 99.6 | Plus |
PHGPx-PC | 198 | CG12013-PC | 28..198 | 68..238 | 897 | 100 | Plus |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 70..238 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 75..238 | 403 | 50.6 | Plus |