Clone Sequence Records
BS15987.3prime Sequence
816 bp (792 high quality bases) assembled on 2007-04-16
> BS15987.3prime
ATGGTCTAGAAAGCTTTCACTTTGTGTCTGCCTGCATAATGCGCCTGTAC
TGTCGTTGGTTCTCCAGCAGCTGCAGGAACACCTTGTACTTGCGATTGTG
GAACTCAAGCGTTTCCGCGTTCGGCTTCACCAGCTGGCCAGTGCCACCCA
TGGATTTCGAGGCGCTCTCCAAGCTGTCGAAGTGGCCGGAGGCAGCGGCT
CCCAAGGCAGCAGCGCCCACCAGAACCATTTCCTGTTCATCCGGAATCAG
TGCGGGCAGATTGCAAATGTCCGCATGACATTGTACGTACAGAGGATTCT
TGGCCAATCCCCCGCAGAAAAGTAGCGTTTGAAAGGGAGCTCTACCGTAC
TGGTAAAGGTTTTCAATAATGTGACGTGTGCCGTAAGCCAGAGCTTGGAC
GAACGCCAAGTATTTGATGGCCAGAGATTCAGTTCCTCGCGTCATGTCCA
GTCCAGTAATCACTCCTCGCAGCGTGGGATCTGCGATGGGCGACCGATTG
CCATGCAAGTCCGGCCAGACATGGACATCCTGGGTGAGACAGCCCACCTG
GCTTAATCCTCGAGCTGCTGCCAGTTCCGGCAGCAACTTATTAAGATGCT
GGTAGATAAACTTATCCTCTCCCAATTGGGATTTCAGTTCGGCGTAGGAT
TCATGCGACTTGAGGACGTGATCTAGGAGATGTCCTGCGATGCTCTGACC
ACCCTCGTTTAGGAAGTAGCCGGGAATAATGGCATCCTGATAGGGACCCC
AAACACCTTGTGCGAAGCATGCCTTCCGGGTGATGCTCATGTGGCAGGTG
GATGTACCGGCAATCA
BS15987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PB | 1320 | CG11594-RB | 521..1320 | 816..17 | 4000 | 100 | Minus |
| CG11594-PA | 1647 | CG11594-RA | 848..1647 | 816..17 | 4000 | 100 | Minus |
| CG11594-PC | 1647 | CG11594-RC | 848..1647 | 816..17 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 1231..2030 | 816..17 | 4000 | 100 | Minus |
| CG11594-RD | 1879 | CG11594-RD | 987..1786 | 816..17 | 4000 | 100 | Minus |
| CG11594-RC | 1944 | CG11594-RC | 1052..1851 | 816..17 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024045 | 461..816 | 1780 | 100 | Plus |
| 3L | 28110227 | 3L | 4023276..4023494 | 167..385 | 1095 | 100 | Plus |
| 3L | 28110227 | 3L | 4023067..4023218 | 17..168 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 4023553..4023628 | 386..461 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:14:48 has no hits.
BS15987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:02 Download gff for
BS15987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PC | 849..1647 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:43 Download gff for
BS15987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 1053..1854 | 10..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:21 Download gff for
BS15987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 1053..1854 | 10..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:21 Download gff for
BS15987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023276..4023494 | 167..385 | 100 | <- | Plus |
| 3L | 4023553..4023627 | 386..460 | 100 | <- | Plus |
| 3L | 4023060..4023216 | 10..166 | 97 | <- | Plus |
| 3L | 4023690..4024044 | 461..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:43 Download gff for
BS15987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023060..4023216 | 10..166 | 97 | <- | Plus |
| arm_3L | 4023276..4023494 | 167..385 | 100 | <- | Plus |
| arm_3L | 4023553..4023627 | 386..460 | 100 | <- | Plus |
| arm_3L | 4023690..4024044 | 461..815 | 100 | | Plus |
BS15987.5prime Sequence
868 bp (796 high quality bases) assembled on 2007-04-16
> BS15987.5prime
GAAGTTATCAGTCGACATGTCATCCGGACCGTTTTTTGTGGGCGTGGACG
TGGGCACGGGCAGTGCGAGGGCGGCCCTGGTCGCCTGCGATGGGCGTGTC
CTGGAGCAGGCGGTGCAGACGATCCAAACGTGGAATCCTGAGCCGGGCTA
CTACAACCAGTCATCCGATAATATATGGCAGTCCATCTGCCAGGTGGTGA
AGAAAGTCATTGGCGGCGTCGATAAGTCAAAAGTCAAGGGCATTGGCTTC
GATGCCACCTGCTCCTTGGTGGTTCTGGGCCCCCAGGGATCGCCGCTGAC
GGTGAGCAAGTCCGGTGAGGCGGAGCAGAACATAATCCTCTGGATGGACC
ATCGTGCCGAGCAGGAAACCCAAGAGATCAATGCCTTCAAGCACTCGCTG
CTGAAATATGTGGGTGGTCAGGTTTCGCTGGAAATGGAGGTTCCCAAATT
GCTGTGGCTGAAGAGGAATCTGTCACAGACTTTTGGAAATATTTGGAGGG
TCTTTGACCTGCCCGACTTTCTGACCTGGCGAGCCACTGGAGTGGACACC
CGATCACTTTGCTCGGTGGTGTGCAAGTGGAACTACGATGCAGCGAATGG
CAGTTGGAACAAGGAGTTCCTGAAGCAGGCGGACTTGGAGGAGTTGACAC
AGAATAACTTCGAGAAATTGGGCAGTGATGTCCAGCCGCCTGGCCGAACG
GTGGGCAAAGGACTCACGGCCAAGGCTGCTGGGGAACTGGGCTTATCCGC
CGGCACTGTGGTGAGCACCTCCCTAATCGATGCCCATGCTGGCGCCTTGG
GAATGTTTGGATGCCGCTCAAAGGAGTCCAAGGGTGCCGACGATGTCCAG
GGTAAAATGGCTCTGATT
BS15987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PA | 1647 | CG11594-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG11594-PC | 1647 | CG11594-RC | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG11594-PB | 1320 | CG11594-RB | 1..525 | 344..868 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 384..1235 | 17..868 | 4260 | 100 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 140..991 | 17..868 | 4260 | 100 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 205..1056 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4024041..4024708 | 868..201 | 3340 | 100 | Minus |
| 3L | 28110227 | 3L | 4024945..4025130 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:29:28 has no hits.
BS15987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:03 Download gff for
BS15987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PC | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:47 Download gff for
BS15987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 202..1056 | 14..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:30 Download gff for
BS15987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 202..1056 | 14..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:30 Download gff for
BS15987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4024041..4024706 | 203..868 | 100 | <- | Minus |
| 3L | 4024945..4025133 | 14..202 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:47 Download gff for
BS15987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4024945..4025133 | 14..202 | 99 | | Minus |
| arm_3L | 4024041..4024706 | 203..868 | 100 | <- | Minus |
BS15987.complete Sequence
1679 bp assembled on 2007-05-07
GenBank Submission: FJ638012
> BS15987.complete
GAAGTTATCAGTCGACATGTCATCCGGACCGTTTTTTGTGGGCGTGGACG
TGGGCACGGGCAGTGCGAGGGCGGCCCTGGTCGCCTGCGATGGGCGTGTC
CTGGAGCAGGCGGTGCAGACGATCCAAACGTGGAATCCTGAGCCGGGCTA
CTACAACCAGTCATCCGATAATATATGGCAGTCCATCTGCCAGGTGGTGA
AGAAAGTCATTGGCGGCGTCGATAAGTCAAAAGTCAAGGGCATTGGCTTC
GATGCCACCTGCTCCTTGGTGGTTCTGGGCCCCCAGGGATCGCCGCTGAC
GGTGAGCAAGTCCGGTGAGGCGGAGCAGAACATAATCCTCTGGATGGACC
ATCGTGCCGAGCAGGAAACCCAAGAGATCAATGCCTTCAAGCACTCGCTG
CTGAAATATGTGGGTGGTCAGGTTTCGCTGGAAATGGAGGTTCCCAAATT
GCTGTGGCTGAAGAGGAATCTGTCACAGACTTTTGGAAATATTTGGAGGG
TCTTTGACCTGCCCGACTTTCTGACCTGGCGAGCCACTGGAGTGGACACC
CGATCACTTTGCTCGGTGGTGTGCAAGTGGAACTACGATGCAGCGAATGG
CAGTTGGAACAAGGAGTTCCTGAAGCAGGCGGACTTGGAGGAGTTGACAC
AGAATAACTTCGAGAAATTGGGCAGTGATGTCCAGCCGCCTGGCCGAACG
GTGGGCAAAGGACTCACGGCCAAGGCTGCTGGGGAACTGGGCTTATCCGC
CGGCACTGTGGTGAGCACCTCCCTAATCGATGCCCATGCTGGCGCCTTGG
GAATGTTTGGATGCCGCTCAAAGGAGTCCAAGGGTGCCGACGATGTCCAG
GGTAAAATGGCTCTGATTGCCGGTACATCCACCTGCCACATGAGCATCAC
CCGGAAGGCATGCTTCGCACAAGGTGTTTGGGGTCCCTATCAGGATGCCA
TTATTCCCGGCTACTTCCTAAACGAGGGTGGTCAGAGCATCGCAGGACAT
CTCCTAGATCACGTCCTCAAGTCGCATGAATCCTACGCCGAACTGAAATC
CCAATTGGGAGAGGATAAGTTTATCTACCAGCATCTTAATAAGTTGCTGC
CGGAACTGGCAGCAGCTCGAGGATTAAGCCAGGTGGGCTGTCTCACCCAG
GATGTCCATGTCTGGCCGGACTTGCATGGCAATCGGTCGCCCATCGCAGA
TCCCACGCTGCGAGGAGTGATTACTGGACTGGACATGACGCGAGGAACTG
AATCTCTGGCCATCAAATACTTGGCGTTCGTCCAAGCTCTGGCTTACGGC
ACACGTCACATTATTGAAAACCTTTACCAGTACGGTAGAGCTCCCTTTCA
AACGCTACTTTTCTGCGGGGGATTGGCCAAGAATCCTCTGTACGTACAAT
GTCATGCGGACATTTGCAATCTGCCCGCACTGATTCCGGATGAACAGGAA
ATGGTTCTGGTGGGCGCTGCTGCCTTGGGAGCCGCTGCCTCCGGCCACTT
CGACAGCTTGGAGAGCGCCTCGAAATCCATGGGTGGCACTGGCCAGCTGG
TGAAGCCGAACGCGGAAACGCTTGAGTTCCACAATCGCAAGTACAAGGTG
TTCCTGCAGCTGCTGGAGAACCAACGACAGTACAGGCGCATTATGCAGGC
AGACACAAAGTGAAAGCTTTCTAGACCAT
BS15987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 1647 | CG11594-PE | 1..1647 | 17..1663 | 8235 | 100 | Plus |
| CG11594-RD | 1647 | CG11594-PD | 1..1647 | 17..1663 | 8235 | 100 | Plus |
| CG11594-RC | 1647 | CG11594-PC | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 384..2030 | 17..1663 | 8235 | 100 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 140..1786 | 17..1663 | 8235 | 100 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 205..1851 | 17..1663 | 8235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024708 | 1219..201 | 5095 | 100 | Minus |
| 3L | 28110227 | 3L | 4023276..4023494 | 1513..1295 | 1095 | 100 | Minus |
| 3L | 28110227 | 3L | 4024945..4025130 | 202..17 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 4023067..4023218 | 1663..1512 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 4023553..4023628 | 1294..1219 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:39 has no hits.
BS15987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:28 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 1..1647 | 17..1663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:14 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 200..1852 | 14..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:37 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 205..1850 | 17..1662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:29 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 200..1852 | 14..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:11 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 205..1850 | 17..1662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:11 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023068..4023216 | 1514..1662 | 100 | <- | Minus |
| 3L | 4023276..4023494 | 1295..1513 | 100 | <- | Minus |
| 3L | 4023553..4023627 | 1220..1294 | 100 | <- | Minus |
| 3L | 4023690..4024706 | 203..1219 | 100 | <- | Minus |
| 3L | 4024945..4025130 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:37 Download gff for
BS15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023068..4023216 | 1514..1662 | 100 | <- | Minus |
| arm_3L | 4023276..4023494 | 1295..1513 | 100 | <- | Minus |
| arm_3L | 4023553..4023627 | 1220..1294 | 100 | <- | Minus |
| arm_3L | 4023690..4024706 | 203..1219 | 100 | <- | Minus |
| arm_3L | 4024945..4025130 | 17..202 | 100 | | Minus |
BS15987.pep Sequence
Translation from 16 to 1662
> BS15987.pep
MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSS
DNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSG
EAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKR
NLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKE
FLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVS
TSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACF
AQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGED
KFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRG
VITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFC
GGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLES
ASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*
BS15987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PE | 548 | CG11594-PE | 1..548 | 1..548 | 2873 | 100 | Plus |
| CG11594-PD | 548 | CG11594-PD | 1..548 | 1..548 | 2873 | 100 | Plus |
| CG11594-PC | 548 | CG11594-PC | 1..548 | 1..548 | 2873 | 100 | Plus |
| CG11594-PA | 548 | CG11594-PA | 1..548 | 1..548 | 2873 | 100 | Plus |
