Clone Sequence Records
BS15991.3prime Sequence
801 bp (801 high quality bases) assembled on 2007-04-16
> BS15991.3prime
ATGGTCTAGAAAGCTTTCAATCCTTGCGCAGCTTATCCAGGCGCGCCTGA
AGATCCGCATCGGCATCGGACATGGGCGATGAGGCACCACTGCCACCGGG
AGCTCCCGGACCACCAGCGCCGCCACCACTAGCTCCACCTCCGCCGGCGG
CTCCACCGCCGCCAACGCCACCAGCGGCCACAGCCTGTGCTTTCTGAGCG
CCAGCGCCGCCGGCTATGGAAAGGGAACCGGAGGCGGAAGGAAGGTCTCC
CAGCTGTTCGCCCAATTGCAGACCCAGTTCGTCCAGCACCTGGGACACAA
CAGCATCCGTCTCCTCCTCGTCGCCCTCGTCCTCCATGGCGTCATCGATG
GCATCGTTGATCATCTCCTCCTTCATGTCCATCATTTCCGACTGTTTCTC
GAAGTCCTGCAGGATCTTCTGGATTTGCGGGAGATTCAGCTGGCGGTTCA
TGTTCTGCATGGCCTTCGTGACACCTTTCATGGCCTGTGCCATTGTGTTC
TGCGACTTGAGCGTCTGAATTTTGAGGGACACCGCCTGGATGTTTGCCTT
CATCAGCATGAACTTCTTGGCATACCGCCGCGTGCGCACCAGATCCTTGG
CCATGATCTTCACGGCATCCATTTGACCCTCCTTGGCCATCTTCTTGATA
TCCGCGATAATCTTCTTCTCCTGCTGCTCCATTTTCATCCGCTCGCGGTC
CAGATCTCGCATCGCTTTGTTGAGCGCCCGCTGATTCTTACGCAGCATCT
CATCGGGGCTGATCTTCTTGCCGAATAGCCAGTCCATGTCGACTGATAAC
T
BS15991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14542-PA | 771 | CG14542-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..867 | 789..17 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053747 | 476..17 | 2300 | 100 | Minus |
3R | 32079331 | 3R | 26052915..26053231 | 789..473 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:39 has no hits.
BS15991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:05 Download gff for
BS15991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:01 Download gff for
BS15991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 86..869 | 13..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:03 Download gff for
BS15991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 86..869 | 13..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:03 Download gff for
BS15991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052906..26053229 | 475..798 | 98 | -> | Minus |
3R | 26053290..26053742 | 22..474 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:01 Download gff for
BS15991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878628..21878951 | 475..798 | 98 | -> | Minus |
arm_3R | 21879012..21879464 | 22..474 | 100 | -> | Minus |
BS15991.5prime Sequence
783 bp (781 high quality bases) assembled on 2007-04-16
> BS15991.5prime
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGA
BS15991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14542-PA | 771 | CG14542-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..863 | 15..783 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053743 | 328..783 | 2280 | 100 | Plus |
3R | 32079331 | 3R | 26052915..26053231 | 15..331 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:25:08 has no hits.
BS15991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:05 Download gff for
BS15991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:59 Download gff for
BS15991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 86..862 | 6..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:45 Download gff for
BS15991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 86..862 | 6..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:45 Download gff for
BS15991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052906..26053229 | 6..329 | 98 | -> | Plus |
3R | 26053290..26053742 | 330..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:59 Download gff for
BS15991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878628..21878951 | 6..329 | 98 | -> | Plus |
arm_3R | 21879012..21879464 | 330..782 | 100 | | Plus |
BS15991.complete Sequence
803 bp assembled on 2007-05-07
GenBank Submission: FJ638014
> BS15991.complete
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATTGAAAGCTTTCTAGAC
CAT
BS15991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 771 | CG14542-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..867 | 15..787 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053747 | 328..787 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 26052915..26053231 | 15..331 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:00:49 has no hits.
BS15991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:26 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:11 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 82..865 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:03 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 97..866 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:26 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 82..865 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:56 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 97..866 | 17..786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:56 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052917..26053229 | 17..329 | 100 | -> | Plus |
3R | 26053290..26053746 | 330..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:03 Download gff for
BS15991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878639..21878951 | 17..329 | 100 | -> | Plus |
arm_3R | 21879012..21879468 | 330..786 | 100 | | Plus |
BS15991.pep Sequence
Translation from 16 to 786
> BS15991.pep
MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM
AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA
QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA
MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA
QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL
DKLRKD*
BS15991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-PA | 256 | CG14542-PA | 1..256 | 1..256 | 1275 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..200 | 4..199 | 349 | 34.7 | Plus |
Chmp1-PB | 203 | CG4108-PB | 6..189 | 15..201 | 237 | 28.3 | Plus |
Chmp1-PA | 203 | CG4108-PA | 6..189 | 15..201 | 237 | 28.3 | Plus |
Vps24-PA | 223 | CG9779-PA | 3..181 | 4..183 | 195 | 25.8 | Plus |