Clone BS15991 Report

Search the DGRC for BS15991

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptVps2-RA
Protein status:BS15991.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15991.3prime Sequence

801 bp (801 high quality bases) assembled on 2007-04-16

> BS15991.3prime
ATGGTCTAGAAAGCTTTCAATCCTTGCGCAGCTTATCCAGGCGCGCCTGA
AGATCCGCATCGGCATCGGACATGGGCGATGAGGCACCACTGCCACCGGG
AGCTCCCGGACCACCAGCGCCGCCACCACTAGCTCCACCTCCGCCGGCGG
CTCCACCGCCGCCAACGCCACCAGCGGCCACAGCCTGTGCTTTCTGAGCG
CCAGCGCCGCCGGCTATGGAAAGGGAACCGGAGGCGGAAGGAAGGTCTCC
CAGCTGTTCGCCCAATTGCAGACCCAGTTCGTCCAGCACCTGGGACACAA
CAGCATCCGTCTCCTCCTCGTCGCCCTCGTCCTCCATGGCGTCATCGATG
GCATCGTTGATCATCTCCTCCTTCATGTCCATCATTTCCGACTGTTTCTC
GAAGTCCTGCAGGATCTTCTGGATTTGCGGGAGATTCAGCTGGCGGTTCA
TGTTCTGCATGGCCTTCGTGACACCTTTCATGGCCTGTGCCATTGTGTTC
TGCGACTTGAGCGTCTGAATTTTGAGGGACACCGCCTGGATGTTTGCCTT
CATCAGCATGAACTTCTTGGCATACCGCCGCGTGCGCACCAGATCCTTGG
CCATGATCTTCACGGCATCCATTTGACCCTCCTTGGCCATCTTCTTGATA
TCCGCGATAATCTTCTTCTCCTGCTGCTCCATTTTCATCCGCTCGCGGTC
CAGATCTCGCATCGCTTTGTTGAGCGCCCGCTGATTCTTACGCAGCATCT
CATCGGGGCTGATCTTCTTGCCGAATAGCCAGTCCATGTCGACTGATAAC
T

BS15991.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14542-PA 771 CG14542-RA 1..771 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..867 789..17 3865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053747 476..17 2300 100 Minus
3R 32079331 3R 26052915..26053231 789..473 1585 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:39 has no hits.

BS15991.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:05 Download gff for BS15991.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:01 Download gff for BS15991.3prime
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 86..869 13..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:03 Download gff for BS15991.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 86..869 13..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:03 Download gff for BS15991.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26052906..26053229 475..798 98 -> Minus
3R 26053290..26053742 22..474 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:01 Download gff for BS15991.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878628..21878951 475..798 98 -> Minus
arm_3R 21879012..21879464 22..474 100 -> Minus

BS15991.5prime Sequence

783 bp (781 high quality bases) assembled on 2007-04-16

> BS15991.5prime
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGA

BS15991.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14542-PA 771 CG14542-RA 1..767 17..783 3835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..863 15..783 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053743 328..783 2280 100 Plus
3R 32079331 3R 26052915..26053231 15..331 1585 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:25:08 has no hits.

BS15991.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:05 Download gff for BS15991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:59 Download gff for BS15991.5prime
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 86..862 6..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:45 Download gff for BS15991.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 86..862 6..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:45 Download gff for BS15991.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26052906..26053229 6..329 98 -> Plus
3R 26053290..26053742 330..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:59 Download gff for BS15991.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878628..21878951 6..329 98 -> Plus
arm_3R 21879012..21879464 330..782 100   Plus

BS15991.complete Sequence

803 bp assembled on 2007-05-07

GenBank Submission: FJ638014

> BS15991.complete
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATTGAAAGCTTTCTAGAC
CAT

BS15991.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 771 CG14542-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..867 15..787 3865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053747 328..787 2300 100 Plus
3R 32079331 3R 26052915..26053231 15..331 1585 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:00:49 has no hits.

BS15991.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:26 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:11 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 82..865 6..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:03 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 97..866 17..786 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:26 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 82..865 6..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:56 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 97..866 17..786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:56 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26052917..26053229 17..329 100 -> Plus
3R 26053290..26053746 330..786 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:03 Download gff for BS15991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878639..21878951 17..329 100 -> Plus
arm_3R 21879012..21879468 330..786 100   Plus

BS15991.pep Sequence

Translation from 16 to 786

> BS15991.pep
MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM
AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA
QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA
MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA
QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL
DKLRKD*

BS15991.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-PA 256 CG14542-PA 1..256 1..256 1275 100 Plus
CHMP2B-PA 212 CG4618-PA 5..200 4..199 349 34.7 Plus
Chmp1-PB 203 CG4108-PB 6..189 15..201 237 28.3 Plus
Chmp1-PA 203 CG4108-PA 6..189 15..201 237 28.3 Plus
Vps24-PA 223 CG9779-PA 3..181 4..183 195 25.8 Plus