Clone Sequence Records
BS15992.3prime Sequence
591 bp (591 high quality bases) assembled on 2007-04-16
> BS15992.3prime
ATGGTCTAGAAAGCTTCTAGAAATGCTTTCGCATGTGGGCGGATACCAAA
AAGGGCGCCAGAAGTGAGCAGATCGAGACCAAGAAGCTGACCAGGCCCTG
AAGATTAGCTCCACTGCAGATGTCGTGCAGGATGTCCTCCACATATCCGT
TGTCGTTGTCGCAGAGACACAGCTTGGTCTTGCTGGACATGAACTTGGCC
ACTCCGATGGTGCGGTTGCTGTTCTCGTACTGGCACACCATTCCATCCTC
GCAGTCGTTGTTGCTGTTGCACTTGTGACGCAGGCCTTTCAGGACATCTG
GACAGCTGCCAGCCGAAGGAGGCGAGTCGTCGCCGCATAGGCAACGCAGC
TTGTAGTCATTGGGATCCTTGACGCAGCTGGTGCGATCTATCGCCGTGCA
ATCATCGTGGGCACTGCACTCTCGTCCTTTAACAATTGGGACGTGCGTGG
GAGGCGGCTGATTGTTGGTCTTGCCAAAAGTGGTCAGAGCCGTGGAGCTG
ACCCCGAAGAGGATGATGAAGATGCCGAAGAGCATGGTCAGACTGCCGCA
TTGTGTGAAGCGCTTCAGGGGCTGCATGTCGACTGATAACT
BS15992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13636-PA | 561 | CG13636-RA | 1..561 | 577..17 | 2805 | 100 | Minus |
CG13636-PB | 225 | CG13636-RB | 1..225 | 241..17 | 1125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..956 | 577..14 | 2820 | 100 | Minus |
sosie-RC | 635 | CG13636-RC | 86..505 | 433..14 | 2100 | 100 | Minus |
sosie-RB | 1528 | CG13636-RB | 328..746 | 432..14 | 2095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 287..109 | 895 | 100 | Minus |
3R | 32079331 | 3R | 24838050..24838198 | 433..285 | 745 | 100 | Minus |
3R | 32079331 | 3R | 24837073..24837221 | 577..429 | 730 | 99.3 | Minus |
3R | 32079331 | 3R | 24839610..24839706 | 110..14 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:02:31 has no hits.
BS15992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:05 Download gff for
BS15992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:51 Download gff for
BS15992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..962 | 9..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:24 Download gff for
BS15992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..962 | 9..577 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:24 Download gff for
BS15992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24837073..24837217 | 433..577 | 100 | -> | Minus |
3R | 24838051..24838197 | 286..432 | 100 | -> | Minus |
3R | 24839313..24839489 | 109..285 | 100 | -> | Minus |
3R | 24839612..24839712 | 9..108 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:51 Download gff for
BS15992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20662795..20662939 | 433..577 | 100 | -> | Minus |
arm_3R | 20663773..20663919 | 286..432 | 100 | -> | Minus |
arm_3R | 20665035..20665211 | 109..285 | 100 | -> | Minus |
arm_3R | 20665334..20665434 | 9..108 | 97 | | Minus |
BS15992.5prime Sequence
591 bp (591 high quality bases) assembled on 2007-04-16
> BS15992.5prime
GAAGTTATCAGTCGACATGCAGCCCCTGAAGCGCTTCACACAATGCGGCA
GTCTGACCATGCTCTTCGGCATCTTCATCATCCTCTTCGGGGTCAGCTCC
ACGGCTCTGACCACTTTTGGCAAGACCAACAATCAGCCGCCTCCCACGCA
CGTCCCAATTGTTAAAGGACGAGAGTGCAGTGCCCACGATGATTGCACGG
CGATAGATCGCACCAGCTGCGTCAAGGATCCCAATGACTACAAGCTGCGT
TGCCTATGCGGCGACGACTCGCCTCCTTCGGCTGGCAGCTGTCCAGATGT
CCTGAAAGGCCTGCGTCACAAGTGCAACAGCAACAACGACTGCGAGGATG
GAATGGTGTGCCAGTACGAGAACAGCAACCGCACCATCGGAGTGGCCAAG
TTCATGTCCAGCAAGACCAAGCTGTGTCTCTGCGACAACGACAACGGATA
TGTGGAGGACATCCTGCACGACATCTGCAGTGGAGCTAATCTTCAGGGCC
TGGTCAGCTTCTTGGTCTCGATCTGCTCACTTCTGGCGCCCTTTTTGGTA
TCCGCCCACATGCGAAAGCATTTCTAGAAGCTTTCTAGACC
BS15992.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13636-PA | 561 | CG13636-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
CG13636-PB | 225 | CG13636-RB | 1..225 | 353..577 | 1125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..956 | 17..580 | 2820 | 100 | Plus |
sosie-RC | 635 | CG13636-RC | 86..505 | 161..580 | 2100 | 100 | Plus |
sosie-RB | 1528 | CG13636-RB | 328..746 | 162..580 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 307..485 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24838050..24838198 | 161..309 | 745 | 100 | Plus |
3R | 32079331 | 3R | 24837073..24837221 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 24839610..24839706 | 484..580 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:15 has no hits.
BS15992.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:06 Download gff for
BS15992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:01 Download gff for
BS15992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..962 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:23 Download gff for
BS15992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..962 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:23 Download gff for
BS15992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24837073..24837217 | 17..161 | 100 | -> | Plus |
3R | 24838051..24838197 | 162..308 | 100 | -> | Plus |
3R | 24839313..24839489 | 309..485 | 100 | -> | Plus |
3R | 24839612..24839712 | 486..585 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:01 Download gff for
BS15992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20662795..20662939 | 17..161 | 100 | -> | Plus |
arm_3R | 20663773..20663919 | 162..308 | 100 | -> | Plus |
arm_3R | 20665035..20665211 | 309..485 | 100 | -> | Plus |
arm_3R | 20665334..20665434 | 486..585 | 97 | | Plus |
BS15992.complete Sequence
593 bp assembled on 2007-05-07
GenBank Submission: FJ638015
> BS15992.complete
GAAGTTATCAGTCGACATGCAGCCCCTGAAGCGCTTCACACAATGCGGCA
GTCTGACCATGCTCTTCGGCATCTTCATCATCCTCTTCGGGGTCAGCTCC
ACGGCTCTGACCACTTTTGGCAAGACCAACAATCAGCCGCCTCCCACGCA
CGTCCCAATTGTTAAAGGACGAGAGTGCAGTGCCCACGATGATTGCACGG
CGATAGATCGCACCAGCTGCGTCAAGGATCCCAATGACTACAAGCTGCGT
TGCCTATGCGGCGACGACTCGCCTCCTTCGGCTGGCAGCTGTCCAGATGT
CCTGAAAGGCCTGCGTCACAAGTGCAACAGCAACAACGACTGCGAGGATG
GAATGGTGTGCCAGTACGAGAACAGCAACCGCACCATCGGAGTGGCCAAG
TTCATGTCCAGCAAGACCAAGCTGTGTCTCTGCGACAACGACAACGGATA
TGTGGAGGACATCCTGCACGACATCTGCAGTGGAGCTAATCTTCAGGGCC
TGGTCAGCTTCTTGGTCTCGATCTGCTCACTTCTGGCGCCCTTTTTGGTA
TCCGCCCACATGCGAAAGCATTTCTAGAAGCTTTCTAGACCAT
BS15992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 561 | CG13636-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
sosie-RC | 225 | CG13636-PC | 1..225 | 353..577 | 1125 | 100 | Plus |
sosie-RB | 225 | CG13636-PB | 1..225 | 353..577 | 1125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..956 | 17..580 | 2820 | 100 | Plus |
sosie-RC | 635 | CG13636-RC | 86..505 | 161..580 | 2100 | 100 | Plus |
sosie-RB | 1528 | CG13636-RB | 328..746 | 162..580 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 307..485 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24838050..24838198 | 161..309 | 745 | 100 | Plus |
3R | 32079331 | 3R | 24837073..24837221 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 24839610..24839706 | 484..580 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:43:30 has no hits.
BS15992.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:47 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:01 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 394..963 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:23 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..953 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:47 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 394..963 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:55 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..953 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:55 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24837073..24837217 | 17..161 | 100 | -> | Plus |
3R | 24838051..24838197 | 162..308 | 100 | -> | Plus |
3R | 24839313..24839489 | 309..485 | 100 | -> | Plus |
3R | 24839612..24839703 | 486..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:23 Download gff for
BS15992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20665334..20665425 | 486..577 | 100 | | Plus |
arm_3R | 20662795..20662939 | 17..161 | 100 | -> | Plus |
arm_3R | 20663773..20663919 | 162..308 | 100 | -> | Plus |
arm_3R | 20665035..20665211 | 309..485 | 100 | -> | Plus |
BS15992.pep Sequence
Translation from 16 to 576
> BS15992.pep
MQPLKRFTQCGSLTMLFGIFIILFGVSSTALTTFGKTNNQPPPTHVPIVK
GRECSAHDDCTAIDRTSCVKDPNDYKLRCLCGDDSPPSAGSCPDVLKGLR
HKCNSNNDCEDGMVCQYENSNRTIGVAKFMSSKTKLCLCDNDNGYVEDIL
HDICSGANLQGLVSFLVSICSLLAPFLVSAHMRKHF*
BS15992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-PA | 186 | CG13636-PA | 1..186 | 1..186 | 1014 | 100 | Plus |
sosie-PC | 74 | CG13636-PC | 1..74 | 113..186 | 391 | 100 | Plus |
sosie-PB | 74 | CG13636-PB | 1..74 | 113..186 | 391 | 100 | Plus |