Clone Sequence Records
BS15994.3prime Sequence
549 bp (549 high quality bases) assembled on 2007-04-16
> BS15994.3prime
ATGGTCTAGAAAGCTTTTAATGATTGAGCAAGGAGAATTCATATTTCATT
TTCAGGATGCATACCCCTTCAAGATTCAGTGAACCAAACATGCTGGCTAT
GTCGTTCTCCGAGGCGGGAGCAGCCAGGTTCTCGGAGCCCTCTTGCAGAC
CCTTGAGAGCCTGGGAAATGCTATCAGAATACTTGGAGACATCCTCGTCG
GTGGCCGAATTTTCGCCGCTCAAGGTGAGCGCTGCCGCTTCGGCCATCTT
TTTGAAACCGGCCATGATCTGGTCGGGATCCTGGGGCAGCGGCGGAATAT
CGCCACTGGGCGTGTCCGGACCTCCGAAGAGCGTGTTCATGCGATCGGCC
AGCACCTTGGCCTGCTCAATGAAAAACGCATCTGGATCCTCGGAGCCCTC
AGGTCCAGCGTTGGTCGCCACATCCGATGATGCGGACGGCTCCTTTTGGT
CACCGGCACCACTTTTATCGAAATCCTGGAGAGCACTGTCCAGCAAGTCG
TTTAATTCATCGCCATTCTTCTTTTCTTCGGACATGTCGACTGATAACT
BS15994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5325-PB | 519 | CG5325-RB | 1..519 | 535..17 | 2595 | 100 | Minus |
CG5325-PA | 879 | CG5325-RA | 1..472 | 535..64 | 2360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex19-RC | 1596 | CG5325-RC | 480..951 | 535..64 | 2360 | 100 | Minus |
Pex19-RA | 1217 | CG5325-RA | 101..572 | 535..64 | 2360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12094173..12094530 | 373..16 | 1775 | 99.7 | Minus |
2L | 23513712 | 2L | 12093994..12094111 | 486..369 | 590 | 100 | Minus |
2L | 23513712 | 2L | 12093862..12093913 | 535..484 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:37:17 has no hits.
BS15994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:07 Download gff for
BS15994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5325-PB | 1..519 | 17..535 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:21 Download gff for
BS15994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 60..535 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:21 Download gff for
BS15994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 60..535 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:21 Download gff for
BS15994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12093862..12093910 | 487..535 | 100 | -> | Minus |
2L | 12093994..12094111 | 369..486 | 100 | -> | Minus |
2L | 12094178..12094535 | 9..368 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:21 Download gff for
BS15994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12093862..12093910 | 487..535 | 100 | -> | Minus |
arm_2L | 12093994..12094111 | 369..486 | 100 | -> | Minus |
arm_2L | 12094178..12094535 | 9..368 | 98 | | Minus |
BS15994.5prime Sequence
549 bp (549 high quality bases) assembled on 2007-04-16
> BS15994.5prime
GAAGTTATCAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAA
ACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGT
GACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGGACC
TGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGC
TGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGC
GATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTTCAA
AAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCA
CCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAG
GGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGA
CATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGA
AAATGAAATATGAATTCTCCTTGCTCAATCATTAAAAGCTTTCTAGACC
BS15994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5325-PB | 519 | CG5325-RB | 1..519 | 17..535 | 2595 | 100 | Plus |
CG5325-PA | 879 | CG5325-RA | 1..472 | 17..488 | 2360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex19-RC | 1596 | CG5325-RC | 480..951 | 17..488 | 2360 | 100 | Plus |
Pex19-RA | 1217 | CG5325-RA | 101..572 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12094173..12094530 | 179..536 | 1775 | 99.7 | Plus |
2L | 23513712 | 2L | 12093994..12094111 | 66..183 | 590 | 100 | Plus |
2L | 23513712 | 2L | 12093862..12093913 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:06:02 has no hits.
BS15994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:07 Download gff for
BS15994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5325-PB | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:06 Download gff for
BS15994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:55 Download gff for
BS15994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:55 Download gff for
BS15994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
2L | 12093994..12094111 | 66..183 | 100 | -> | Plus |
2L | 12094178..12094535 | 184..543 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:06 Download gff for
BS15994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
arm_2L | 12093994..12094111 | 66..183 | 100 | -> | Plus |
arm_2L | 12094178..12094535 | 184..543 | 98 | | Plus |
BS15994.complete Sequence
551 bp assembled on 2007-05-07
GenBank Submission: FJ638873
> BS15994.complete
GAAGTTATCAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAA
ACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGT
GACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGGACC
TGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGC
TGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGC
GATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTTCAA
AAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCA
CCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAG
GGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGA
CATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGA
AAATGAAATATGAATTCTCCTTGCTCAATCATTAAAAGCTTTCTAGACCA
T
BS15994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex19-RC | 879 | CG5325-PC | 1..472 | 17..488 | 2360 | 100 | Plus |
Pex19-RA | 879 | CG5325-PA | 1..472 | 17..488 | 2360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex19-RC | 1596 | CG5325-RC | 480..951 | 17..488 | 2360 | 100 | Plus |
Pex19-RA | 1217 | CG5325-RA | 101..572 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12094173..12094530 | 179..536 | 1775 | 99.7 | Plus |
2L | 23513712 | 2L | 12093994..12094111 | 66..183 | 590 | 100 | Plus |
2L | 23513712 | 2L | 12093862..12093913 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:58:42 has no hits.
BS15994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:54 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5325-RB | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:37 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5325-RB | 92..616 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:15 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:54 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5325-RB | 92..616 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:36 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex19-RA | 101..575 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:36 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
2L | 12093994..12094111 | 66..183 | 100 | -> | Plus |
2L | 12094178..12094527 | 184..533 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:15 Download gff for
BS15994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
arm_2L | 12093994..12094111 | 66..183 | 100 | -> | Plus |
arm_2L | 12094178..12094527 | 184..533 | 100 | | Plus |
BS15994.pep Sequence
Translation from 16 to 534
> BS15994.pep
MSEEKKNGDELNDLLDSALQDFDKSGAGDQKEPSASSDVATNAGPEGSED
PDAFFIEQAKVLADRMNTLFGGPDTPSGDIPPLPQDPDQIMAGFKKMAEA
AALTLSGENSATDEDVSKYSDSISQALKGLQEGSENLAAPASENDIASMF
GSLNLEGVCILKMKYEFSLLNH*
BS15994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex19-PC | 292 | CG5325-PC | 1..157 | 1..157 | 794 | 100 | Plus |
Pex19-PA | 292 | CG5325-PA | 1..157 | 1..157 | 794 | 100 | Plus |