Clone BS15994 Report

Search the DGRC for BS15994

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG5325-RB
Protein status:BS15994.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15994.3prime Sequence

549 bp (549 high quality bases) assembled on 2007-04-16

> BS15994.3prime
ATGGTCTAGAAAGCTTTTAATGATTGAGCAAGGAGAATTCATATTTCATT
TTCAGGATGCATACCCCTTCAAGATTCAGTGAACCAAACATGCTGGCTAT
GTCGTTCTCCGAGGCGGGAGCAGCCAGGTTCTCGGAGCCCTCTTGCAGAC
CCTTGAGAGCCTGGGAAATGCTATCAGAATACTTGGAGACATCCTCGTCG
GTGGCCGAATTTTCGCCGCTCAAGGTGAGCGCTGCCGCTTCGGCCATCTT
TTTGAAACCGGCCATGATCTGGTCGGGATCCTGGGGCAGCGGCGGAATAT
CGCCACTGGGCGTGTCCGGACCTCCGAAGAGCGTGTTCATGCGATCGGCC
AGCACCTTGGCCTGCTCAATGAAAAACGCATCTGGATCCTCGGAGCCCTC
AGGTCCAGCGTTGGTCGCCACATCCGATGATGCGGACGGCTCCTTTTGGT
CACCGGCACCACTTTTATCGAAATCCTGGAGAGCACTGTCCAGCAAGTCG
TTTAATTCATCGCCATTCTTCTTTTCTTCGGACATGTCGACTGATAACT

BS15994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5325-PB 519 CG5325-RB 1..519 535..17 2595 100 Minus
CG5325-PA 879 CG5325-RA 1..472 535..64 2360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-RC 1596 CG5325-RC 480..951 535..64 2360 100 Minus
Pex19-RA 1217 CG5325-RA 101..572 535..64 2360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12094173..12094530 373..16 1775 99.7 Minus
2L 23513712 2L 12093994..12094111 486..369 590 100 Minus
2L 23513712 2L 12093862..12093913 535..484 260 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:37:17 has no hits.

BS15994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:07 Download gff for BS15994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5325-PB 1..519 17..535 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:21 Download gff for BS15994.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 60..535 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:21 Download gff for BS15994.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 60..535 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:21 Download gff for BS15994.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12093862..12093910 487..535 100 -> Minus
2L 12093994..12094111 369..486 100 -> Minus
2L 12094178..12094535 9..368 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:21 Download gff for BS15994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12093862..12093910 487..535 100 -> Minus
arm_2L 12093994..12094111 369..486 100 -> Minus
arm_2L 12094178..12094535 9..368 98   Minus

BS15994.5prime Sequence

549 bp (549 high quality bases) assembled on 2007-04-16

> BS15994.5prime
GAAGTTATCAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAA
ACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGT
GACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGGACC
TGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGC
TGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGC
GATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTTCAA
AAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCA
CCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAG
GGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGA
CATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGA
AAATGAAATATGAATTCTCCTTGCTCAATCATTAAAAGCTTTCTAGACC

BS15994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5325-PB 519 CG5325-RB 1..519 17..535 2595 100 Plus
CG5325-PA 879 CG5325-RA 1..472 17..488 2360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-RC 1596 CG5325-RC 480..951 17..488 2360 100 Plus
Pex19-RA 1217 CG5325-RA 101..572 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12094173..12094530 179..536 1775 99.7 Plus
2L 23513712 2L 12093994..12094111 66..183 590 100 Plus
2L 23513712 2L 12093862..12093913 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:02 has no hits.

BS15994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:07 Download gff for BS15994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5325-PB 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:06 Download gff for BS15994.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 17..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:55 Download gff for BS15994.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:55 Download gff for BS15994.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12093862..12093910 17..65 100 -> Plus
2L 12093994..12094111 66..183 100 -> Plus
2L 12094178..12094535 184..543 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:06 Download gff for BS15994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12093862..12093910 17..65 100 -> Plus
arm_2L 12093994..12094111 66..183 100 -> Plus
arm_2L 12094178..12094535 184..543 98   Plus

BS15994.complete Sequence

551 bp assembled on 2007-05-07

GenBank Submission: FJ638873

> BS15994.complete
GAAGTTATCAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAA
ACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGT
GACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGGACC
TGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGC
TGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGC
GATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTTCAA
AAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCA
CCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAG
GGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGA
CATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGA
AAATGAAATATGAATTCTCCTTGCTCAATCATTAAAAGCTTTCTAGACCA
T

BS15994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-RC 879 CG5325-PC 1..472 17..488 2360 100 Plus
Pex19-RA 879 CG5325-PA 1..472 17..488 2360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-RC 1596 CG5325-RC 480..951 17..488 2360 100 Plus
Pex19-RA 1217 CG5325-RA 101..572 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12094173..12094530 179..536 1775 99.7 Plus
2L 23513712 2L 12093994..12094111 66..183 590 100 Plus
2L 23513712 2L 12093862..12093913 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:58:42 has no hits.

BS15994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:54 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:37 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 92..616 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:15 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:54 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 92..616 17..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:36 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 101..575 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:36 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12093862..12093910 17..65 100 -> Plus
2L 12093994..12094111 66..183 100 -> Plus
2L 12094178..12094527 184..533 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:15 Download gff for BS15994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12093862..12093910 17..65 100 -> Plus
arm_2L 12093994..12094111 66..183 100 -> Plus
arm_2L 12094178..12094527 184..533 100   Plus

BS15994.pep Sequence

Translation from 16 to 534

> BS15994.pep
MSEEKKNGDELNDLLDSALQDFDKSGAGDQKEPSASSDVATNAGPEGSED
PDAFFIEQAKVLADRMNTLFGGPDTPSGDIPPLPQDPDQIMAGFKKMAEA
AALTLSGENSATDEDVSKYSDSISQALKGLQEGSENLAAPASENDIASMF
GSLNLEGVCILKMKYEFSLLNH*

BS15994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-PC 292 CG5325-PC 1..157 1..157 794 100 Plus
Pex19-PA 292 CG5325-PA 1..157 1..157 794 100 Plus