Clone BS16003 Report

Search the DGRC for BS16003

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG8629-RA
Protein status:BS16003.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16003.5prime Sequence

285 bp (285 high quality bases) assembled on 2007-04-16

> BS16003.5prime
GAAGTTATCAGTCGACATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCA
AGAACTTCTCCAAGAAGCCCACCGACTCCGAGTTCCTGGAGTTCTACGGT
CTCTTCAAGCAGGCTACCGTTGGTGATGTGAACATCGACAAGCCCGGCAT
TCTGGATCTCAAGAAGAAGGCCATGTACGAGGCCTGGAACGCCCACAAGG
GTCTCTCCAAGGATGCCGCCAAGGAGGCCTACGTGAAGGTGTACGAGAAG
TATGCCCCCAAGTACGCCTAAAAGCTTTCTAGACC

BS16003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-PA 255 CG8629-RA 1..255 17..271 1275 100 Plus
CG8628-PA 255 CG8628-RA 13..255 29..271 565 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-RA 352 CG8629-RA 36..290 17..271 1275 100 Plus
CG8628-RA 429 CG8628-RA 71..313 29..271 825 89.3 Plus
CG8628-RB 408 CG8628-RB 50..292 29..271 825 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7127975..7128229 271..17 1275 100 Minus
3L 28110227 3L 7131147..7131389 29..271 825 89.3 Plus
Blast to na_te.dros performed on 2015-02-12 10:13:43 has no hits.

BS16003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:08 Download gff for BS16003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-PA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:05 Download gff for BS16003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..293 17..275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:13 Download gff for BS16003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..293 17..275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:13 Download gff for BS16003.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7127972..7128229 17..275 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:05 Download gff for BS16003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7121072..7121329 17..275 99   Minus

BS16003.3prime Sequence

285 bp (285 high quality bases) assembled on 2007-04-16

> BS16003.3prime
ATGGTCTAGAAAGCTTTTAGGCGTACTTGGGGGCATACTTCTCGTACACC
TTCACGTAGGCCTCCTTGGCGGCATCCTTGGAGAGACCCTTGTGGGCGTT
CCAGGCCTCGTACATGGCCTTCTTCTTGAGATCCAGAATGCCGGGCTTGT
CGATGTTCACATCACCAACGGTAGCCTGCTTGAAGAGACCGTAGAACTCC
AGGAACTCGGAGTCGGTGGGCTTCTTGGAGAAGTTCTTGGCGAGTTCGGC
GGCTTCCTCAAAACTGACCATGTCGACTGATAACT

BS16003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-PA 255 CG8629-RA 1..255 271..17 1275 100 Minus
CG8628-PA 255 CG8628-RA 13..255 259..17 565 89.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-RA 352 CG8629-RA 36..290 271..17 1275 100 Minus
CG8628-RA 429 CG8628-RA 71..313 259..17 825 89.3 Minus
CG8628-RB 408 CG8628-RB 50..292 259..17 825 89.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7127975..7128229 17..271 1275 100 Plus
3L 28110227 3L 7131147..7131389 259..17 825 89.3 Minus
Blast to na_te.dros performed on 2015-02-13 06:25:27 has no hits.

BS16003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:07 Download gff for BS16003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-PA 1..255 17..271 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:05 Download gff for BS16003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..293 13..271 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:33:28 Download gff for BS16003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..293 13..271 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:33:28 Download gff for BS16003.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7127972..7128229 13..271 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:05 Download gff for BS16003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7121072..7121329 13..271 99   Plus

BS16003.complete Sequence

287 bp assembled on 2007-05-07

GenBank Submission: FJ638016

> BS16003.complete
GAAGTTATCAGTCGACATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCA
AGAACTTCTCCAAGAAGCCCACCGACTCCGAGTTCCTGGAGTTCTACGGT
CTCTTCAAGCAGGCTACCGTTGGTGATGTGAACATCGACAAGCCCGGCAT
TCTGGATCTCAAGAAGAAGGCCATGTACGAGGCCTGGAACGCCCACAAGG
GTCTCTCCAAGGATGCCGCCAAGGAGGCCTACGTGAAGGTGTACGAGAAG
TATGCCCCCAAGTACGCCTAAAAGCTTTCTAGACCAT

BS16003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-RA 255 CG8629-PA 1..255 17..271 1275 100 Plus
CG8628-RA 255 CG8628-PA 13..255 29..271 825 89.3 Plus
CG8628-RB 255 CG8628-PB 13..255 29..271 825 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-RA 352 CG8629-RA 36..290 17..271 1275 100 Plus
CG8628-RA 429 CG8628-RA 71..313 29..271 825 89.3 Plus
CG8628-RB 408 CG8628-RB 50..292 29..271 825 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7127975..7128229 271..17 1275 100 Minus
3L 28110227 3L 7131147..7131389 29..271 825 89.3 Plus
Blast to na_te.dros performed on 2014-11-26 21:58:08 has no hits.

BS16003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:37 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:38 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 32..289 17..275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:22 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..288 17..269 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:37 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 32..289 17..275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:16 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
CG8629-RA 36..288 17..269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:16 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7127977..7128229 17..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:22 Download gff for BS16003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7121077..7121329 17..269 100   Minus

BS16003.pep Sequence

Translation from 16 to 270

> BS16003.pep
MVSFEEAAELAKNFSKKPTDSEFLEFYGLFKQATVGDVNIDKPGILDLKK
KAMYEAWNAHKGLSKDAAKEAYVKVYEKYAPKYA*

BS16003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8629-PA 84 CG8629-PA 1..84 1..84 435 100 Plus
CG8628-PA 84 CG8628-PA 1..84 1..84 366 83.3 Plus
CG8628-PB 84 CG8628-PB 1..84 1..84 366 83.3 Plus
CG15829-PB 82 CG15829-PB 1..81 1..83 240 56.6 Plus
CG15829-PA 82 CG15829-PA 1..81 1..83 240 56.6 Plus