Clone BS16004 Report

Search the DGRC for BS16004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG16712-RA
Protein status:BS16004.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16004.3prime Sequence

279 bp (279 high quality bases) assembled on 2007-04-16

> BS16004.3prime
ATGGTCTAGAAAGCTTTTATTCCTTGCACTTTTGTTCGCAGAGCTCCTGG
GTTCCAAATCGGTTCTCATTGCCGCCGCATCCGCCGTAGATGAACTTTTC
ACACGAATTGGTTTCGGGATGATAACTGAAGCTGGGTATAAAAGCGGCAC
ACTTGATGAGACCATTGCCATCAATACCAGCGGGCAGTCCACAGATAGGA
TCCTTGAGGCCGAGGGCCACAGCCACCAGGGCGAACATCAAACAGACGGC
AGCAATGAATTTCATGTCGACTGATAACT

BS16004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PA 249 CG16712-RA 1..249 265..17 1245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..310 265..16 1250 100 Minus
CG16712-RA 359 CG16712-RA 61..310 265..16 1250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696289..3696471 16..198 915 100 Plus
2L 23513712 2L 3696532..3696598 199..265 335 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:09:03 has no hits.

BS16004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:08 Download gff for BS16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-PA 1..249 17..265 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:18 Download gff for BS16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 10..275 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:34:14 Download gff for BS16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 10..275 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:34:14 Download gff for BS16004.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3696290..3696471 17..198 100 <- Plus
2L 3696532..3696604 199..275 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:18 Download gff for BS16004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696290..3696471 17..198 100 <- Plus
arm_2L 3696532..3696604 199..275 94   Plus

BS16004.5prime Sequence

279 bp (279 high quality bases) assembled on 2007-04-16

> BS16004.5prime
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAATAAAAGCTTTCTAGACC

BS16004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PA 249 CG16712-RA 1..249 17..265 1245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..310 17..266 1250 100 Plus
CG16712-RA 359 CG16712-RA 61..310 17..266 1250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696289..3696471 266..84 915 100 Minus
2L 23513712 2L 3696532..3696598 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:25:37 has no hits.

BS16004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:09 Download gff for BS16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-PA 1..249 17..265 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:10 Download gff for BS16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 7..272 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:33:46 Download gff for BS16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 7..272 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:33:46 Download gff for BS16004.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3696290..3696471 84..265 100 <- Minus
2L 3696532..3696604 7..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:10 Download gff for BS16004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696290..3696471 84..265 100 <- Minus
arm_2L 3696532..3696604 7..83 94   Minus

BS16004.complete Sequence

281 bp assembled on 2007-05-07

GenBank Submission: FJ638017

> BS16004.complete
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAATAAAAGCTTTCTAGACCAT

BS16004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 249 CG16712-PB 1..249 17..265 1245 100 Plus
CG16712-RA 249 CG16712-PA 1..249 17..265 1245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..310 17..266 1250 100 Plus
CG16712-RA 359 CG16712-RA 61..310 17..266 1250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696289..3696471 266..84 915 100 Minus
2L 23513712 2L 3696532..3696598 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:58 has no hits.

BS16004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:51 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 1..249 17..265 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:14 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 58..316 7..272 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:42 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 61..307 17..263 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:51 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 58..316 7..272 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:31 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 61..307 17..263 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:31 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3696292..3696471 84..263 100 <- Minus
2L 3696532..3696598 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:42 Download gff for BS16004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696292..3696471 84..263 100 <- Minus
arm_2L 3696532..3696598 17..83 100   Minus

BS16004.pep Sequence

Translation from 16 to 264

> BS16004.pep
MKFIAAVCLMFALVAVALGLKDPICGLPAGIDGNGLIKCAAFIPSFSYHP
ETNSCEKFIYGGCGGNENRFGTQELCEQKCKE*

BS16004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PB 82 CG16712-PB 1..82 1..82 448 100 Plus
CG16712-PA 82 CG16712-PA 1..82 1..82 448 100 Plus
CG16713-PA 82 CG16713-PA 1..80 1..80 253 56.2 Plus
CG43165-PA 95 CG43165-PA 1..81 1..81 244 53.1 Plus
Acp24A4-PC 78 CG31779-PC 1..78 1..82 184 46.3 Plus