Clone Sequence Records
BS16004.3prime Sequence
279 bp (279 high quality bases) assembled on 2007-04-16
> BS16004.3prime
ATGGTCTAGAAAGCTTTTATTCCTTGCACTTTTGTTCGCAGAGCTCCTGG
GTTCCAAATCGGTTCTCATTGCCGCCGCATCCGCCGTAGATGAACTTTTC
ACACGAATTGGTTTCGGGATGATAACTGAAGCTGGGTATAAAAGCGGCAC
ACTTGATGAGACCATTGCCATCAATACCAGCGGGCAGTCCACAGATAGGA
TCCTTGAGGCCGAGGGCCACAGCCACCAGGGCGAACATCAAACAGACGGC
AGCAATGAATTTCATGTCGACTGATAACT
BS16004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PA | 249 | CG16712-RA | 1..249 | 265..17 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..310 | 265..16 | 1250 | 100 | Minus |
CG16712-RA | 359 | CG16712-RA | 61..310 | 265..16 | 1250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696289..3696471 | 16..198 | 915 | 100 | Plus |
2L | 23513712 | 2L | 3696532..3696598 | 199..265 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:09:03 has no hits.
BS16004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:08 Download gff for
BS16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-PA | 1..249 | 17..265 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:18 Download gff for
BS16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 10..275 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:34:14 Download gff for
BS16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 10..275 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:34:14 Download gff for
BS16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696290..3696471 | 17..198 | 100 | <- | Plus |
2L | 3696532..3696604 | 199..275 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:18 Download gff for
BS16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696290..3696471 | 17..198 | 100 | <- | Plus |
arm_2L | 3696532..3696604 | 199..275 | 94 | | Plus |
BS16004.5prime Sequence
279 bp (279 high quality bases) assembled on 2007-04-16
> BS16004.5prime
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAATAAAAGCTTTCTAGACC
BS16004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PA | 249 | CG16712-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..310 | 17..266 | 1250 | 100 | Plus |
CG16712-RA | 359 | CG16712-RA | 61..310 | 17..266 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696289..3696471 | 266..84 | 915 | 100 | Minus |
2L | 23513712 | 2L | 3696532..3696598 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:25:37 has no hits.
BS16004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:09 Download gff for
BS16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-PA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:10 Download gff for
BS16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 7..272 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:33:46 Download gff for
BS16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 7..272 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:33:46 Download gff for
BS16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696290..3696471 | 84..265 | 100 | <- | Minus |
2L | 3696532..3696604 | 7..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:10 Download gff for
BS16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696290..3696471 | 84..265 | 100 | <- | Minus |
arm_2L | 3696532..3696604 | 7..83 | 94 | | Minus |
BS16004.complete Sequence
281 bp assembled on 2007-05-07
GenBank Submission: FJ638017
> BS16004.complete
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAATAAAAGCTTTCTAGACCAT
BS16004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 249 | CG16712-PB | 1..249 | 17..265 | 1245 | 100 | Plus |
CG16712-RA | 249 | CG16712-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..310 | 17..266 | 1250 | 100 | Plus |
CG16712-RA | 359 | CG16712-RA | 61..310 | 17..266 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696289..3696471 | 266..84 | 915 | 100 | Minus |
2L | 23513712 | 2L | 3696532..3696598 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:56:58 has no hits.
BS16004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:51 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:14 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 58..316 | 7..272 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:42 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 61..307 | 17..263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:51 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 58..316 | 7..272 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:31 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 61..307 | 17..263 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:31 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696292..3696471 | 84..263 | 100 | <- | Minus |
2L | 3696532..3696598 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:42 Download gff for
BS16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696292..3696471 | 84..263 | 100 | <- | Minus |
arm_2L | 3696532..3696598 | 17..83 | 100 | | Minus |
BS16004.pep Sequence
Translation from 16 to 264
> BS16004.pep
MKFIAAVCLMFALVAVALGLKDPICGLPAGIDGNGLIKCAAFIPSFSYHP
ETNSCEKFIYGGCGGNENRFGTQELCEQKCKE*
BS16004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PB | 82 | CG16712-PB | 1..82 | 1..82 | 448 | 100 | Plus |
CG16712-PA | 82 | CG16712-PA | 1..82 | 1..82 | 448 | 100 | Plus |
CG16713-PA | 82 | CG16713-PA | 1..80 | 1..80 | 253 | 56.2 | Plus |
CG43165-PA | 95 | CG43165-PA | 1..81 | 1..81 | 244 | 53.1 | Plus |
Acp24A4-PC | 78 | CG31779-PC | 1..78 | 1..82 | 184 | 46.3 | Plus |