Clone Sequence Records
BS16005.3prime Sequence
312 bp (312 high quality bases) assembled on 2007-04-16
> BS16005.3prime
ATGGTCTAGAAAGCTTTTATCCTTTGAACTTGCAGAAGCCCCACTTGCAA
TTTCTCACGGTGTTCGAGACGGGACGACACCAGTTGTTCTTCCAGGAACA
GTAGACCACCTGGTAAACCACCTCAGGAGCGTTGGTGGTCGTCGTGGCGG
AGCTCGATGGTGCCGCCGTTGTTGTTGTTGTTGTGGTCGTTGTACTCGTT
GTGGGTGCTGGTACCACATAGATCACTCGCCGCTTGAATCCCGATGCGGA
CTGGAAAAGAACGATTGCAGCCAAAACACAGATCACAAAGTACTTCATGT
CGACTGATAACT
BS16005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 282 | CG13738-RA | 1..282 | 298..17 | 1385 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..322 | 298..14 | 1410 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973156..13973440 | 14..298 | 1410 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:55:49 has no hits.
BS16005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:09 Download gff for
BS16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-PA | 1..282 | 17..298 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:08 Download gff for
BS16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..322 | 14..309 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:32 Download gff for
BS16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..322 | 14..309 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:32 Download gff for
BS16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973156..13973448 | 14..309 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:08 Download gff for
BS16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966256..13966548 | 14..309 | 98 | | Plus |
BS16005.5prime Sequence
312 bp (312 high quality bases) assembled on 2007-04-16
> BS16005.5prime
GAAGTTATCAGTCGACATGAAGTACTTTGTGATCTGTGTTTTGGCTGCAA
TCGTTCTTTTCCAGTCCGCATCGGGATTCAAGCGGCGAGTGATCTATGTG
GTACCAGCACCCACAACGAGTACAACGACCACAACAACAACAACAACGGC
GGCACCATCGAGCTCCGCCACGACGACCACCAACGCTCCTGAGGTGGTTT
ACCAGGTGGTCTACTGTTCCTGGAAGAACAACTGGTGTCGTCCCGTCTCG
AACACCGTGAGAAATTGCAAGTGGGGCTTCTGCAAGTTCAATGGATAAAA
GCTTTCTAGACC
BS16005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 282 | CG13738-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..322 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973156..13973440 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:39 has no hits.
BS16005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:10 Download gff for
BS16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-PA | 1..282 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:22 Download gff for
BS16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..322 | 6..301 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:30 Download gff for
BS16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..322 | 6..301 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:30 Download gff for
BS16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973156..13973448 | 6..301 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:22 Download gff for
BS16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966256..13966548 | 6..301 | 98 | | Minus |
BS16005.complete Sequence
314 bp assembled on 2007-05-07
GenBank Submission: FJ638018
> BS16005.complete
GAAGTTATCAGTCGACATGAAGTACTTTGTGATCTGTGTTTTGGCTGCAA
TCGTTCTTTTCCAGTCCGCATCGGGATTCAAGCGGCGAGTGATCTATGTG
GTACCAGCACCCACAACGAGTACAACGACCACAACAACAACAACAACGGC
GGCACCATCGAGCTCCGCCACGACGACCACCAACGCTCCTGAGGTGGTTT
ACCAGGTGGTCTACTGTTCCTGGAAGAACAACTGGTGTCGTCCCGTCTCG
AACACCGTGAGAAATTGCAAGTGGGGCTTCTGCAAGTTCAATGGATAAAA
GCTTTCTAGACCAT
BS16005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 282 | CG13738-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..322 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973156..13973440 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:39 has no hits.
BS16005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:53 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 1..282 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:21 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 26..318 | 6..301 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:55 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 38..317 | 17..296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:54 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 26..318 | 6..301 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:16 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 38..317 | 17..296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:16 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973161..13973440 | 17..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:55 Download gff for
BS16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966261..13966540 | 17..296 | 100 | | Minus |
BS16005.pep Sequence
Translation from 16 to 297
> BS16005.pep
MKYFVICVLAAIVLFQSASGFKRRVIYVVPAPTTSTTTTTTTTTAAPSSS
ATTTTNAPEVVYQVVYCSWKNNWCRPVSNTVRNCKWGFCKFNG*
BS16005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 93 | CG13738-PA | 1..93 | 1..93 | 502 | 100 | Plus |
