Clone Sequence Records
BS16008.5prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16008.5prime
GAAGTTATCAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCG
TTCTGGGCGCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGT
GGGCATCAGTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCT
GCAGTACACCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGG
CCATCGCCTCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCC
TATCCCGGCTGCTGTCCCAAGTTCAACTGCTGAAAGCTTTCTAGACC
BS16008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32667-PA | 267 | CG32667-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 368 | CG32667-RA | 20..286 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140001..11140110 | 192..83 | 550 | 100 | Minus |
X | 23542271 | X | 11139844..11139935 | 283..192 | 460 | 100 | Minus |
X | 23542271 | X | 11140178..11140244 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:03:04 has no hits.
BS16008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:11 Download gff for
BS16008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:56 Download gff for
BS16008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..286 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:29 Download gff for
BS16008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp7-RA | 14..286 | 9..283 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:29 Download gff for
BS16008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11139844..11139934 | 193..283 | 100 | <- | Minus |
X | 11140001..11140109 | 84..192 | 100 | <- | Minus |
X | 11140178..11140250 | 9..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:56 Download gff for
BS16008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11033877..11033967 | 193..283 | 100 | <- | Minus |
arm_X | 11034034..11034142 | 84..192 | 100 | <- | Minus |
arm_X | 11034211..11034283 | 9..83 | 94 | | Minus |
BS16008.3prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16008.3prime
ATGGTCTAGAAAGCTTTCAGCAGTTGAACTTGGGACAGCAGCCGGGATAG
GGTTTGCTCAGATCCTCTTCCATTTTGCAGGGCTTCAAGGAGGCGATGGC
CGGGCATCCCAAGGCAGTCACCTGTTTGGGTGCCTGGCAGGTGTACTGCA
GGCAGCGACCTTCCGGCGTGTACTTCTCTCCGGTCTTGAACTGATGCCCA
CCGATCTCGCAATCCACGGCGAACACCAGCAGCGAGTGGGCGCCCAGAAC
GAGCAGGCAGAGTACGAACGTGACCGATTTCATGTCGACTGATAACT
BS16008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32667-PA | 267 | CG32667-RA | 1..267 | 283..17 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 368 | CG32667-RA | 20..286 | 283..17 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140001..11140110 | 108..217 | 550 | 100 | Plus |
X | 23542271 | X | 11139844..11139935 | 17..108 | 460 | 100 | Plus |
X | 23542271 | X | 11140178..11140244 | 217..283 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:46 has no hits.
BS16008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:10 Download gff for
BS16008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:07 Download gff for
BS16008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..286 | 17..291 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:19 Download gff for
BS16008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp7-RA | 14..286 | 17..291 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:19 Download gff for
BS16008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11140001..11140109 | 108..216 | 100 | <- | Plus |
X | 11140178..11140250 | 217..291 | 94 | | Plus |
X | 11139844..11139934 | 17..107 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:07 Download gff for
BS16008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11033877..11033967 | 17..107 | 100 | <- | Plus |
arm_X | 11034034..11034142 | 108..216 | 100 | <- | Plus |
arm_X | 11034211..11034283 | 217..291 | 94 | | Plus |
BS16008.complete Sequence
299 bp assembled on 2007-05-07
GenBank Submission: FJ638019
> BS16008.complete
GAAGTTATCAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCG
TTCTGGGCGCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGT
GGGCATCAGTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCT
GCAGTACACCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGG
CCATCGCCTCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCC
TATCCCGGCTGCTGTCCCAAGTTCAACTGCTGAAAGCTTTCTAGACCAT
BS16008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 267 | CG32667-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 368 | CG32667-RA | 20..286 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140001..11140110 | 192..83 | 550 | 100 | Minus |
X | 23542271 | X | 11139844..11139935 | 283..192 | 460 | 100 | Minus |
X | 23542271 | X | 11140178..11140244 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:55:35 has no hits.
BS16008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:55 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:22 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..286 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:07 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 20..285 | 17..282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:55 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..286 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:25 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp7-RA | 20..285 | 17..282 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:25 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11139845..11139934 | 193..282 | 100 | <- | Minus |
X | 11140001..11140109 | 84..192 | 100 | <- | Minus |
X | 11140178..11140244 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:07 Download gff for
BS16008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11033878..11033967 | 193..282 | 100 | <- | Minus |
arm_X | 11034034..11034142 | 84..192 | 100 | <- | Minus |
arm_X | 11034211..11034277 | 17..83 | 100 | | Minus |
BS16008.pep Sequence
Translation from 16 to 282
> BS16008.pep
MKSVTFVLCLLVLGAHSLLVFAVDCEIGGHQFKTGEKYTPEGRCLQYTCQ
APKQVTALGCPAIASLKPCKMEEDLSKPYPGCCPKFNC*
BS16008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-PA | 88 | CG32667-PA | 1..88 | 1..88 | 488 | 100 | Plus |