Clone Sequence Records
BS16010.3prime Sequence
300 bp (300 high quality bases) assembled on 2007-04-16
> BS16010.3prime
ATGGTCTAGAAAGCTTTTACCAGCCTTGTTGCTGTTGCTGCTGCTGATCA
CCGAATCCACCTCCGAATCCACCTCCAAATCCCCCTTGCTGCTGCTGCTG
CTGATCACCGAATCCACCTCCGAATCCACCGCCAAATCCTCCTTGCTGCT
GCTGCTGATCACCAAATCCACCTCCAAATCCTCCTTGCTGCTGCTGCTGC
TGATCACCGAATCCACCGCCGAATCCAAACTGAGGTAGGGCAGCGGCCGC
GGCGAATAGGGCAATGAAGAGGATCAAAAACTTCATGTCGACTGATAACT
BS16010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PA | 270 | CG31775-RA | 1..270 | 286..17 | 1325 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..311 | 287..15 | 1350 | 99.6 | Minus |
CG31775-RA | 613 | CG31775-RA | 39..311 | 287..15 | 1350 | 99.6 | Minus |
CG42586-RB | 613 | CG42586-RB | 39..311 | 287..15 | 1350 | 99.6 | Minus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 226..86 | 415 | 85.6 | Minus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 226..86 | 415 | 85.6 | Minus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 181..29 | 400 | 85 | Minus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 181..29 | 400 | 85 | Minus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 227..165 | 300 | 98.4 | Minus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 227..165 | 300 | 98.4 | Minus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 128..66 | 285 | 96.8 | Minus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 128..66 | 285 | 96.8 | Minus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 71..29 | 185 | 95.3 | Minus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 227..185 | 185 | 95.3 | Minus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 71..29 | 185 | 95.3 | Minus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 227..185 | 185 | 95.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737392..14737652 | 15..275 | 1290 | 99.6 | Plus |
2L | 23513712 | 2L | 14741463..14741723 | 15..275 | 1290 | 99.6 | Plus |
2L | 23513712 | 2L | 14737406..14737558 | 86..226 | 365 | 85.6 | Plus |
2L | 23513712 | 2L | 14741477..14741629 | 86..226 | 365 | 85.6 | Plus |
2L | 23513712 | 2L | 14737463..14737603 | 29..181 | 350 | 85 | Plus |
2L | 23513712 | 2L | 14741534..14741674 | 29..181 | 350 | 85 | Plus |
2L | 23513712 | 2L | 14737443..14737505 | 165..227 | 300 | 98.4 | Plus |
2L | 23513712 | 2L | 14741514..14741576 | 165..227 | 300 | 98.4 | Plus |
2L | 23513712 | 2L | 14737542..14737604 | 66..128 | 285 | 96.8 | Plus |
2L | 23513712 | 2L | 14741613..14741675 | 66..128 | 285 | 96.8 | Plus |
2L | 23513712 | 2L | 14737406..14737448 | 185..227 | 185 | 95.3 | Plus |
2L | 23513712 | 2L | 14737562..14737604 | 29..71 | 185 | 95.3 | Plus |
2L | 23513712 | 2L | 14741477..14741519 | 185..227 | 185 | 95.3 | Plus |
2L | 23513712 | 2L | 14741633..14741675 | 29..71 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2015-02-13 07:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 48..25 | 111 | 95.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 105..26 | 110 | 62.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2396 | 48..26 | 106 | 95.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 48..26 | 106 | 95.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 48..26 | 106 | 95.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 48..26 | 106 | 95.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2453..2489 | 50..15 | 101 | 78.4 | Minus |
BS16010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:12 Download gff for
BS16010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-PA | 1..270 | 17..286 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:14 Download gff for
BS16010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 28..311 | 15..300 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:11 Download gff for
BS16010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 28..311 | 15..300 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:11 Download gff for
BS16010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737392..14737651 | 15..274 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:14 Download gff for
BS16010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737392..14737651 | 15..274 | 99 | <- | Plus |
BS16010.5prime Sequence
300 bp (300 high quality bases) assembled on 2007-04-16
> BS16010.5prime
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGTAAAAGCTTTCTAGACC
BS16010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PA | 270 | CG31775-RA | 1..270 | 17..286 | 1325 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG42586-RB | 613 | CG42586-RB | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 77..217 | 415 | 85.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 77..217 | 415 | 85.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 122..274 | 400 | 85 | Plus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 122..274 | 400 | 85 | Plus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 76..118 | 185 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737392..14737652 | 288..28 | 1290 | 99.6 | Minus |
2L | 23513712 | 2L | 14741463..14741723 | 288..28 | 1290 | 99.6 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 274..232 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 274..232 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2015-02-11 19:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 255..278 | 111 | 95.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 198..277 | 110 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2396 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2453..2489 | 253..288 | 101 | 78.4 | Plus |
BS16010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:12 Download gff for
BS16010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-PA | 1..270 | 17..286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:41 Download gff for
BS16010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 26..311 | 1..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:31 Download gff for
BS16010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 26..311 | 1..288 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:31 Download gff for
BS16010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737392..14737651 | 29..288 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:41 Download gff for
BS16010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737392..14737651 | 29..288 | 99 | <- | Minus |
BS16010.complete Sequence
302 bp assembled on 2007-05-07
GenBank Submission: FJ638021
> BS16010.complete
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGTAAAAGCTTTCTAGACC
AT
BS16010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 270 | CG31775-PB | 1..270 | 17..286 | 1335 | 99.6 | Plus |
CG31775-RA | 270 | CG31775-PA | 1..270 | 17..286 | 1335 | 99.6 | Plus |
CG42586-RB | 270 | CG42586-PB | 1..270 | 17..286 | 1335 | 99.6 | Plus |
CG31775-RB | 270 | CG31775-PB | 106..258 | 77..217 | 365 | 85.6 | Plus |
CG31775-RA | 270 | CG31775-PA | 106..258 | 77..217 | 365 | 85.6 | Plus |
CG31775-RB | 270 | CG31775-PB | 61..201 | 122..274 | 350 | 85 | Plus |
CG31775-RA | 270 | CG31775-PA | 61..201 | 122..274 | 350 | 85 | Plus |
CG31775-RB | 270 | CG31775-PB | 159..221 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 270 | CG31775-PA | 159..221 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 270 | CG31775-PB | 60..122 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 270 | CG31775-PA | 60..122 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 270 | CG31775-PB | 60..102 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 270 | CG31775-PB | 216..258 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 270 | CG31775-PA | 60..102 | 232..274 | 185 | 95.3 | Plus |
CG31775-RA | 270 | CG31775-PA | 216..258 | 76..118 | 185 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG42586-RB | 613 | CG42586-RB | 39..311 | 16..288 | 1350 | 99.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 77..217 | 365 | 85.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 77..217 | 365 | 85.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 122..274 | 350 | 85 | Plus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 122..274 | 350 | 85 | Plus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 232..274 | 185 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737392..14737652 | 288..28 | 1290 | 99.6 | Minus |
2L | 23513712 | 2L | 14741463..14741723 | 288..28 | 1290 | 99.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 274..232 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 274..232 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-27 13:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 255..278 | 111 | 95.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 198..277 | 110 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2396 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2453..2489 | 253..288 | 101 | 78.4 | Plus |
BS16010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:45:58 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:24 Download gff for
BS16010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 23..308 | 1..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:45 Download gff for
BS16010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 40..307 | 17..284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:45:58 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:48 Download gff for
BS16010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 40..307 | 17..284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:48 Download gff for
BS16010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737396..14737658 | 22..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:45 Download gff for
BS16010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737396..14737658 | 22..284 | 98 | | Minus |
BS16010.pep Sequence
Translation from 16 to 285
> BS16010.pep
MKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGGGFGDQQQQQGG
FGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGW*
BS16010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PB | 89 | CG31775-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG31775-PA | 89 | CG31775-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG42586-PB | 89 | CG42586-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG42586-PA | 89 | CG42586-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..76 | 1..88 | 225 | 63.7 | Plus |