Clone Sequence Records
BS16013.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16013.3prime
ATGGTCTAGAAAGCTTTTACCTTTAAAAACCGCCGAAACCACCAAACTCT
TGTTGCTGCTGACCAAAGTTTCCATTTCCGCCAAAACTTTCCTGCTGTTG
CTGCTGTCCAAAGGAACCGAAACCACCGAATCCTTGTCCAAAACCGCCCT
GCTGTTGCTGCTGCTCAAGCCCGCCACCAAATCCGCCGAATCCGAACTGG
GGACGCGCCGAGGCTATGGCAAACAGAGCAATCAGACAGAAAATCAAGAA
TTTCATGTCGACTGATAACT
BS16013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-PA | 240 | CG4440-RA | 1..233 | 256..24 | 1165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 538 | CG4440-RB | 84..316 | 256..24 | 1165 | 100 | Minus |
CG4440-RA | 384 | CG4440-RA | 84..316 | 256..24 | 1165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16330078..16330299 | 245..24 | 1110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:09:31 has no hits.
BS16013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:14 Download gff for
BS16013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-PA | 1..240 | 16..256 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:44 Download gff for
BS16013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 79..324 | 15..261 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:42 Download gff for
BS16013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 79..324 | 15..261 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:42 Download gff for
BS16013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16330074..16330301 | 23..250 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:44 Download gff for
BS16013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16330074..16330301 | 23..250 | 98 | -> | Minus |
BS16013.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16013.5prime
GAAGTTATCCTTCGACATGAAATTCTTGATTTTCTGTCTGATTGCTCTGT
TTGCCATAGCCTCGGCGCGTCCCCAGTTCGGATTCGGCGGATTTGGTGGC
GGGCTTGAGCAGCAGCAACAGCAGGGCGGTTTTGGACAAGGATTCGGTGG
TTTCGGTTCCTTTGGACAGCAGCAACAGCAGGAAAGTTTTGGCGGAAATG
GAAACTTTGGTCAGCAGCAACAAGAGTTTGGTGGTTTCGGCGGTTTTTAC
GGTTAAAAGCTTTCTAGACC
BS16013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-PA | 240 | CG4440-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 538 | CG4440-RB | 84..324 | 17..257 | 1205 | 100 | Plus |
CG4440-RA | 384 | CG4440-RA | 84..324 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16330078..16330307 | 28..257 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:58:19 has no hits.
BS16013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:15 Download gff for
BS16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:24 Download gff for
BS16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 78..328 | 11..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:51 Download gff for
BS16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 78..328 | 11..261 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:51 Download gff for
BS16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16330074..16330311 | 23..261 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:24 Download gff for
BS16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16330074..16330311 | 23..261 | 98 | | Plus |
BS16013.complete Sequence
272 bp assembled on 2007-05-07
GenBank Submission: FJ638022
> BS16013.complete
GAAGTTATCAGTCGACATGAAATTCTTGATTTTCTGTCTGATTGCTCTGT
TTGCCATAGCCTCGGCGCGTCCCCAGTTCGGATTCGGCGGATTTGGTGGC
GGGCTTGAGCAGCAGCAACAGCAGGGCGGTTTTGGACAAGGATTCGGTGG
TTTCGGTTCCTTTGGACAGCAGCAACAGCAGGAAAGTTTTGGCGGAAATG
GAAACTTTGGTCAGCAGCAACAAGAGTTTGGTGGTTTCGGCGGTTTTTAC
GGTTAAAAGCTTTCTAGACCAT
BS16013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 240 | CG4440-PB | 1..240 | 17..256 | 1200 | 100 | Plus |
CG4440-RA | 240 | CG4440-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 538 | CG4440-RB | 84..324 | 17..257 | 1205 | 100 | Plus |
CG4440-RA | 384 | CG4440-RA | 84..324 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16330078..16330307 | 28..257 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:58:39 has no hits.
BS16013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:00 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:25 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 77..326 | 12..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:36 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 84..321 | 17..254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:00 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 77..326 | 12..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:41 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 84..321 | 17..254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:41 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16330074..16330304 | 23..254 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:36 Download gff for
BS16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16330074..16330304 | 23..254 | 99 | | Plus |
BS16013.pep Sequence
Translation from 16 to 255
> BS16013.pep
MKFLIFCLIALFAIASARPQFGFGGFGGGLEQQQQQGGFGQGFGGFGSFG
QQQQQESFGGNGNFGQQQQEFGGFGGFYG*
BS16013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-PB | 79 | CG4440-PB | 1..79 | 1..79 | 429 | 100 | Plus |
CG4440-PA | 79 | CG4440-PA | 1..79 | 1..79 | 429 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..78 | 1..74 | 228 | 66.7 | Plus |
CG15282-PC | 79 | CG15282-PC | 1..78 | 1..74 | 228 | 66.7 | Plus |
CG15282-PA | 79 | CG15282-PA | 1..78 | 1..74 | 228 | 66.7 | Plus |