Clone Sequence Records
BS16015.complete Sequence
224 bp assembled on 2007-05-07
GenBank Submission: FJ638023
> BS16015.complete
GAAGTTATCAGTCGACATGAACTTCTACAAGATCTTCGTTTTCGTCGCCC
TCATCCTGGCCATCAGCATTGGACAATCGGAAGCCGGTTGGCTGAAGAAA
CTTGGCAAGAGAATCGAGCGCATTGGCCAGCACACCCGGGATGCAACCAT
TCAAGGACTGGGAATTGCGCAACAGGCCGCCAATGTGGCAGCCACCGCCA
GAGGATGAAAGCTTTCTAGACCAT
BS16015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-RA | 192 | CG1373-PA | 1..192 | 17..208 | 960 | 100 | Plus |
CecA1-RA | 192 | CG1365-PA | 1..192 | 17..208 | 585 | 87 | Plus |
CecA2-RA | 192 | CG1367-PA | 1..179 | 17..195 | 565 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-RA | 386 | CG1373-RA | 93..285 | 16..208 | 965 | 100 | Plus |
CecA1-RA | 339 | CG1365-RA | 74..266 | 16..208 | 590 | 87 | Plus |
CecA2-RA | 355 | CG1367-RA | 82..261 | 16..195 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30216576..30216676 | 16..116 | 505 | 100 | Plus |
3R | 32079331 | 3R | 30216745..30216837 | 116..208 | 465 | 100 | Plus |
3R | 32079331 | 3R | 30210947..30211047 | 16..116 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30212237..30212337 | 16..116 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30213626..30213730 | 116..12 | 225 | 81 | Minus |
3R | 32079331 | 3R | 30211111..30211200 | 119..208 | 210 | 82.2 | Plus |
3R | 32079331 | 3R | 30213474..30213565 | 210..119 | 205 | 81.5 | Minus |
3R | 32079331 | 3R | 30212402..30212474 | 123..195 | 200 | 84.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:47 has no hits.
BS16015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:19 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 1..192 | 17..208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:05:28 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 12..218 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:12 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 94..284 | 17..207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:20 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 12..218 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:41 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 94..284 | 17..207 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:41 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30216577..30216675 | 17..115 | 100 | -> | Plus |
3R | 30216745..30216836 | 116..207 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:12 Download gff for
BS16015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26042467..26042558 | 116..207 | 100 | | Plus |
arm_3R | 26042299..26042397 | 17..115 | 100 | -> | Plus |
BS16015.3prime Sequence
222 bp (222 high quality bases) assembled on 2007-04-16
> BS16015.3prime
ATGGTCTAGAAAGCTTTCATCCTCTGGCGGTGGCTGCCACATTGGCGGCC
TGTTGCGCAATTCCCAGTCCTTGAATGGTTGCATCCCGGGTGTGCTGGCC
AATGCGCTCGATTCTCTTGCCAAGTTTCTTCAGCCAACCGGCTTCCGATT
GTCCAATGCTGATGGCCAGGATGAGGGCGACGAAAACGAAGATCTTGTAG
AAGTTCATGTCGACTGATAACT
BS16015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1373-PA | 192 | CecC-RA | 1..192 | 208..17 | 960 | 100 | Minus |
CG1365-PA | 192 | CecA1-RA | 1..170 | 208..39 | 375 | 88.8 | Minus |
CG1367-PA | 192 | CecA2-RA | 1..101 | 208..108 | 305 | 92 | Minus |
CG1367-PA | 192 | CecA2-RA | 139..179 | 70..30 | 130 | 92.6 | Minus |
CG1878-PA | 192 | CecB-RA | 1..51 | 208..158 | 130 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-RA | 386 | CG1373-RA | 93..285 | 209..17 | 965 | 100 | Minus |
CecA1-RA | 339 | CG1365-RA | 74..266 | 209..17 | 590 | 87 | Minus |
CecA2-RA | 355 | CG1367-RA | 82..261 | 209..30 | 570 | 87.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30216576..30216676 | 209..109 | 505 | 100 | Minus |
3R | 32079331 | 3R | 30216745..30216837 | 109..17 | 465 | 100 | Minus |
3R | 32079331 | 3R | 30210947..30211047 | 209..109 | 385 | 92.1 | Minus |
3R | 32079331 | 3R | 30212237..30212337 | 209..109 | 385 | 92.1 | Minus |
3R | 32079331 | 3R | 30213626..30213730 | 109..213 | 225 | 81 | Plus |
3R | 32079331 | 3R | 30211111..30211200 | 106..17 | 210 | 82.2 | Minus |
3R | 32079331 | 3R | 30213474..30213565 | 15..106 | 205 | 81.5 | Plus |
3R | 32079331 | 3R | 30212402..30212474 | 102..30 | 200 | 84.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:36 has no hits.
BS16015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:16 Download gff for
BS16015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1373-PA | 1..192 | 17..208 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:19 Download gff for
BS16015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 7..213 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:54:48 Download gff for
BS16015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 7..213 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:54:48 Download gff for
BS16015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30216745..30216844 | 7..109 | 96 | | Minus |
3R | 30216572..30216675 | 110..213 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:19 Download gff for
BS16015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26042294..26042397 | 110..213 | 98 | -> | Minus |
arm_3R | 26042467..26042566 | 7..109 | 96 | | Minus |
BS16015.5prime Sequence
222 bp (222 high quality bases) assembled on 2007-04-16
> BS16015.5prime
GAAGTTATCAGTCGACATGAACTTCTACAAGATCTTCGTTTTCGTCGCCC
TCATCCTGGCCATCAGCATTGGACAATCGGAAGCCGGTTGGCTGAAGAAA
CTTGGCAAGAGAATCGAGCGCATTGGCCAGCACACCCGGGATGCAACCAT
TCAAGGACTGGGAATTGCGCAACAGGCCGCCAATGTGGCAGCCACCGCCA
GAGGATGAAAGCTTTCTAGACC
BS16015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1373-PA | 192 | CecC-RA | 1..192 | 17..208 | 960 | 100 | Plus |
CG1365-PA | 192 | CecA1-RA | 1..170 | 17..186 | 375 | 88.8 | Plus |
CG1367-PA | 192 | CecA2-RA | 1..101 | 17..117 | 305 | 92 | Plus |
CG1367-PA | 192 | CecA2-RA | 139..179 | 155..195 | 130 | 92.6 | Plus |
CG1878-PA | 192 | CecB-RA | 1..51 | 17..67 | 130 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-RA | 386 | CG1373-RA | 93..285 | 16..208 | 965 | 100 | Plus |
CecA1-RA | 339 | CG1365-RA | 74..266 | 16..208 | 590 | 87 | Plus |
CecA2-RA | 355 | CG1367-RA | 82..261 | 16..195 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30216576..30216676 | 16..116 | 505 | 100 | Plus |
3R | 32079331 | 3R | 30216745..30216837 | 116..208 | 465 | 100 | Plus |
3R | 32079331 | 3R | 30210947..30211047 | 16..116 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30212237..30212337 | 16..116 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30213626..30213730 | 116..12 | 225 | 81 | Minus |
3R | 32079331 | 3R | 30211111..30211200 | 119..208 | 210 | 82.2 | Plus |
3R | 32079331 | 3R | 30213474..30213565 | 210..119 | 205 | 81.5 | Minus |
3R | 32079331 | 3R | 30212402..30212474 | 123..195 | 200 | 84.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:25:47 has no hits.
BS16015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:16 Download gff for
BS16015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1373-PA | 1..192 | 17..208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:14 Download gff for
BS16015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 12..218 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:03 Download gff for
BS16015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 89..292 | 12..218 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:03 Download gff for
BS16015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30216572..30216675 | 12..115 | 98 | -> | Plus |
3R | 30216745..30216844 | 116..218 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:14 Download gff for
BS16015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26042467..26042566 | 116..218 | 96 | | Plus |
arm_3R | 26042294..26042397 | 12..115 | 98 | -> | Plus |
BS16015.pep Sequence
Translation from 16 to 207
> BS16015.pep
MNFYKIFVFVALILAISIGQSEAGWLKKLGKRIERIGQHTRDATIQGLGI
AQQAANVAATARG*
BS16015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-PA | 63 | CG1373-PA | 1..63 | 1..63 | 311 | 100 | Plus |
CecA2-PA | 63 | CG1367-PA | 1..63 | 1..63 | 297 | 92.1 | Plus |
CecA1-PA | 63 | CG1365-PA | 1..63 | 1..63 | 297 | 92.1 | Plus |
CecB-PA | 63 | CG1878-PA | 1..63 | 1..63 | 276 | 88.9 | Plus |