Clone Sequence Records
BS16017.3prime Sequence
306 bp (306 high quality bases) assembled on 2007-04-16
> BS16017.3prime
ATGGTCTAGAAAGCTTCTACTCCGCCAGCTCTCCGCCAGGCACCAACATT
GTGATATTGTTCCCGTTGAGCAGAATCTGATCCAGTTTGGTGATGCGGCG
GCCGTCGGGGGTATTTTCATACTCCGTTACGTCGTCCAAGAGCATATTCA
CAAAGTCATCGAATCCTAAGAGAGTTCCCACCATCTCCTTGTCGTTCTTC
ATGATAATGTGGATGCGGGAACCGATGCATTTGTCCACCAATTCCAATGG
CATTAGGGTAGAGATGTTGGAGGGGGGTGGAACGGCAGTCATGTCGACTG
ATAACT
BS16017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-PA | 276 | CG6610-RA | 1..276 | 292..17 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-RC | 520 | CG6610-RC | 103..380 | 294..17 | 1390 | 100 | Minus |
CG6610-RB | 421 | CG6610-RB | 103..380 | 294..17 | 1390 | 100 | Minus |
CG6610-RA | 586 | CG6610-RA | 103..380 | 294..17 | 1390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6075760..6075961 | 244..43 | 995 | 99.5 | Minus |
3L | 28110227 | 3L | 6075638..6075688 | 294..244 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:53:01 has no hits.
BS16017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:17 Download gff for
BS16017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-PA | 1..276 | 17..292 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:15 Download gff for
BS16017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 96..387 | 11..303 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:56 Download gff for
BS16017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 96..387 | 11..303 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:56 Download gff for
BS16017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6075631..6075688 | 244..303 | 93 | -> | Minus |
3L | 6075761..6075957 | 47..243 | 100 | -> | Minus |
3L | 6076023..6076059 | 11..46 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:15 Download gff for
BS16017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6068731..6068788 | 244..303 | 93 | -> | Minus |
arm_3L | 6068861..6069057 | 47..243 | 100 | -> | Minus |
arm_3L | 6069123..6069159 | 11..46 | 94 | | Minus |
BS16017.5prime Sequence
306 bp (306 high quality bases) assembled on 2007-04-16
> BS16017.5prime
GAAGTTATCAGTCGACATGACTGCCGTTCCACCCCCCTCCAACATCTCTA
CCCTAATGCCATTGGAATTGGTGGACAAATGCATCGGTTCCCGCATCCAC
ATTATCATGAAGAACGACAAGGAGATGGTGGGAACTCTCTTAGGATTCGA
TGACTTTGTGAATATGCTCTTGGACGACGTAACGGAGTATGAAAATACCC
CCGACGGCCGCCGCATCACCAAACTGGATCAGATTCTGCTCAACGGGAAC
AATATCACAATGTTGGTGCCTGGCGGAGAGCTGGCGGAGTAGAAGCTTTC
TAGACC
BS16017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-PA | 276 | CG6610-RA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-RC | 520 | CG6610-RC | 103..380 | 15..292 | 1390 | 100 | Plus |
CG6610-RB | 421 | CG6610-RB | 103..380 | 15..292 | 1390 | 100 | Plus |
CG6610-RA | 586 | CG6610-RA | 103..380 | 15..292 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6075760..6075961 | 65..266 | 995 | 99.5 | Plus |
3L | 28110227 | 3L | 6075638..6075688 | 15..65 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:09:25 has no hits.
BS16017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:17 Download gff for
BS16017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-PA | 1..276 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:25 Download gff for
BS16017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 96..387 | 6..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:49 Download gff for
BS16017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 96..387 | 6..298 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:49 Download gff for
BS16017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6075631..6075688 | 6..65 | 93 | -> | Plus |
3L | 6075761..6075957 | 66..262 | 100 | -> | Plus |
3L | 6076023..6076059 | 263..298 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:25 Download gff for
BS16017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6068731..6068788 | 6..65 | 93 | -> | Plus |
arm_3L | 6068861..6069057 | 66..262 | 100 | -> | Plus |
arm_3L | 6069123..6069159 | 263..298 | 94 | | Plus |
BS16017.complete Sequence
308 bp assembled on 2007-05-07
GenBank Submission: FJ638024
> BS16017.complete
GAAGTTATCAGTCGACATGACTGCCGTTCCACCCCCCTCCAACATCTCTA
CCCTAATGCCATTGGAATTGGTGGACAAATGCATCGGTTCCCGCATCCAC
ATTATCATGAAGAACGACAAGGAGATGGTGGGAACTCTCTTAGGATTCGA
TGACTTTGTGAATATGCTCTTGGACGACGTAACGGAGTATGAAAATACCC
CCGACGGCCGCCGCATCACCAAACTGGATCAGATTCTGCTCAACGGGAAC
AATATCACAATGTTGGTGCCTGGCGGAGAGCTGGCGGAGTAGAAGCTTTC
TAGACCAT
BS16017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-RC | 276 | CG6610-PC | 1..276 | 17..292 | 1380 | 100 | Plus |
CG6610-RB | 276 | CG6610-PB | 1..276 | 17..292 | 1380 | 100 | Plus |
CG6610-RA | 276 | CG6610-PA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-RC | 520 | CG6610-RC | 103..380 | 15..292 | 1390 | 100 | Plus |
CG6610-RB | 421 | CG6610-RB | 103..380 | 15..292 | 1390 | 100 | Plus |
CG6610-RA | 586 | CG6610-RA | 103..380 | 15..292 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6075760..6075961 | 65..266 | 995 | 99.5 | Plus |
3L | 28110227 | 3L | 6075638..6075688 | 15..65 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:21:45 has no hits.
BS16017.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:18 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 1..276 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:58 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 95..386 | 6..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:10 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 105..380 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:18 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 95..386 | 6..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:43 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6610-RA | 105..380 | 17..292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:43 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6075640..6075688 | 17..65 | 100 | -> | Plus |
3L | 6075761..6075957 | 66..262 | 100 | -> | Plus |
3L | 6076023..6076052 | 263..292 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:10 Download gff for
BS16017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6068740..6068788 | 17..65 | 100 | -> | Plus |
arm_3L | 6068861..6069057 | 66..262 | 100 | -> | Plus |
arm_3L | 6069123..6069152 | 263..292 | 100 | | Plus |
BS16017.pep Sequence
Translation from 16 to 291
> BS16017.pep
MTAVPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNM
LLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGELAE*
BS16017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6610-PC | 91 | CG6610-PC | 1..91 | 1..91 | 469 | 100 | Plus |
CG6610-PB | 91 | CG6610-PB | 1..91 | 1..91 | 469 | 100 | Plus |
CG6610-PA | 91 | CG6610-PA | 1..91 | 1..91 | 469 | 100 | Plus |