Clone Sequence Records
BS16024.3prime Sequence
303 bp (303 high quality bases) assembled on 2007-04-16
> BS16024.3prime
ATGGTCTAGAAAGCTTTTAGTCCAGGCTCTTGGGCGCGTAGTAGTTGAAG
TGGATGATACCAGAAGATTTCACGAATCCAATAGTGCCGGCCAGGACGAG
AATGCCAGTGATGAGCGCGGCATTGTACTTGGCGTTCTTCTGGCTGTGCT
GCTCCTTCCAGTCTCCAGCGGGCACGGGCAGATCGTTCATGGTGGAGTGG
GGACCATGTCCACCGTGGTAAGCGGCACGCGACAAAGCGCCAGCGTTCTT
GAGCAGAAGCCCCTGCTTGACAATGTGCTTAACCAACATGTCGACTGATA
ACT
BS16024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-PA | 273 | CG7630-RA | 1..273 | 289..17 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-RA | 417 | CG7630-RA | 57..330 | 290..17 | 1370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17425909..17426081 | 244..72 | 865 | 100 | Minus |
3L | 28110227 | 3L | 17426139..17426195 | 73..17 | 285 | 100 | Minus |
3L | 28110227 | 3L | 17425594..17425640 | 290..244 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:15:18 has no hits.
BS16024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:21 Download gff for
BS16024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-PA | 1..273 | 17..289 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:48 Download gff for
BS16024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 51..340 | 9..296 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:10 Download gff for
BS16024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 51..340 | 9..296 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:10 Download gff for
BS16024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17425588..17425640 | 244..296 | 94 | -> | Minus |
3L | 17425910..17426079 | 74..243 | 100 | -> | Minus |
3L | 17426139..17426205 | 9..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:48 Download gff for
BS16024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17418688..17418740 | 244..296 | 94 | -> | Minus |
arm_3L | 17419010..17419179 | 74..243 | 100 | -> | Minus |
arm_3L | 17419239..17419305 | 9..73 | 94 | | Minus |
BS16024.5prime Sequence
303 bp (303 high quality bases) assembled on 2007-04-16
> BS16024.5prime
GAAGTTATCAGTCGACATGTTGGTTAAGCACATTGTCAAGCAGGGGCTTC
TGCTCAAGAACGCTGGCGCTTTGTCGCGTGCCGCTTACCACGGTGGACAT
GGTCCCCACTCCACCATGAACGATCTGCCCGTGCCCGCTGGAGACTGGAA
GGAGCAGCACAGCCAGAAGAACGCCAAGTACAATGCCGCGCTCATCACTG
GCATTCTCGTCCTGGCCGGCACTATTGGATTCGTGAAATCTTCTGGTATC
ATCCACTTCAACTACTACGCGCCCAAGAGCCTGGACTAAAAGCTTTCTAG
ACC
BS16024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-PA | 273 | CG7630-RA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-RA | 417 | CG7630-RA | 57..330 | 16..289 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17425909..17426081 | 62..234 | 865 | 100 | Plus |
3L | 28110227 | 3L | 17426139..17426195 | 233..289 | 285 | 100 | Plus |
3L | 28110227 | 3L | 17425594..17425640 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:58:27 has no hits.
BS16024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:21 Download gff for
BS16024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-PA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:26 Download gff for
BS16024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 51..340 | 10..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:05 Download gff for
BS16024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 51..340 | 10..297 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:05 Download gff for
BS16024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17425588..17425640 | 10..62 | 94 | -> | Plus |
3L | 17425910..17426079 | 63..232 | 100 | -> | Plus |
3L | 17426139..17426205 | 233..297 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:26 Download gff for
BS16024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17419010..17419179 | 63..232 | 100 | -> | Plus |
arm_3L | 17419239..17419305 | 233..297 | 94 | | Plus |
arm_3L | 17418688..17418740 | 10..62 | 94 | -> | Plus |
BS16024.complete Sequence
305 bp assembled on 2007-05-07
GenBank Submission: FJ638026
> BS16024.complete
GAAGTTATCAGTCGACATGTTGGTTAAGCACATTGTCAAGCAGGGGCTTC
TGCTCAAGAACGCTGGCGCTTTGTCGCGTGCCGCTTACCACGGTGGACAT
GGTCCCCACTCCACCATGAACGATCTGCCCGTGCCCGCTGGAGACTGGAA
GGAGCAGCACAGCCAGAAGAACGCCAAGTACAATGCCGCGCTCATCACTG
GCATTCTCGTCCTGGCCGGCACTATTGGATTCGTGAAATCTTCTGGTATC
ATCCACTTCAACTACTACGCGCCCAAGAGCCTGGACTAAAAGCTTTCTAG
ACCAT
BS16024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-RA | 273 | CG7630-PA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-RA | 417 | CG7630-RA | 57..330 | 16..289 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17425909..17426081 | 62..234 | 865 | 100 | Plus |
3L | 28110227 | 3L | 17426139..17426195 | 233..289 | 285 | 100 | Plus |
3L | 28110227 | 3L | 17425594..17425640 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:05:49 has no hits.
BS16024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:43 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:12 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 40..329 | 10..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:12 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 63..328 | 22..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:43 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 40..329 | 10..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:54 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7630-RA | 63..328 | 22..287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:54 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17425600..17425640 | 22..62 | 100 | -> | Plus |
3L | 17425910..17426079 | 63..232 | 100 | -> | Plus |
3L | 17426139..17426193 | 233..287 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:12 Download gff for
BS16024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17418700..17418740 | 22..62 | 100 | -> | Plus |
arm_3L | 17419010..17419179 | 63..232 | 100 | -> | Plus |
arm_3L | 17419239..17419293 | 233..287 | 100 | | Plus |
BS16024.pep Sequence
Translation from 16 to 288
> BS16024.pep
MLVKHIVKQGLLLKNAGALSRAAYHGGHGPHSTMNDLPVPAGDWKEQHSQ
KNAKYNAALITGILVLAGTIGFVKSSGIIHFNYYAPKSLD*
BS16024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7630-PA | 90 | CG7630-PA | 1..90 | 1..90 | 473 | 100 | Plus |
gom-PA | 305 | CG6727-PA | 70..136 | 21..87 | 149 | 38.8 | Plus |