Clone BS16024 Report

Search the DGRC for BS16024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG7630-RA
Protein status:BS16024.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16024.3prime Sequence

303 bp (303 high quality bases) assembled on 2007-04-16

> BS16024.3prime
ATGGTCTAGAAAGCTTTTAGTCCAGGCTCTTGGGCGCGTAGTAGTTGAAG
TGGATGATACCAGAAGATTTCACGAATCCAATAGTGCCGGCCAGGACGAG
AATGCCAGTGATGAGCGCGGCATTGTACTTGGCGTTCTTCTGGCTGTGCT
GCTCCTTCCAGTCTCCAGCGGGCACGGGCAGATCGTTCATGGTGGAGTGG
GGACCATGTCCACCGTGGTAAGCGGCACGCGACAAAGCGCCAGCGTTCTT
GAGCAGAAGCCCCTGCTTGACAATGTGCTTAACCAACATGTCGACTGATA
ACT

BS16024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-PA 273 CG7630-RA 1..273 289..17 1365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-RA 417 CG7630-RA 57..330 290..17 1370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17425909..17426081 244..72 865 100 Minus
3L 28110227 3L 17426139..17426195 73..17 285 100 Minus
3L 28110227 3L 17425594..17425640 290..244 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:15:18 has no hits.

BS16024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:21 Download gff for BS16024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-PA 1..273 17..289 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:48 Download gff for BS16024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 51..340 9..296 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:10 Download gff for BS16024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 51..340 9..296 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:10 Download gff for BS16024.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17425588..17425640 244..296 94 -> Minus
3L 17425910..17426079 74..243 100 -> Minus
3L 17426139..17426205 9..73 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:48 Download gff for BS16024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17418688..17418740 244..296 94 -> Minus
arm_3L 17419010..17419179 74..243 100 -> Minus
arm_3L 17419239..17419305 9..73 94   Minus

BS16024.5prime Sequence

303 bp (303 high quality bases) assembled on 2007-04-16

> BS16024.5prime
GAAGTTATCAGTCGACATGTTGGTTAAGCACATTGTCAAGCAGGGGCTTC
TGCTCAAGAACGCTGGCGCTTTGTCGCGTGCCGCTTACCACGGTGGACAT
GGTCCCCACTCCACCATGAACGATCTGCCCGTGCCCGCTGGAGACTGGAA
GGAGCAGCACAGCCAGAAGAACGCCAAGTACAATGCCGCGCTCATCACTG
GCATTCTCGTCCTGGCCGGCACTATTGGATTCGTGAAATCTTCTGGTATC
ATCCACTTCAACTACTACGCGCCCAAGAGCCTGGACTAAAAGCTTTCTAG
ACC

BS16024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-PA 273 CG7630-RA 1..273 17..289 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-RA 417 CG7630-RA 57..330 16..289 1370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17425909..17426081 62..234 865 100 Plus
3L 28110227 3L 17426139..17426195 233..289 285 100 Plus
3L 28110227 3L 17425594..17425640 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:58:27 has no hits.

BS16024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:21 Download gff for BS16024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-PA 1..273 17..289 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:26 Download gff for BS16024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 51..340 10..297 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:05 Download gff for BS16024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 51..340 10..297 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:05 Download gff for BS16024.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17425588..17425640 10..62 94 -> Plus
3L 17425910..17426079 63..232 100 -> Plus
3L 17426139..17426205 233..297 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:26 Download gff for BS16024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17419010..17419179 63..232 100 -> Plus
arm_3L 17419239..17419305 233..297 94   Plus
arm_3L 17418688..17418740 10..62 94 -> Plus

BS16024.complete Sequence

305 bp assembled on 2007-05-07

GenBank Submission: FJ638026

> BS16024.complete
GAAGTTATCAGTCGACATGTTGGTTAAGCACATTGTCAAGCAGGGGCTTC
TGCTCAAGAACGCTGGCGCTTTGTCGCGTGCCGCTTACCACGGTGGACAT
GGTCCCCACTCCACCATGAACGATCTGCCCGTGCCCGCTGGAGACTGGAA
GGAGCAGCACAGCCAGAAGAACGCCAAGTACAATGCCGCGCTCATCACTG
GCATTCTCGTCCTGGCCGGCACTATTGGATTCGTGAAATCTTCTGGTATC
ATCCACTTCAACTACTACGCGCCCAAGAGCCTGGACTAAAAGCTTTCTAG
ACCAT

BS16024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-RA 273 CG7630-PA 1..273 17..289 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-RA 417 CG7630-RA 57..330 16..289 1370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17425909..17426081 62..234 865 100 Plus
3L 28110227 3L 17426139..17426195 233..289 285 100 Plus
3L 28110227 3L 17425594..17425640 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:05:49 has no hits.

BS16024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:43 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 1..273 17..289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:12 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 40..329 10..297 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:12 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 63..328 22..287 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:43 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 40..329 10..297 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:54 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7630-RA 63..328 22..287 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:54 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17425600..17425640 22..62 100 -> Plus
3L 17425910..17426079 63..232 100 -> Plus
3L 17426139..17426193 233..287 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:12 Download gff for BS16024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17418700..17418740 22..62 100 -> Plus
arm_3L 17419010..17419179 63..232 100 -> Plus
arm_3L 17419239..17419293 233..287 100   Plus

BS16024.pep Sequence

Translation from 16 to 288

> BS16024.pep
MLVKHIVKQGLLLKNAGALSRAAYHGGHGPHSTMNDLPVPAGDWKEQHSQ
KNAKYNAALITGILVLAGTIGFVKSSGIIHFNYYAPKSLD*

BS16024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7630-PA 90 CG7630-PA 1..90 1..90 473 100 Plus
gom-PA 305 CG6727-PA 70..136 21..87 149 38.8 Plus