Clone Sequence Records
BS16031.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16031.3prime
ATGGTCTAGAAAGCTTTCAGACCCTCCGCTTCTGCGTGGAAATGTAGAGG
ACATTGTTGCCGCGGATGAAGGCGTCGCCGTACTTGTTCTTCAGCTGCCC
ATTCACGTACTCCTCCGTCTGCTCCAGGCAGATGTTCATGTAGCCATCCA
GACAGGCCAGCACACCTCGATAGTCAACGCCGTTGTTCAGCTTTACGGCG
ACGGGGCGTCCGTGTATCTGATTGATGAACTGCGACAGGGCCTCTTTGCG
GGACATGTCGACTGATAACT
BS16031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 240 | CG9344-RA | 1..240 | 256..17 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..340 | 256..16 | 1205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977466 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 20977155..20977248 | 256..163 | 470 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 124..67 | 112 | 67.8 | Minus |
BS16031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:26 Download gff for
BS16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-PA | 1..240 | 17..256 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:52 Download gff for
BS16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 16..256 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:37:16 Download gff for
BS16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 16..256 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:37:16 Download gff for
BS16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 166..256 | 100 | -> | Minus |
2R | 20977317..20977466 | 16..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:52 Download gff for
BS16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864822..16864971 | 16..165 | 100 | | Minus |
arm_2R | 16864660..16864750 | 166..256 | 100 | -> | Minus |
BS16031.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16031.5prime
GAAGTTATCAGTCGACATGTCCCGCAAAGAGGCCCTGTCGCAGTTCATCA
ATCAGATACACGGACGCCCCGTCGCCGTAAAGCTGAACAACGGCGTTGAC
TATCGAGGTGTGCTGGCCTGTCTGGATGGCTACATGAACATCTGCCTGGA
GCAGACGGAGGAGTACGTGAATGGGCAGCTGAAGAACAAGTACGGCGACG
CCTTCATCCGCGGCAACAATGTCCTCTACATTTCCACGCAGAAGCGGAGG
GTCTGAAAGCTTTCTAGACC
BS16031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 240 | CG9344-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..340 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977466 | 106..257 | 760 | 100 | Plus |
2R | 25286936 | 2R | 20977155..20977248 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 149..206 | 112 | 67.8 | Plus |
BS16031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:26 Download gff for
BS16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:20 Download gff for
BS16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:47 Download gff for
BS16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:47 Download gff for
BS16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 17..107 | 100 | -> | Plus |
2R | 20977317..20977466 | 108..257 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:20 Download gff for
BS16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864660..16864750 | 17..107 | 100 | -> | Plus |
arm_2R | 16864822..16864971 | 108..257 | 100 | | Plus |
BS16031.complete Sequence
272 bp assembled on 2007-05-07
GenBank Submission: FJ638027
> BS16031.complete
GAAGTTATCAGTCGACATGTCCCGCAAAGAGGCCCTGTCGCAGTTCATCA
ATCAGATACACGGACGCCCCGTCGCCGTAAAGCTGAACAACGGCGTTGAC
TATCGAGGTGTGCTGGCCTGTCTGGATGGCTACATGAACATCTGCCTGGA
GCAGACGGAGGAGTACGTGAATGGGCAGCTGAAGAACAAGTACGGCGACG
CCTTCATCCGCGGCAACAATGTCCTCTACATTTCCACGCAGAAGCGGAGG
GTCTGAAAGCTTTCTAGACCAT
BS16031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 240 | CG9344-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..340 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977466 | 106..257 | 760 | 100 | Plus |
2R | 25286936 | 2R | 20977155..20977248 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 149..206 | 112 | 67.8 | Plus |
BS16031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:17 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:03 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:00 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..338 | 17..255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:17 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:15 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..338 | 17..255 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:15 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 17..107 | 100 | -> | Plus |
2R | 20977317..20977464 | 108..255 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:00 Download gff for
BS16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864660..16864750 | 17..107 | 100 | -> | Plus |
arm_2R | 16864822..16864969 | 108..255 | 100 | | Plus |
BS16031.pep Sequence
Translation from 16 to 255
> BS16031.pep
MSRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEY
VNGQLKNKYGDAFIRGNNVLYISTQKRRV*
BS16031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 79 | CG9344-PA | 1..79 | 1..79 | 412 | 100 | Plus |
SmF-PA | 88 | CG16792-PA | 12..74 | 10..72 | 161 | 49.2 | Plus |