Clone Sequence Records
BS16033.3prime Sequence
318 bp (318 high quality bases) assembled on 2007-04-16
> BS16033.3prime
ATGGTCTAGAAAGCTTTTAATGATGCACGACGACGGCGGGGGCGGCATGA
TGCACTGGAACCAATGGAACCACCGGCCTGACAGCATGCACCGCCACCAC
GGGCTTGTGGACGACGGGTGTGATGACCTTGACGGCTGCCGGATGATGAA
CAACATGGGAGTGCACCGAGTGGGCTCCATGATGGATGATGGGCGTGTGG
ACCACCGCCGGGTGCGCCACCACGGGTGCCACGGCCACCACGCCGGGATG
GGCGATAGCCTGAGAGGCGACGAAGGCGGCGAGCACGAACAGTACTTTGA
ACATGTCGACTGATAACT
BS16033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-PA | 288 | CG17298-RA | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-RA | 495 | CG17298-RA | 79..366 | 304..17 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21283780..21283921 | 158..17 | 710 | 100 | Minus |
3R | 32079331 | 3R | 21283584..21283717 | 292..159 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:15:51 has no hits.
BS16033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:27 Download gff for
BS16033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-PA | 1..288 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:55 Download gff for
BS16033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 13..309 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:09 Download gff for
BS16033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 13..309 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:09 Download gff for
BS16033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21283584..21283717 | 159..292 | 100 | -> | Minus |
3R | 21283780..21283925 | 13..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:55 Download gff for
BS16033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17109306..17109439 | 159..292 | 100 | -> | Minus |
arm_3R | 17109502..17109647 | 13..158 | 98 | | Minus |
BS16033.5prime Sequence
318 bp (318 high quality bases) assembled on 2007-04-16
> BS16033.5prime
GAAGTTATCAGTCGACATGTTCAAAGTACTGTTCGTGCTCGCCGCCTTCG
TCGCCTCTCAGGCTATCGCCCATCCCGGCGTGGTGGCCGTGGCACCCGTG
GTGGCGCACCCGGCGGTGGTCCACACGCCCATCATCCATCATGGAGCCCA
CTCGGTGCACTCCCATGTTGTTCATCATCCGGCAGCCGTCAAGGTCATCA
CACCCGTCGTCCACAAGCCCGTGGTGGCGGTGCATGCTGTCAGGCCGGTG
GTTCCATTGGTTCCAGTGCATCATGCCGCCCCCGCCGTCGTCGTGCATCA
TTAAAAGCTTTCTAGACC
BS16033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-PA | 288 | CG17298-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-RA | 495 | CG17298-RA | 79..366 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21283780..21283921 | 163..304 | 710 | 100 | Plus |
3R | 32079331 | 3R | 21283584..21283717 | 29..162 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:29:49 has no hits.
BS16033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:27 Download gff for
BS16033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-PA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:21 Download gff for
BS16033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 12..308 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:41:01 Download gff for
BS16033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 12..308 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:41:01 Download gff for
BS16033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21283584..21283717 | 29..162 | 100 | -> | Plus |
3R | 21283780..21283925 | 163..308 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:21 Download gff for
BS16033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17109306..17109439 | 29..162 | 100 | -> | Plus |
arm_3R | 17109502..17109647 | 163..308 | 98 | | Plus |
BS16033.complete Sequence
320 bp assembled on 2007-05-07
GenBank Submission: FJ638029
> BS16033.complete
GAAGTTATCAGTCGACATGTTCAAAGTACTGTTCGTGCTCGCCGCCTTCG
TCGCCTCTCAGGCTATCGCCCATCCCGGCGTGGTGGCCGTGGCACCCGTG
GTGGCGCACCCGGCGGTGGTCCACACGCCCATCATCCATCATGGAGCCCA
CTCGGTGCACTCCCATGTTGTTCATCATCCGGCAGCCGTCAAGGTCATCA
CACCCGTCGTCCACAAGCCCGTGGTGGCGGTGCATGCTGTCAGGCCGGTG
GTTCCATTGGTTCCAGTGCATCATGCCGCCCCCGCCGTCGTCGTGCATCA
TTAAAAGCTTTCTAGACCAT
BS16033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-RA | 288 | CG17298-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-RA | 495 | CG17298-RA | 79..366 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21283780..21283921 | 163..304 | 710 | 100 | Plus |
3R | 32079331 | 3R | 21283584..21283717 | 29..162 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:10 has no hits.
BS16033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:27 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:02 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 12..308 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:12 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 84..364 | 22..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:27 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 74..370 | 12..308 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:59 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17298-RA | 84..364 | 22..302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:59 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21283579..21283717 | 22..162 | 97 | -> | Plus |
3R | 21283780..21283919 | 163..302 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:12 Download gff for
BS16033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17109301..17109439 | 22..162 | 97 | -> | Plus |
arm_3R | 17109502..17109641 | 163..302 | 100 | | Plus |
BS16033.pep Sequence
Translation from 16 to 303
> BS16033.pep
MFKVLFVLAAFVASQAIAHPGVVAVAPVVAHPAVVHTPIIHHGAHSVHSH
VVHHPAAVKVITPVVHKPVVAVHAVRPVVPLVPVHHAAPAVVVHH*
BS16033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17298-PA | 95 | CG17298-PA | 1..95 | 1..95 | 495 | 100 | Plus |