Clone Sequence Records
BS16034.3prime Sequence
312 bp (312 high quality bases) assembled on 2007-04-16
> BS16034.3prime
ATGGTCTAGAAAGCTTTCACTCTTCAACCTTCGGATGGAAGCCGGTTGCA
TCTGCGGTGTAAGTCACGCGAATTTGCTTGCCATCTTCGCCGGGAAGGAA
GTATTCGCCCTGGATGCCGTTCACATTGCCTTGAGCTTTCACTTGGATCC
CATTGCTGACCGTGATCTCATGCTGGAACTGCCCAGCTCCATCCAGGTTC
TGGCGGTTCTCCGACTTCAGAAGTTGCGCCTGCAGATCCTCCTCACTGCA
GCTGGCCAAAACGACGAAAAGGGCAAAGATAAGGCTATATTTCAGCATGT
CGACTGATAACT
BS16034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30163-PA | 282 | CG30163-RA | 1..282 | 298..17 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..300 | 298..17 | 1410 | 100 | Minus |
Cpr60D-RA | 494 | CG30163-RA | 105..386 | 298..17 | 1410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662963..24663232 | 17..286 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:39:06 has no hits.
BS16034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:28 Download gff for
BS16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30163-PA | 1..282 | 17..298 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:24 Download gff for
BS16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:26 Download gff for
BS16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:26 Download gff for
BS16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662963..24663232 | 17..286 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:24 Download gff for
BS16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550486..20550755 | 17..286 | 100 | <- | Plus |
BS16034.5prime Sequence
312 bp (312 high quality bases) assembled on 2007-04-16
> BS16034.5prime
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGTGAAA
GCTTTCTAGACC
BS16034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30163-PA | 282 | CG30163-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..300 | 17..298 | 1410 | 100 | Plus |
Cpr60D-RA | 494 | CG30163-RA | 105..386 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662963..24663232 | 298..29 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:14:00 has no hits.
BS16034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:28 Download gff for
BS16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30163-PA | 1..282 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:16 Download gff for
BS16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:52 Download gff for
BS16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:52 Download gff for
BS16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662963..24663232 | 29..298 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:16 Download gff for
BS16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550486..20550755 | 29..298 | 100 | <- | Minus |
BS16034.complete Sequence
314 bp assembled on 2007-05-07
GenBank Submission: FJ638030
> BS16034.complete
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGTGAAA
GCTTTCTAGACCAT
BS16034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 282 | CG30163-PB | 1..282 | 17..298 | 1410 | 100 | Plus |
Cpr60D-RA | 282 | CG30163-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..300 | 17..298 | 1410 | 100 | Plus |
Cpr60D-RA | 494 | CG30163-RA | 105..386 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662963..24663232 | 298..29 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:35 has no hits.
BS16034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:25 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 1..282 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:34 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:15 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..385 | 17..297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:25 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..386 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:00 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..385 | 17..297 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:00 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662964..24663232 | 29..297 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:15 Download gff for
BS16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550487..20550755 | 29..297 | 100 | <- | Minus |
BS16034.pep Sequence
Translation from 16 to 297
> BS16034.pep
MLKYSLIFALFVVLASCSEEDLQAQLLKSENRQNLDGAGQFQHEITVSNG
IQVKAQGNVNGIQGEYFLPGEDGKQIRVTYTADATGFHPKVEE*
BS16034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-PB | 93 | CG30163-PB | 1..93 | 1..93 | 475 | 100 | Plus |
Cpr60D-PA | 93 | CG30163-PA | 1..93 | 1..93 | 475 | 100 | Plus |
Edg78E-PB | 122 | CG7673-PB | 2..87 | 4..89 | 150 | 32.6 | Plus |
Edg78E-PA | 122 | CG7673-PA | 2..87 | 4..89 | 150 | 32.6 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 1..91 | 1..90 | 134 | 34.1 | Plus |