Clone BS16034 Report

Search the DGRC for BS16034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCpr60D-RA
Protein status:BS16034.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16034.3prime Sequence

312 bp (312 high quality bases) assembled on 2007-04-16

> BS16034.3prime
ATGGTCTAGAAAGCTTTCACTCTTCAACCTTCGGATGGAAGCCGGTTGCA
TCTGCGGTGTAAGTCACGCGAATTTGCTTGCCATCTTCGCCGGGAAGGAA
GTATTCGCCCTGGATGCCGTTCACATTGCCTTGAGCTTTCACTTGGATCC
CATTGCTGACCGTGATCTCATGCTGGAACTGCCCAGCTCCATCCAGGTTC
TGGCGGTTCTCCGACTTCAGAAGTTGCGCCTGCAGATCCTCCTCACTGCA
GCTGGCCAAAACGACGAAAAGGGCAAAGATAAGGCTATATTTCAGCATGT
CGACTGATAACT

BS16034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30163-PA 282 CG30163-RA 1..282 298..17 1410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..300 298..17 1410 100 Minus
Cpr60D-RA 494 CG30163-RA 105..386 298..17 1410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662963..24663232 17..286 1350 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:39:06 has no hits.

BS16034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:28 Download gff for BS16034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30163-PA 1..282 17..298 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:24 Download gff for BS16034.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:26 Download gff for BS16034.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:26 Download gff for BS16034.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24662963..24663232 17..286 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:24 Download gff for BS16034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550486..20550755 17..286 100 <- Plus

BS16034.5prime Sequence

312 bp (312 high quality bases) assembled on 2007-04-16

> BS16034.5prime
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGTGAAA
GCTTTCTAGACC

BS16034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30163-PA 282 CG30163-RA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..300 17..298 1410 100 Plus
Cpr60D-RA 494 CG30163-RA 105..386 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662963..24663232 298..29 1350 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:14:00 has no hits.

BS16034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:28 Download gff for BS16034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30163-PA 1..282 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:16 Download gff for BS16034.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:52 Download gff for BS16034.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:52 Download gff for BS16034.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24662963..24663232 29..298 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:16 Download gff for BS16034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550486..20550755 29..298 100 <- Minus

BS16034.complete Sequence

314 bp assembled on 2007-05-07

GenBank Submission: FJ638030

> BS16034.complete
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGTGAAA
GCTTTCTAGACCAT

BS16034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 282 CG30163-PB 1..282 17..298 1410 100 Plus
Cpr60D-RA 282 CG30163-PA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..300 17..298 1410 100 Plus
Cpr60D-RA 494 CG30163-RA 105..386 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662963..24663232 298..29 1350 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:06:35 has no hits.

BS16034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:25 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:34 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:15 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..385 17..297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:25 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..386 17..298 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:00 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..385 17..297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:00 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24662964..24663232 29..297 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:15 Download gff for BS16034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550487..20550755 29..297 100 <- Minus

BS16034.pep Sequence

Translation from 16 to 297

> BS16034.pep
MLKYSLIFALFVVLASCSEEDLQAQLLKSENRQNLDGAGQFQHEITVSNG
IQVKAQGNVNGIQGEYFLPGEDGKQIRVTYTADATGFHPKVEE*

BS16034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-PB 93 CG30163-PB 1..93 1..93 475 100 Plus
Cpr60D-PA 93 CG30163-PA 1..93 1..93 475 100 Plus
Edg78E-PB 122 CG7673-PB 2..87 4..89 150 32.6 Plus
Edg78E-PA 122 CG7673-PA 2..87 4..89 150 32.6 Plus
Cpr78Cc-PA 119 CG7658-PA 1..91 1..90 134 34.1 Plus