Clone Sequence Records
BS16037.3prime Sequence
309 bp (309 high quality bases) assembled on 2007-04-16
> BS16037.3prime
ATGGTCTAGAAAGCTTTTACTGTTCCTTGGTTTCACGCAGACGACGGACG
GCGGATCGCACGGAGGCGGCGGCGGTGGTGGAGTACACCCAGGCGCCACC
GGCGACGGTCCTTTTGCAGCGCTTGCAGGACCAGATGCCCACAACGGCGC
GCTTCATGGAGTCCTTGCCGCAGAAGGAGCAAGTGTACTTGCTGTGCTGG
GTGATTTCCATCTTCTTGACCATCTTACGCAGGGAGGCACCATAACGGGT
ACCATATTTACCAACGATTCCAACCTTCTTGGTGCGCTTGGCCATGTCGA
CTGATAACT
BS16037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5827-PA | 279 | RpL37A-RA | 1..279 | 295..17 | 1395 | 100 | Minus |
CG5827-PB | 279 | RpL37A-RB | 1..279 | 295..17 | 1395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL37A-RA | 511 | CG5827-RA | 84..363 | 295..16 | 1400 | 100 | Minus |
RpL37A-RB | 583 | CG5827-RB | 156..435 | 295..16 | 1400 | 100 | Minus |
RpL37A-RC | 705 | CG5827-RC | 127..406 | 295..16 | 1400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5071607..5071756 | 165..16 | 750 | 100 | Minus |
2L | 23513712 | 2L | 5071226..5071356 | 293..163 | 655 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 894..927 | 85..52 | 107 | 79.4 | Minus |
BS16037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:29 Download gff for
BS16037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5827-PB | 1..279 | 17..295 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:29 Download gff for
BS16037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 120..406 | 16..303 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:50 Download gff for
BS16037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 120..406 | 16..303 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:50 Download gff for
BS16037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5071214..5071355 | 164..307 | 96 | -> | Minus |
2L | 5071609..5071756 | 16..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:29 Download gff for
BS16037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5071214..5071355 | 164..307 | 96 | -> | Minus |
arm_2L | 5071609..5071756 | 16..163 | 100 | | Minus |
BS16037.5prime Sequence
309 bp (309 high quality bases) assembled on 2007-04-16
> BS16037.5prime
GAAGTTATCAGTCGACATGGCCAAGCGCACCAAGAAGGTTGGAATCGTTG
GTAAATATGGTACCCGTTATGGTGCCTCCCTGCGTAAGATGGTCAAGAAG
ATGGAAATCACCCAGCACAGCAAGTACACTTGCTCCTTCTGCGGCAAGGA
CTCCATGAAGCGCGCCGTTGTGGGCATCTGGTCCTGCAAGCGCTGCAAAA
GGACCGTCGCCGGTGGCGCCTGGGTGTACTCCACCACCGCCGCCGCCTCC
GTGCGATCCGCCGTCCGTCGTCTGCGTGAAACCAAGGAACAGTAAAAGCT
TTCTAGACC
BS16037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5827-PA | 279 | RpL37A-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
CG5827-PB | 279 | RpL37A-RB | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL37A-RA | 511 | CG5827-RA | 84..363 | 17..296 | 1400 | 100 | Plus |
RpL37A-RB | 583 | CG5827-RB | 156..435 | 17..296 | 1400 | 100 | Plus |
RpL37A-RC | 705 | CG5827-RC | 127..406 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5071607..5071756 | 147..296 | 750 | 100 | Plus |
2L | 23513712 | 2L | 5071226..5071356 | 19..149 | 655 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 894..927 | 227..260 | 107 | 79.4 | Plus |
BS16037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:30 Download gff for
BS16037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5827-PB | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:57 Download gff for
BS16037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 120..406 | 9..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:29 Download gff for
BS16037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 120..406 | 9..296 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:29 Download gff for
BS16037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5071609..5071756 | 149..296 | 100 | | Plus |
2L | 5071214..5071355 | 5..148 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:57 Download gff for
BS16037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5071214..5071355 | 5..148 | 96 | -> | Plus |
arm_2L | 5071609..5071756 | 149..296 | 100 | | Plus |
BS16037.complete Sequence
311 bp assembled on 2007-05-07
GenBank Submission: FJ638031
> BS16037.complete
GAAGTTATCAGTCGACATGGCCAAGCGCACCAAGAAGGTTGGAATCGTTG
GTAAATATGGTACCCGTTATGGTGCCTCCCTGCGTAAGATGGTCAAGAAG
ATGGAAATCACCCAGCACAGCAAGTACACTTGCTCCTTCTGCGGCAAGGA
CTCCATGAAGCGCGCCGTTGTGGGCATCTGGTCCTGCAAGCGCTGCAAAA
GGACCGTCGCCGGTGGCGCCTGGGTGTACTCCACCACCGCCGCCGCCTCC
GTGCGATCCGCCGTCCGTCGTCTGCGTGAAACCAAGGAACAGTAAAAGCT
TTCTAGACCAT
BS16037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL37A-RA | 279 | CG5827-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
RpL37A-RB | 279 | CG5827-PB | 1..279 | 17..295 | 1395 | 100 | Plus |
RpL37A-RC | 279 | CG5827-PC | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL37A-RA | 511 | CG5827-RA | 84..363 | 17..296 | 1400 | 100 | Plus |
RpL37A-RB | 583 | CG5827-RB | 156..435 | 17..296 | 1400 | 100 | Plus |
RpL37A-RC | 705 | CG5827-RC | 127..406 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5071607..5071756 | 147..296 | 750 | 100 | Plus |
2L | 23513712 | 2L | 5071226..5071356 | 19..149 | 655 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 894..927 | 227..260 | 107 | 79.4 | Plus |
BS16037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:44 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RB | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:12 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RB | 111..397 | 9..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:42 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 127..403 | 17..293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:44 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RB | 111..397 | 9..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:24 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL37A-RC | 127..403 | 17..293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:24 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5071225..5071355 | 17..148 | 99 | -> | Plus |
2L | 5071609..5071753 | 149..293 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:42 Download gff for
BS16037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5071225..5071355 | 17..148 | 99 | -> | Plus |
arm_2L | 5071609..5071753 | 149..293 | 100 | | Plus |
BS16037.pep Sequence
Translation from 16 to 294
> BS16037.pep
MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRA
VVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKEQ*
BS16037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL37A-PA | 92 | CG5827-PA | 1..92 | 1..92 | 478 | 100 | Plus |
RpL37A-PB | 92 | CG5827-PB | 1..92 | 1..92 | 478 | 100 | Plus |
RpL37A-PC | 92 | CG5827-PC | 1..92 | 1..92 | 478 | 100 | Plus |