Clone BS16038 Report

Search the DGRC for BS16038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG12519-RA
Protein status:BS16038.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16038.3prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS16038.3prime
ATGGTCTAGAAAGCTTTTACATAAGGAGCGGTGCAGATGGAACGGCGTAG
CTCAGTGGTGCGGAGTAAGCCAAAGGCGAGGAGTAGGCCAGTGGTGCAGC
TAGAGGAGTAGCCGCGTACTTCGCCACCACAGGAGCAGCCAATGGAGCAG
CAGCGTACTTGGCCACCACAGGAGCGGCAACGGGAGCAATCACAGGAGCA
GCGGCGATTCCATTGTAGTTCCTGGCGATAACCTGGCTACTGGTGGCGGT
CACAACTGGAGCGGGAGCAGCTACCACGGCAGCAGGAGCTGAGTAAGCCA
GAGGAGCAGAGTAAGCCAGAGGAGCAGTGTAAGCAAGGGGAGCACCCAGA
AGTCCAGGCTTGGCAGCAGCGCAGGCAACGATAGCCAGAATAACAACGGC
GGATTTGAACATGTCGACTGATAACT

BS16038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PA 396 CG12519-RA 1..392 412..21 1960 100 Minus
CG18294-PA 426 CG18294-RA 1..299 412..114 1445 99.3 Minus
CG14096-PA 369 CG14096-RA 1..269 412..144 1295 99.2 Minus
CG32213-PA 465 CG32213-RA 154..300 316..170 585 95.9 Minus
CG32208-PA 465 825-Oak-RA 154..300 316..170 585 95.9 Minus
CG32214-PA 426 CG32214-RA 154..300 316..170 585 95.9 Minus
CG33255-PA 768 CG33255-RA 229..387 376..218 570 94.3 Minus
CG32213-PA 465 CG32213-RA 307..437 175..45 480 94.6 Minus
CG32208-PA 465 825-Oak-RA 307..437 175..45 480 94.6 Minus
CG32214-PA 426 CG32214-RA 291..400 152..43 450 96.3 Minus
CG32213-PA 465 CG32213-RA 107..186 381..302 375 98.7 Minus
CG32208-PA 465 825-Oak-RA 107..186 381..302 375 98.7 Minus
CG32214-PA 426 CG32214-RA 107..186 381..302 375 98.7 Minus
CG18294-PA 426 CG18294-RA 274..338 178..114 275 96.9 Minus
CG32207-PA 255 CG32207-RA 182..251 90..21 275 95.7 Minus
CG33255-PA 768 CG33255-RA 566..645 270..191 250 92.5 Minus
CG32212-PA 336 CG32212-RA 174..258 230..146 225 90.5 Minus
CG32213-PA 465 CG32213-RA 291..347 152..96 210 94.7 Minus
CG32208-PA 465 825-Oak-RA 291..347 152..96 210 94.7 Minus
CG18294-PA 426 CG18294-RA 316..353 175..138 165 97.3 Minus
CG33255-PA 768 CG33255-RA 637..666 175..146 150 100 Minus
CG32212-PA 336 CG32212-RA 64..113 349..300 150 92 Minus
CG33255-PA 768 CG33255-RA 140..172 246..278 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..449 412..16 1970 99.7 Minus
CG12519-RA 507 CG12519-RA 53..449 412..16 1970 99.7 Minus
CG18294-RA 507 CG18294-RA 55..362 412..105 1480 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472994 400..16 1910 99.7 Minus
3L 28110227 3L 19475162..19475457 105..400 1420 98.6 Plus
3L 28110227 3L 19466706..19466962 144..400 1255 99.2 Plus
3L 28110227 3L 19471757..19472096 45..390 1060 87.7 Plus
3L 28110227 3L 19475971..19476310 390..45 1060 87.7 Minus
3L 28110227 3L 19478373..19478568 380..185 740 91.8 Minus
3L 28110227 3L 19423849..19424044 380..185 725 91.3 Minus
3L 28110227 3L 19467481..19467687 390..166 700 88.4 Minus
3L 28110227 3L 19488045..19488278 380..138 610 84.4 Minus
3L 28110227 3L 19467674..19467810 152..16 535 92.7 Minus
3L 28110227 3L 19422975..19423224 16..282 380 77.9 Plus
3L 28110227 3L 19486798..19486900 16..119 365 92.3 Plus
3L 28110227 3L 19477668..19477760 16..108 345 91.4 Plus
3L 28110227 3L 19475123..19475206 105..188 315 91.7 Plus
3L 28110227 3L 19424757..19424836 270..191 310 92.5 Minus
3L 28110227 3L 19471847..19471903 96..152 240 94.7 Plus
3L 28110227 3L 19476164..19476220 152..96 240 94.7 Minus
3L 28110227 3L 19464433..19464518 186..271 220 83.7 Plus
3L 28110227 3L 19475117..19475167 138..188 180 90.2 Plus
Blast to na_te.dros performed 2015-02-10 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 252..327 147 69.7 Plus

BS16038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:30 Download gff for BS16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-PA 1..396 17..412 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:01 Download gff for BS16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..455 7..422 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:56 Download gff for BS16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..455 7..422 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:56 Download gff for BS16038.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19473000 7..400 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:01 Download gff for BS16038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466100 7..400 98   Minus

BS16038.5prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS16038.5prime
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCTAAAAGCTTTCTAGACC

BS16038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PA 396 CG12519-RA 1..396 17..412 1980 100 Plus
CG18294-PA 426 CG18294-RA 1..299 17..315 1445 99.3 Plus
CG14096-PA 369 CG14096-RA 1..269 17..285 1295 99.2 Plus
CG32213-PA 465 CG32213-RA 154..300 113..259 585 95.9 Plus
CG32208-PA 465 825-Oak-RA 154..300 113..259 585 95.9 Plus
CG32214-PA 426 CG32214-RA 154..300 113..259 585 95.9 Plus
CG33255-PA 768 CG33255-RA 229..387 53..211 570 94.3 Plus
CG32213-PA 465 CG32213-RA 307..437 254..384 480 94.6 Plus
CG32208-PA 465 825-Oak-RA 307..437 254..384 480 94.6 Plus
CG32214-PA 426 CG32214-RA 291..400 277..386 450 96.3 Plus
CG32213-PA 465 CG32213-RA 107..186 48..127 375 98.7 Plus
CG32208-PA 465 825-Oak-RA 107..186 48..127 375 98.7 Plus
CG32214-PA 426 CG32214-RA 107..186 48..127 375 98.7 Plus
CG32207-PA 255 CG32207-RA 182..255 339..412 295 95.9 Plus
CG18294-PA 426 CG18294-RA 274..338 251..315 275 96.9 Plus
CG33255-PA 768 CG33255-RA 566..645 159..238 250 92.5 Plus
CG32212-PA 336 CG32212-RA 174..258 199..283 225 90.5 Plus
CG32213-PA 465 CG32213-RA 291..347 277..333 210 94.7 Plus
CG32208-PA 465 825-Oak-RA 291..347 277..333 210 94.7 Plus
CG18294-PA 426 CG18294-RA 316..353 254..291 165 97.3 Plus
CG33255-PA 768 CG33255-RA 637..666 254..283 150 100 Plus
CG32212-PA 336 CG32212-RA 64..113 80..129 150 92 Plus
CG33255-PA 768 CG33255-RA 140..172 183..151 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..449 17..413 1985 100 Plus
CG12519-RA 507 CG12519-RA 53..449 17..413 1985 100 Plus
CG18294-RA 507 CG18294-RA 55..362 17..324 1480 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472994 29..413 1925 100 Plus
3L 28110227 3L 19475162..19475457 324..29 1420 98.6 Minus
3L 28110227 3L 19466706..19466962 285..29 1255 99.2 Minus
3L 28110227 3L 19471728..19472096 413..39 1070 86.3 Minus
3L 28110227 3L 19475971..19476339 39..413 1070 86.3 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488278 49..291 610 84.4 Plus
3L 28110227 3L 19467674..19467810 277..413 550 93.4 Plus
3L 28110227 3L 19422975..19423224 413..147 395 78.3 Minus
3L 28110227 3L 19486798..19486900 413..310 365 92.3 Minus
3L 28110227 3L 19477668..19477760 413..321 360 92.5 Minus
3L 28110227 3L 19475123..19475206 324..241 315 91.7 Minus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471847..19471903 333..277 240 94.7 Minus
3L 28110227 3L 19476164..19476220 277..333 240 94.7 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475117..19475167 291..241 180 90.2 Minus
Blast to na_te.dros performed 2015-02-10 20:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BS16038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:31 Download gff for BS16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-PA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:02 Download gff for BS16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..455 7..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:57 Download gff for BS16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..455 7..422 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:57 Download gff for BS16038.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19473000 29..422 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:02 Download gff for BS16038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466100 29..422 98   Plus

BS16038.complete Sequence

428 bp assembled on 2007-05-07

GenBank Submission: FJ638032

> BS16038.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCTAAAAGCTTTCTAGACCAT

BS16038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 396 CG12519-PB 1..396 17..412 1980 100 Plus
CG12519-RA 396 CG12519-PA 1..396 17..412 1980 100 Plus
CG18294-RA 426 CG18294-PA 1..308 17..324 1480 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..449 17..413 1985 100 Plus
CG12519-RA 507 CG12519-RA 53..449 17..413 1985 100 Plus
CG18294-RA 507 CG18294-RA 55..362 17..324 1480 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472994 29..413 1925 100 Plus
3L 28110227 3L 19475162..19475457 324..29 1420 98.6 Minus
3L 28110227 3L 19466706..19466962 285..29 1255 99.2 Minus
3L 28110227 3L 19471728..19472096 413..39 1070 86.3 Minus
3L 28110227 3L 19475971..19476339 39..413 1070 86.3 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488278 49..291 610 84.4 Plus
3L 28110227 3L 19467674..19467810 277..413 550 93.4 Plus
3L 28110227 3L 19422975..19423224 413..147 395 78.3 Minus
3L 28110227 3L 19486798..19486900 413..310 365 92.3 Minus
3L 28110227 3L 19477668..19477760 413..321 360 92.5 Minus
3L 28110227 3L 19475123..19475206 324..241 315 91.7 Minus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471847..19471903 333..277 240 94.7 Minus
3L 28110227 3L 19476164..19476220 277..333 240 94.7 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475117..19475167 291..241 180 90.2 Minus
Blast to na_te.dros performed 2014-11-26 15:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BS16038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:26 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:36 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 45..453 7..422 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:24 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 58..446 22..410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:26 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 45..453 7..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:21 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 58..446 22..410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:21 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19472991 29..410 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:24 Download gff for BS16038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466091 29..410 100   Plus

BS16038.pep Sequence

Translation from 16 to 411

> BS16038.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
ATPLAAPLAYSSPLAYSAPLSYAVPSAPLLI*

BS16038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PB 131 CG12519-PB 1..131 1..131 633 100 Plus
CG12519-PA 131 CG12519-PA 1..131 1..131 633 100 Plus
CG18294-PA 141 CG18294-PA 1..141 1..131 560 85.8 Plus
825-Oak-PB 129 CG32208-PB 1..129 1..131 528 85.9 Plus
CG32213-PB 129 CG32213-PB 1..129 1..131 525 85.2 Plus