Clone Sequence Records
BS16038.3prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS16038.3prime
ATGGTCTAGAAAGCTTTTACATAAGGAGCGGTGCAGATGGAACGGCGTAG
CTCAGTGGTGCGGAGTAAGCCAAAGGCGAGGAGTAGGCCAGTGGTGCAGC
TAGAGGAGTAGCCGCGTACTTCGCCACCACAGGAGCAGCCAATGGAGCAG
CAGCGTACTTGGCCACCACAGGAGCGGCAACGGGAGCAATCACAGGAGCA
GCGGCGATTCCATTGTAGTTCCTGGCGATAACCTGGCTACTGGTGGCGGT
CACAACTGGAGCGGGAGCAGCTACCACGGCAGCAGGAGCTGAGTAAGCCA
GAGGAGCAGAGTAAGCCAGAGGAGCAGTGTAAGCAAGGGGAGCACCCAGA
AGTCCAGGCTTGGCAGCAGCGCAGGCAACGATAGCCAGAATAACAACGGC
GGATTTGAACATGTCGACTGATAACT
BS16038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PA | 396 | CG12519-RA | 1..392 | 412..21 | 1960 | 100 | Minus |
CG18294-PA | 426 | CG18294-RA | 1..299 | 412..114 | 1445 | 99.3 | Minus |
CG14096-PA | 369 | CG14096-RA | 1..269 | 412..144 | 1295 | 99.2 | Minus |
CG32213-PA | 465 | CG32213-RA | 154..300 | 316..170 | 585 | 95.9 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 154..300 | 316..170 | 585 | 95.9 | Minus |
CG32214-PA | 426 | CG32214-RA | 154..300 | 316..170 | 585 | 95.9 | Minus |
CG33255-PA | 768 | CG33255-RA | 229..387 | 376..218 | 570 | 94.3 | Minus |
CG32213-PA | 465 | CG32213-RA | 307..437 | 175..45 | 480 | 94.6 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 307..437 | 175..45 | 480 | 94.6 | Minus |
CG32214-PA | 426 | CG32214-RA | 291..400 | 152..43 | 450 | 96.3 | Minus |
CG32213-PA | 465 | CG32213-RA | 107..186 | 381..302 | 375 | 98.7 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 107..186 | 381..302 | 375 | 98.7 | Minus |
CG32214-PA | 426 | CG32214-RA | 107..186 | 381..302 | 375 | 98.7 | Minus |
CG18294-PA | 426 | CG18294-RA | 274..338 | 178..114 | 275 | 96.9 | Minus |
CG32207-PA | 255 | CG32207-RA | 182..251 | 90..21 | 275 | 95.7 | Minus |
CG33255-PA | 768 | CG33255-RA | 566..645 | 270..191 | 250 | 92.5 | Minus |
CG32212-PA | 336 | CG32212-RA | 174..258 | 230..146 | 225 | 90.5 | Minus |
CG32213-PA | 465 | CG32213-RA | 291..347 | 152..96 | 210 | 94.7 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 291..347 | 152..96 | 210 | 94.7 | Minus |
CG18294-PA | 426 | CG18294-RA | 316..353 | 175..138 | 165 | 97.3 | Minus |
CG33255-PA | 768 | CG33255-RA | 637..666 | 175..146 | 150 | 100 | Minus |
CG32212-PA | 336 | CG32212-RA | 64..113 | 349..300 | 150 | 92 | Minus |
CG33255-PA | 768 | CG33255-RA | 140..172 | 246..278 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..449 | 412..16 | 1970 | 99.7 | Minus |
CG12519-RA | 507 | CG12519-RA | 53..449 | 412..16 | 1970 | 99.7 | Minus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 412..105 | 1480 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472994 | 400..16 | 1910 | 99.7 | Minus |
3L | 28110227 | 3L | 19475162..19475457 | 105..400 | 1420 | 98.6 | Plus |
3L | 28110227 | 3L | 19466706..19466962 | 144..400 | 1255 | 99.2 | Plus |
3L | 28110227 | 3L | 19471757..19472096 | 45..390 | 1060 | 87.7 | Plus |
3L | 28110227 | 3L | 19475971..19476310 | 390..45 | 1060 | 87.7 | Minus |
3L | 28110227 | 3L | 19478373..19478568 | 380..185 | 740 | 91.8 | Minus |
3L | 28110227 | 3L | 19423849..19424044 | 380..185 | 725 | 91.3 | Minus |
3L | 28110227 | 3L | 19467481..19467687 | 390..166 | 700 | 88.4 | Minus |
3L | 28110227 | 3L | 19488045..19488278 | 380..138 | 610 | 84.4 | Minus |
3L | 28110227 | 3L | 19467674..19467810 | 152..16 | 535 | 92.7 | Minus |
3L | 28110227 | 3L | 19422975..19423224 | 16..282 | 380 | 77.9 | Plus |
3L | 28110227 | 3L | 19486798..19486900 | 16..119 | 365 | 92.3 | Plus |
3L | 28110227 | 3L | 19477668..19477760 | 16..108 | 345 | 91.4 | Plus |
3L | 28110227 | 3L | 19475123..19475206 | 105..188 | 315 | 91.7 | Plus |
3L | 28110227 | 3L | 19424757..19424836 | 270..191 | 310 | 92.5 | Minus |
3L | 28110227 | 3L | 19471847..19471903 | 96..152 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19476164..19476220 | 152..96 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19464433..19464518 | 186..271 | 220 | 83.7 | Plus |
3L | 28110227 | 3L | 19475117..19475167 | 138..188 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2015-02-10 20:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 252..327 | 147 | 69.7 | Plus |
BS16038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:30 Download gff for
BS16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-PA | 1..396 | 17..412 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:01 Download gff for
BS16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..455 | 7..422 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:56 Download gff for
BS16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..455 | 7..422 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:56 Download gff for
BS16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19473000 | 7..400 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:01 Download gff for
BS16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466100 | 7..400 | 98 | | Minus |
BS16038.5prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS16038.5prime
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCTAAAAGCTTTCTAGACC
BS16038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PA | 396 | CG12519-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
CG18294-PA | 426 | CG18294-RA | 1..299 | 17..315 | 1445 | 99.3 | Plus |
CG14096-PA | 369 | CG14096-RA | 1..269 | 17..285 | 1295 | 99.2 | Plus |
CG32213-PA | 465 | CG32213-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG32214-PA | 426 | CG32214-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG33255-PA | 768 | CG33255-RA | 229..387 | 53..211 | 570 | 94.3 | Plus |
CG32213-PA | 465 | CG32213-RA | 307..437 | 254..384 | 480 | 94.6 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 307..437 | 254..384 | 480 | 94.6 | Plus |
CG32214-PA | 426 | CG32214-RA | 291..400 | 277..386 | 450 | 96.3 | Plus |
CG32213-PA | 465 | CG32213-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32214-PA | 426 | CG32214-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32207-PA | 255 | CG32207-RA | 182..255 | 339..412 | 295 | 95.9 | Plus |
CG18294-PA | 426 | CG18294-RA | 274..338 | 251..315 | 275 | 96.9 | Plus |
CG33255-PA | 768 | CG33255-RA | 566..645 | 159..238 | 250 | 92.5 | Plus |
CG32212-PA | 336 | CG32212-RA | 174..258 | 199..283 | 225 | 90.5 | Plus |
CG32213-PA | 465 | CG32213-RA | 291..347 | 277..333 | 210 | 94.7 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 291..347 | 277..333 | 210 | 94.7 | Plus |
CG18294-PA | 426 | CG18294-RA | 316..353 | 254..291 | 165 | 97.3 | Plus |
CG33255-PA | 768 | CG33255-RA | 637..666 | 254..283 | 150 | 100 | Plus |
CG32212-PA | 336 | CG32212-RA | 64..113 | 80..129 | 150 | 92 | Plus |
CG33255-PA | 768 | CG33255-RA | 140..172 | 183..151 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..449 | 17..413 | 1985 | 100 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..449 | 17..413 | 1985 | 100 | Plus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 17..324 | 1480 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472994 | 29..413 | 1925 | 100 | Plus |
3L | 28110227 | 3L | 19475162..19475457 | 324..29 | 1420 | 98.6 | Minus |
3L | 28110227 | 3L | 19466706..19466962 | 285..29 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 19471728..19472096 | 413..39 | 1070 | 86.3 | Minus |
3L | 28110227 | 3L | 19475971..19476339 | 39..413 | 1070 | 86.3 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488278 | 49..291 | 610 | 84.4 | Plus |
3L | 28110227 | 3L | 19467674..19467810 | 277..413 | 550 | 93.4 | Plus |
3L | 28110227 | 3L | 19422975..19423224 | 413..147 | 395 | 78.3 | Minus |
3L | 28110227 | 3L | 19486798..19486900 | 413..310 | 365 | 92.3 | Minus |
3L | 28110227 | 3L | 19477668..19477760 | 413..321 | 360 | 92.5 | Minus |
3L | 28110227 | 3L | 19475123..19475206 | 324..241 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471847..19471903 | 333..277 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19476164..19476220 | 277..333 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475117..19475167 | 291..241 | 180 | 90.2 | Minus |
Blast to na_te.dros performed 2015-02-10 20:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BS16038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:31 Download gff for
BS16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-PA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:02 Download gff for
BS16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..455 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:57 Download gff for
BS16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..455 | 7..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:57 Download gff for
BS16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19473000 | 29..422 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:02 Download gff for
BS16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466100 | 29..422 | 98 | | Plus |
BS16038.complete Sequence
428 bp assembled on 2007-05-07
GenBank Submission: FJ638032
> BS16038.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCTAAAAGCTTTCTAGACCAT
BS16038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 396 | CG12519-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG12519-RA | 396 | CG12519-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
CG18294-RA | 426 | CG18294-PA | 1..308 | 17..324 | 1480 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..449 | 17..413 | 1985 | 100 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..449 | 17..413 | 1985 | 100 | Plus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 17..324 | 1480 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472994 | 29..413 | 1925 | 100 | Plus |
3L | 28110227 | 3L | 19475162..19475457 | 324..29 | 1420 | 98.6 | Minus |
3L | 28110227 | 3L | 19466706..19466962 | 285..29 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 19471728..19472096 | 413..39 | 1070 | 86.3 | Minus |
3L | 28110227 | 3L | 19475971..19476339 | 39..413 | 1070 | 86.3 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488278 | 49..291 | 610 | 84.4 | Plus |
3L | 28110227 | 3L | 19467674..19467810 | 277..413 | 550 | 93.4 | Plus |
3L | 28110227 | 3L | 19422975..19423224 | 413..147 | 395 | 78.3 | Minus |
3L | 28110227 | 3L | 19486798..19486900 | 413..310 | 365 | 92.3 | Minus |
3L | 28110227 | 3L | 19477668..19477760 | 413..321 | 360 | 92.5 | Minus |
3L | 28110227 | 3L | 19475123..19475206 | 324..241 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471847..19471903 | 333..277 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19476164..19476220 | 277..333 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475117..19475167 | 291..241 | 180 | 90.2 | Minus |
Blast to na_te.dros performed 2014-11-26 15:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BS16038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:26 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:36 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 45..453 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:24 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 58..446 | 22..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:26 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 45..453 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:21 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 58..446 | 22..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:21 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19472991 | 29..410 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:24 Download gff for
BS16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466091 | 29..410 | 100 | | Plus |
BS16038.pep Sequence
Translation from 16 to 411
> BS16038.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
ATPLAAPLAYSSPLAYSAPLSYAVPSAPLLI*
BS16038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PB | 131 | CG12519-PB | 1..131 | 1..131 | 633 | 100 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..131 | 1..131 | 633 | 100 | Plus |
CG18294-PA | 141 | CG18294-PA | 1..141 | 1..131 | 560 | 85.8 | Plus |
825-Oak-PB | 129 | CG32208-PB | 1..129 | 1..131 | 528 | 85.9 | Plus |
CG32213-PB | 129 | CG32213-PB | 1..129 | 1..131 | 525 | 85.2 | Plus |