Clone Sequence Records
BS16043.5prime Sequence
303 bp (303 high quality bases) assembled on 2007-04-16
> BS16043.5prime
GAAGTTATCAGTCGACATGTTCAAGCTGTGCGTCTTCGTTGCTCTCCTTA
GCCTGGCTGCTGCTGCCCCAGCTCCCGCTCCTGCTCCTGCTCCTGCTCCT
GGTCTCATTGGCCCTGGCATTGTGGCACCTGGAATCTGGGGACCCACCGT
TGTCGGATCTCCTCTGCTTGCTCCTCAGGTGGTGAGCGTGGTGCCCGGTG
CCATTTCTCATGCTGCCATCACCCAGGTGCATCCTTCTCCTCTGCTGATC
AAGAGCGTCCATGGCCTGGGACCAGTTGTGATCGGTTAAAAGCTTTCTAG
ACC
BS16043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13061-PA | 273 | Nplp3-RA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..308 | 17..290 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318460 | 28..290 | 1315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:39:14 has no hits.
BS16043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:33 Download gff for
BS16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13061-PA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:26 Download gff for
BS16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..308 | 17..290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:45 Download gff for
BS16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..308 | 17..290 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:45 Download gff for
BS16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318199..16318460 | 29..290 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:26 Download gff for
BS16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311299..16311560 | 29..290 | 100 | | Plus |
BS16043.3prime Sequence
303 bp (303 high quality bases) assembled on 2007-04-16
> BS16043.3prime
ATGGTCTAGAAAGCTTTTAACCGATCACAACTGGTCCCAGGCCATGGACG
CTCTTGATCAGCAGAGGAGAAGGATGCACCTGGGTGATGGCAGCATGAGA
AATGGCACCGGGCACCACGCTCACCACCTGAGGAGCAAGCAGAGGAGATC
CGACAACGGTGGGTCCCCAGATTCCAGGTGCCACAATGCCAGGGCCAATG
AGACCAGGAGCAGGAGCAGGAGCAGGAGCGGGAGCTGGGGCAGCAGCAGC
CAGGCTAAGGAGAGCAACGAAGACGCACAGCTTGAACATGTCGACTGATA
ACT
BS16043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13061-PA | 273 | Nplp3-RA | 1..273 | 289..17 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..308 | 289..16 | 1370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318460 | 278..16 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:31:24 has no hits.
BS16043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:33 Download gff for
BS16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13061-PA | 1..273 | 17..289 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:32 Download gff for
BS16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..308 | 16..289 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:49 Download gff for
BS16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..308 | 16..289 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:49 Download gff for
BS16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318199..16318460 | 16..277 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:32 Download gff for
BS16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311299..16311560 | 16..277 | 100 | | Minus |
BS16043.complete Sequence
305 bp assembled on 2007-05-07
GenBank Submission: FJ638033
> BS16043.complete
GAAGTTATCAGTCGACATGTTCAAGCTGTGCGTCTTCGTTGCTCTCCTTA
GCCTGGCTGCTGCTGCCCCAGCTCCCGCTCCTGCTCCTGCTCCTGCTCCT
GGTCTCATTGGCCCTGGCATTGTGGCACCTGGAATCTGGGGACCCACCGT
TGTCGGATCTCCTCTGCTTGCTCCTCAGGTGGTGAGCGTGGTGCCCGGTG
CCATTTCTCATGCTGCCATCACCCAGGTGCATCCTTCTCCTCTGCTGATC
AAGAGCGTCCATGGCCTGGGACCAGTTGTGATCGGTTAAAAGCTTTCTAG
ACCAT
BS16043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 273 | CG13061-PA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..308 | 17..290 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318460 | 28..290 | 1315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:55 has no hits.
BS16043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:28 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:38 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 34..307 | 17..290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:03 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 40..305 | 22..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:28 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 34..307 | 17..290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:27 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 40..305 | 22..287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:27 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318195..16318457 | 22..287 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:03 Download gff for
BS16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311295..16311557 | 22..287 | 98 | | Plus |
BS16043.pep Sequence
Translation from 16 to 288
> BS16043.pep
MFKLCVFVALLSLAAAAPAPAPAPAPAPGLIGPGIVAPGIWGPTVVGSPL
LAPQVVSVVPGAISHAAITQVHPSPLLIKSVHGLGPVVIG*
BS16043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-PA | 90 | CG13061-PA | 1..90 | 1..90 | 460 | 100 | Plus |
