Clone Sequence Records
BS16046.3prime Sequence
246 bp (246 high quality bases) assembled on 2007-04-16
> BS16046.3prime
ATGGTCTAGAAAGCTTTTATTGAAAATGTGGGAAATGTTGGGGCGCCGTG
TGTCTGTCGCAGGATGTGTGCGTCGTAATGTCCGTGGTTTTTGGGGGCCA
GGATGTCGTACTACTGGGGATAGTGAGAGGTAGTAGGTAGTAGGTAGTAG
GTAGAAGGACTGAGGCTGAGGTCGAGGTTGAGAGGTTGAGCTTAGTCACC
GGACCGTTGATATGGCAACTCCATTGATTCATGTCGACTGATAACT
BS16046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32714-PA | 216 | CG32714-RA | 1..216 | 232..17 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33181-RF | 4113 | CG32714-RF | 274..491 | 232..15 | 1090 | 100 | Minus |
CG33181-RI | 3920 | CG33181-RI | 176..376 | 215..15 | 1005 | 100 | Minus |
CG33181-RH | 4107 | CG33181-RH | 285..485 | 215..15 | 1005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8509455..8509656 | 216..15 | 1010 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 5661..5691 | 13..43 | 101 | 80.6 | Plus |
BS16046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:35 Download gff for
BS16046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32714-PA | 1..216 | 17..232 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:25 Download gff for
BS16046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 271..491 | 15..235 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:25 Download gff for
BS16046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 271..491 | 15..235 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:25 Download gff for
BS16046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8489618..8489637 | 216..235 | 95 | -> | Minus |
X | 8509456..8509656 | 15..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:25 Download gff for
BS16046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8383651..8383670 | 216..235 | 95 | -> | Minus |
arm_X | 8403489..8403689 | 15..215 | 100 | | Minus |
BS16046.5prime Sequence
246 bp (246 high quality bases) assembled on 2007-04-16
> BS16046.5prime
GAAGTTATCAGTCGACATGAATCAATGGAGTTGCCATATCAACGGTCCGG
TGACTAAGCTCAACCTCTCAACCTCGACCTCAGCCTCAGTCCTTCTACCT
ACTACCTACTACCTACTACCTCTCACTATCCCCAGTAGTACGACATCCTG
GCCCCCAAAAACCACGGACATTACGACGCACACATCCTGCGACAGACACA
CGGCGCCCCAACATTTCCCACATTTTCAATAAAAGCTTTCTAGACC
BS16046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32714-PA | 216 | CG32714-RA | 1..216 | 17..232 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33181-RF | 4113 | CG32714-RF | 274..491 | 17..234 | 1090 | 100 | Plus |
CG33181-RI | 3920 | CG33181-RI | 176..376 | 34..234 | 1005 | 100 | Plus |
CG33181-RH | 4107 | CG33181-RH | 285..485 | 34..234 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8509455..8509656 | 33..234 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 5661..5691 | 236..206 | 101 | 80.6 | Minus |
BS16046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:35 Download gff for
BS16046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32714-PA | 1..216 | 17..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:25 Download gff for
BS16046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 271..491 | 14..234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:19 Download gff for
BS16046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 271..491 | 14..234 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:19 Download gff for
BS16046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8489618..8489637 | 14..33 | 95 | -> | Plus |
X | 8509456..8509656 | 34..234 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:25 Download gff for
BS16046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8383651..8383670 | 14..33 | 95 | -> | Plus |
arm_X | 8403489..8403689 | 34..234 | 100 | | Plus |
BS16046.complete Sequence
248 bp assembled on 2007-05-07
> BS16046.complete
GAAGTTATCAGTCGACATGAATCAATGGAGTTGCCATATCAACGGTCCGG
TGACTAAGCTCAACCTCTCAACCTCGACCTCAGCCTCAGTCCTTCTACCT
ACTACCTACTACCTACTACCTCTCACTATCCCCAGTAGTACGACATCCTG
GCCCCCAAAAACCACGGACATTACGACGCACACATCCTGCGACAGACACA
CGGCGCCCCAACATTTCCCACATTTTCAATAAAAGCTTTCTAGACCAT
BS16046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 08:01:53 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33181-RF | 4113 | CG32714-RF | 274..491 | 17..234 | 1090 | 100 | Plus |
CG33181-RI | 3920 | CG33181-RI | 176..376 | 34..234 | 1005 | 100 | Plus |
CG33181-RH | 4107 | CG33181-RH | 285..485 | 34..234 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8509455..8509656 | 33..234 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 5661..5691 | 236..206 | 101 | 80.6 | Minus |
BS16046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 15:08:00 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:33 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 273..486 | 17..230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:46 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 274..487 | 17..230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:08:00 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 270..490 | 14..234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:26 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33181-RF | 274..487 | 17..230 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:26 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8489621..8489637 | 17..33 | 100 | -> | Plus |
X | 8509456..8509652 | 34..230 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:46 Download gff for
BS16046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8383654..8383670 | 17..33 | 100 | -> | Plus |
arm_X | 8403489..8403685 | 34..230 | 100 | | Plus |
BS16046.pep Sequence
Translation from 16 to 231
> BS16046.pep
MNQWSCHINGPVTKLNLSTSTSASVLLPTTYYLLPLTIPSSTTSWPPKTT
DITTHTSCDRHTAPQHFPHFQ*
Sequence BS16046.pep has no blast hits.