Clone Sequence Records
BS16047.3prime Sequence
321 bp (321 high quality bases) assembled on 2007-04-16
> BS16047.3prime
ATGGTCTAGAAAGCTTTCACTTCCGTGGCTGCTGGATGTGGATCTGGGGC
TTCTGCTGCACTGCAGCCGGTGGCTTGGGCGAGTGGGCCACCTGGGCGGA
GGCGGGCGTAAAGTCCGTGTTGCCCTTGACGGGGGCACCGCTCACAGAGC
CGGAGTTCACGGCAATGGGTTGTGTCAGTCCAGTACAATCCTCTGCATCC
TTGGGCGCGCGTTCTGCCGTCGGCGCTTTGTGCTGCACAATTCGCATGCC
ACCAGCCTTCAATGCAGGTGGGTGTCCGGCCACAAGATTTGGTTGTTCAT
CTGCCATGTCGACTGATAACT
BS16047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 291 | CG12384-RA | 1..291 | 307..17 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..398 | 307..17 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358116..11358271 | 17..172 | 780 | 100 | Plus |
2R | 25286936 | 2R | 11358336..11358424 | 173..261 | 445 | 100 | Plus |
2R | 25286936 | 2R | 11358958..11359003 | 262..307 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:16:17 has no hits.
BS16047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:35 Download gff for
BS16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-PA | 1..291 | 17..307 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:01 Download gff for
BS16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..406 | 8..315 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:34 Download gff for
BS16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..406 | 8..315 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:34 Download gff for
BS16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358336..11358424 | 173..261 | 100 | <- | Plus |
2R | 11358958..11359011 | 262..315 | 92 | | Plus |
2R | 11358108..11358271 | 8..172 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:01 Download gff for
BS16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245613..7245776 | 8..172 | 97 | <- | Plus |
arm_2R | 7245841..7245929 | 173..261 | 100 | <- | Plus |
arm_2R | 7246463..7246516 | 262..315 | 92 | | Plus |
BS16047.5prime Sequence
321 bp (321 high quality bases) assembled on 2007-04-16
> BS16047.5prime
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGTGAAAGCTTTCTAGACC
BS16047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 291 | CG12384-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..398 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358116..11358271 | 307..152 | 780 | 100 | Minus |
2R | 25286936 | 2R | 11358336..11358424 | 151..63 | 445 | 100 | Minus |
2R | 25286936 | 2R | 11358958..11359003 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:22 has no hits.
BS16047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:36 Download gff for
BS16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:27 Download gff for
BS16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..406 | 9..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:12 Download gff for
BS16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..406 | 9..316 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:12 Download gff for
BS16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358108..11358271 | 152..316 | 97 | <- | Minus |
2R | 11358336..11358424 | 63..151 | 100 | <- | Minus |
2R | 11358958..11359011 | 9..62 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:27 Download gff for
BS16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245613..7245776 | 152..316 | 97 | <- | Minus |
arm_2R | 7245841..7245929 | 63..151 | 100 | <- | Minus |
arm_2R | 7246463..7246516 | 9..62 | 92 | | Minus |
BS16047.complete Sequence
323 bp assembled on 2007-05-07
GenBank Submission: FJ638035
> BS16047.complete
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGTGAAAGCTTTCTAGACCAT
BS16047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 291 | CG12384-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..398 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358116..11358271 | 307..152 | 780 | 100 | Minus |
2R | 25286936 | 2R | 11358336..11358424 | 151..63 | 445 | 100 | Minus |
2R | 25286936 | 2R | 11358958..11359003 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:21 has no hits.
BS16047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:36:38 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:14 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 77..383 | 9..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:32 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 108..397 | 17..306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:36:39 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 77..383 | 9..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:46 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 108..397 | 17..306 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:46 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358117..11358271 | 152..306 | 100 | <- | Minus |
2R | 11358336..11358424 | 63..151 | 100 | <- | Minus |
2R | 11358958..11359003 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:32 Download gff for
BS16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245622..7245776 | 152..306 | 100 | <- | Minus |
arm_2R | 7245841..7245929 | 63..151 | 100 | <- | Minus |
arm_2R | 7246463..7246508 | 17..62 | 100 | | Minus |
BS16047.pep Sequence
Translation from 16 to 306
> BS16047.pep
MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV
NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRK*
BS16047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 96 | CG12384-PA | 1..96 | 1..96 | 503 | 100 | Plus |