Clone BS16047 Report

Search the DGRC for BS16047

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG12384-RA
Protein status:BS16047.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16047.3prime Sequence

321 bp (321 high quality bases) assembled on 2007-04-16

> BS16047.3prime
ATGGTCTAGAAAGCTTTCACTTCCGTGGCTGCTGGATGTGGATCTGGGGC
TTCTGCTGCACTGCAGCCGGTGGCTTGGGCGAGTGGGCCACCTGGGCGGA
GGCGGGCGTAAAGTCCGTGTTGCCCTTGACGGGGGCACCGCTCACAGAGC
CGGAGTTCACGGCAATGGGTTGTGTCAGTCCAGTACAATCCTCTGCATCC
TTGGGCGCGCGTTCTGCCGTCGGCGCTTTGTGCTGCACAATTCGCATGCC
ACCAGCCTTCAATGCAGGTGGGTGTCCGGCCACAAGATTTGGTTGTTCAT
CTGCCATGTCGACTGATAACT

BS16047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 291 CG12384-RA 1..291 307..17 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..398 307..17 1455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358116..11358271 17..172 780 100 Plus
2R 25286936 2R 11358336..11358424 173..261 445 100 Plus
2R 25286936 2R 11358958..11359003 262..307 230 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:16:17 has no hits.

BS16047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:35 Download gff for BS16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-PA 1..291 17..307 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:01 Download gff for BS16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..406 8..315 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:34 Download gff for BS16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..406 8..315 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:34 Download gff for BS16047.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11358336..11358424 173..261 100 <- Plus
2R 11358958..11359011 262..315 92   Plus
2R 11358108..11358271 8..172 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:01 Download gff for BS16047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245613..7245776 8..172 97 <- Plus
arm_2R 7245841..7245929 173..261 100 <- Plus
arm_2R 7246463..7246516 262..315 92   Plus

BS16047.5prime Sequence

321 bp (321 high quality bases) assembled on 2007-04-16

> BS16047.5prime
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGTGAAAGCTTTCTAGACC

BS16047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 291 CG12384-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..398 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358116..11358271 307..152 780 100 Minus
2R 25286936 2R 11358336..11358424 151..63 445 100 Minus
2R 25286936 2R 11358958..11359003 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:22 has no hits.

BS16047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:36 Download gff for BS16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-PA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:27 Download gff for BS16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..406 9..316 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:12 Download gff for BS16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..406 9..316 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:12 Download gff for BS16047.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11358108..11358271 152..316 97 <- Minus
2R 11358336..11358424 63..151 100 <- Minus
2R 11358958..11359011 9..62 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:27 Download gff for BS16047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245613..7245776 152..316 97 <- Minus
arm_2R 7245841..7245929 63..151 100 <- Minus
arm_2R 7246463..7246516 9..62 92   Minus

BS16047.complete Sequence

323 bp assembled on 2007-05-07

GenBank Submission: FJ638035

> BS16047.complete
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGTGAAAGCTTTCTAGACCAT

BS16047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 291 CG12384-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..398 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358116..11358271 307..152 780 100 Minus
2R 25286936 2R 11358336..11358424 151..63 445 100 Minus
2R 25286936 2R 11358958..11359003 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:00:21 has no hits.

BS16047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:36:38 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:14 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 77..383 9..316 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:32 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 108..397 17..306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:36:39 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 77..383 9..316 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:46 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 108..397 17..306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:46 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11358117..11358271 152..306 100 <- Minus
2R 11358336..11358424 63..151 100 <- Minus
2R 11358958..11359003 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:32 Download gff for BS16047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245622..7245776 152..306 100 <- Minus
arm_2R 7245841..7245929 63..151 100 <- Minus
arm_2R 7246463..7246508 17..62 100   Minus

BS16047.pep Sequence

Translation from 16 to 306

> BS16047.pep
MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV
NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRK*

BS16047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 96 CG12384-PA 1..96 1..96 503 100 Plus