Clone Sequence Records
BS16048.3prime Sequence
267 bp (267 high quality bases) assembled on 2007-04-16
> BS16048.3prime
ATGGTCTAGAAAGCTTTTATGGTGCCAACATTTTTGACAACTCCTCATCT
TGCAAGCATCCTTTCAAGAACTCATCTTGGGTTAATTGACCATCGTTATT
TTCGTCCATTTTTGCAAAAATATTTTTTGCTCTTTCTTCTGCTGAATCAG
CTGGACGATTAGATGAGCACGCTCCTAGCATGTCATAAATTGCCTGAACA
ATTTTGGTCATTTCTTGTATGTCTATAACACCATTGCCATCGACATCGTA
CATGTCGACTGATAACT
BS16048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PA | 561 | CG7646-RA | 325..561 | 253..17 | 1185 | 100 | Minus |
CG7646-PB | 237 | CG7646-RB | 1..237 | 253..17 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1233 | 253..16 | 1190 | 100 | Minus |
CG7646-RB | 627 | CG7646-RB | 284..521 | 253..16 | 1190 | 100 | Minus |
CG7646-RA | 970 | CG7646-RA | 627..864 | 253..16 | 1190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995806 | 197..16 | 910 | 100 | Minus |
3L | 28110227 | 3L | 19995443..19995503 | 253..193 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:04:21 has no hits.
BS16048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:36 Download gff for
BS16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-PB | 1..237 | 17..253 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:03 Download gff for
BS16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..864 | 16..258 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:44 Download gff for
BS16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..864 | 16..258 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:44 Download gff for
BS16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995439..19995502 | 194..258 | 98 | -> | Minus |
3L | 19995629..19995806 | 16..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:03 Download gff for
BS16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988539..19988602 | 194..258 | 98 | -> | Minus |
arm_3L | 19988729..19988906 | 16..193 | 100 | | Minus |
BS16048.5prime Sequence
267 bp (267 high quality bases) assembled on 2007-04-16
> BS16048.5prime
GAAGTTATCAGTCGACATGTACGATGTCGATGGCAATGGTGTTATAGACA
TACAAGAAATGACCAAAATTGTTCAGGCAATTTATGACATGCTAGGAGCG
TGCTCATCTAATCGTCCAGCTGATTCAGCAGAAGAAAGAGCAAAAAATAT
TTTTGCAAAAATGGACGAAAATAACGATGGTCAATTAACCCAAGATGAGT
TCTTGAAAGGATGCTTGCAAGATGAGGAGTTGTCAAAAATGTTGGCACCA
TAAAAGCTTTCTAGACC
BS16048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PA | 561 | CG7646-RA | 325..561 | 17..253 | 1185 | 100 | Plus |
CG7646-PB | 237 | CG7646-RB | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1233 | 17..254 | 1190 | 100 | Plus |
CG7646-RB | 627 | CG7646-RB | 284..521 | 17..254 | 1190 | 100 | Plus |
CG7646-RA | 970 | CG7646-RA | 627..864 | 17..254 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995806 | 73..254 | 910 | 100 | Plus |
3L | 28110227 | 3L | 19995443..19995503 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:07:12 has no hits.
BS16048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:36 Download gff for
BS16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-PB | 1..237 | 17..253 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:14 Download gff for
BS16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..864 | 12..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:05 Download gff for
BS16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..864 | 12..254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:05 Download gff for
BS16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995439..19995502 | 12..76 | 98 | -> | Plus |
3L | 19995629..19995806 | 77..254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:14 Download gff for
BS16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988539..19988602 | 12..76 | 98 | -> | Plus |
arm_3L | 19988729..19988906 | 77..254 | 100 | | Plus |
BS16048.complete Sequence
269 bp assembled on 2007-05-07
GenBank Submission: FJ638036
> BS16048.complete
GAAGTTATCAGTCGACATGTACGATGTCGATGGCAATGGTGTTATAGACA
TACAAGAAATGACCAAAATTGTTCAGGCAATTTATGACATGCTAGGAGCG
TGCTCATCTAATCGTCCAGCTGATTCAGCAGAAGAAAGAGCAAAAAATAT
TTTTGCAAAAATGGACGAAAATAACGATGGTCAATTAACCCAAGATGAGT
TCTTGAAAGGATGCTTGCAAGATGAGGAGTTGTCAAAAATGTTGGCACCA
TAAAAGCTTTCTAGACCAT
BS16048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 561 | CG7646-PC | 325..561 | 17..253 | 1185 | 100 | Plus |
CG7646-RB | 237 | CG7646-PB | 1..237 | 17..253 | 1185 | 100 | Plus |
CG7646-RA | 561 | CG7646-PA | 325..561 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1233 | 17..254 | 1190 | 100 | Plus |
CG7646-RB | 627 | CG7646-RB | 284..521 | 17..254 | 1190 | 100 | Plus |
CG7646-RA | 970 | CG7646-RA | 627..864 | 17..254 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995806 | 73..254 | 910 | 100 | Plus |
3L | 28110227 | 3L | 19995443..19995503 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:31:07 has no hits.
BS16048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:29 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 321..561 | 12..253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:39 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 321..562 | 12..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:42 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 627..861 | 17..251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:29 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 321..562 | 12..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:19 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 627..861 | 17..251 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:19 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995443..19995502 | 17..76 | 100 | -> | Plus |
3L | 19995629..19995803 | 77..251 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:42 Download gff for
BS16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988543..19988602 | 17..76 | 100 | -> | Plus |
arm_3L | 19988729..19988903 | 77..251 | 100 | | Plus |
BS16048.pep Sequence
Translation from 16 to 252
> BS16048.pep
MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMD
ENNDGQLTQDEFLKGCLQDEELSKMLAP*
BS16048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PB | 78 | CG7646-PB | 1..78 | 1..78 | 402 | 100 | Plus |
CG7646-PC | 186 | CG7646-PC | 109..186 | 1..78 | 402 | 100 | Plus |
CG7646-PA | 186 | CG7646-PA | 109..186 | 1..78 | 402 | 100 | Plus |
Nca-PA | 190 | CG7641-PA | 107..183 | 1..76 | 163 | 44.9 | Plus |
CG44422-PE | 363 | CG44422-PE | 280..357 | 1..77 | 158 | 38.5 | Plus |