Clone Sequence Records
BS16050.3prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16050.3prime
ATGGTCTAGAAAGCTTCTAGCGTCTACGTCCAGCGCCTCCGGCACGAGCA
CTCCCACCCACCTCGGCGCCCGCTCCAATGCCGACGTCCATCCCAGCTCC
AGGTCCGTCCTCAACGGCTTTAGCCGCTCCGCCGCCGTGAGCTCCAAATT
GTCCGCCCGCCCCCGCCGCTGCGCCCAAGCCCCCTTGGGCGGCACCCATA
GCCTCGGGTTGATCTGGAACTTGAGCCTCTGCGATGCTCCGAAGCATCAC
CCAAGTAATCCAGGACAACATTGCCAGTTTCATGTCGACTGATAACT
BS16050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 267 | CG12483-RA | 1..267 | 283..17 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..313 | 283..17 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97923..98145 | 17..239 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 98285..98329 | 239..283 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:33 has no hits.
BS16050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:37 Download gff for
BS16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:06 Download gff for
BS16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:00 Download gff for
BS16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:00 Download gff for
BS16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97923..98144 | 17..238 | 100 | <- | Plus |
3L | 98285..98329 | 239..283 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:06 Download gff for
BS16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97923..98144 | 17..238 | 100 | <- | Plus |
arm_3L | 98285..98329 | 239..283 | 100 | | Plus |
BS16050.5prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16050.5prime
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCTAGAAGCTTTCTAGACC
BS16050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 267 | CG12483-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..313 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97923..98145 | 283..61 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 98285..98329 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:07:18 has no hits.
BS16050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:37 Download gff for
BS16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:26 Download gff for
BS16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:39 Download gff for
BS16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:39 Download gff for
BS16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97923..98144 | 62..283 | 100 | <- | Minus |
3L | 98285..98329 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:26 Download gff for
BS16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97923..98144 | 62..283 | 100 | <- | Minus |
arm_3L | 98285..98329 | 17..61 | 100 | | Minus |
BS16050.complete Sequence
299 bp assembled on 2007-05-07
GenBank Submission: FJ638037
> BS16050.complete
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCTAGAAGCTTTCTAGACCAT
BS16050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 267 | CG12483-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..313 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97923..98145 | 283..61 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 98285..98329 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:31 has no hits.
BS16050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:13 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:20 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 43..309 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:20 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:13 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 43..309 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:07 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..313 | 17..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:07 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97923..98144 | 62..283 | 100 | <- | Minus |
3L | 98285..98329 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:20 Download gff for
BS16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97923..98144 | 62..283 | 100 | <- | Minus |
arm_3L | 98285..98329 | 17..61 | 100 | | Minus |
BS16050.pep Sequence
Translation from 16 to 282
> BS16050.pep
MKLAMLSWITWVMLRSIAEAQVPDQPEAMGAAQGGLGAAAGAGGQFGAHG
GGAAKAVEDGPGAGMDVGIGAGAEVGGSARAGGAGRRR*
BS16050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 88 | CG12483-PA | 1..88 | 1..88 | 452 | 100 | Plus |