Clone BS16050 Report

Search the DGRC for BS16050

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG12483-RA
Protein status:BS16050.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16050.3prime Sequence

297 bp (297 high quality bases) assembled on 2007-04-16

> BS16050.3prime
ATGGTCTAGAAAGCTTCTAGCGTCTACGTCCAGCGCCTCCGGCACGAGCA
CTCCCACCCACCTCGGCGCCCGCTCCAATGCCGACGTCCATCCCAGCTCC
AGGTCCGTCCTCAACGGCTTTAGCCGCTCCGCCGCCGTGAGCTCCAAATT
GTCCGCCCGCCCCCGCCGCTGCGCCCAAGCCCCCTTGGGCGGCACCCATA
GCCTCGGGTTGATCTGGAACTTGAGCCTCTGCGATGCTCCGAAGCATCAC
CCAAGTAATCCAGGACAACATTGCCAGTTTCATGTCGACTGATAACT

BS16050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 267 CG12483-RA 1..267 283..17 1335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..313 283..17 1335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97923..98145 17..239 1115 100 Plus
3L 28110227 3L 98285..98329 239..283 225 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:59:33 has no hits.

BS16050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:37 Download gff for BS16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-PA 1..267 17..283 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:06 Download gff for BS16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:00 Download gff for BS16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:00 Download gff for BS16050.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 97923..98144 17..238 100 <- Plus
3L 98285..98329 239..283 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:06 Download gff for BS16050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97923..98144 17..238 100 <- Plus
arm_3L 98285..98329 239..283 100   Plus

BS16050.5prime Sequence

297 bp (297 high quality bases) assembled on 2007-04-16

> BS16050.5prime
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCTAGAAGCTTTCTAGACC

BS16050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 267 CG12483-RA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..313 17..283 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97923..98145 283..61 1115 100 Minus
3L 28110227 3L 98285..98329 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:07:18 has no hits.

BS16050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:37 Download gff for BS16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-PA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:26 Download gff for BS16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:39 Download gff for BS16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:39 Download gff for BS16050.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 97923..98144 62..283 100 <- Minus
3L 98285..98329 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:26 Download gff for BS16050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97923..98144 62..283 100 <- Minus
arm_3L 98285..98329 17..61 100   Minus

BS16050.complete Sequence

299 bp assembled on 2007-05-07

GenBank Submission: FJ638037

> BS16050.complete
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCTAGAAGCTTTCTAGACCAT

BS16050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 267 CG12483-PA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..313 17..283 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97923..98145 283..61 1115 100 Minus
3L 28110227 3L 98285..98329 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:31 has no hits.

BS16050.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:13 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:20 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 43..309 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:20 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:13 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 43..309 17..283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:07 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..313 17..283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:07 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 97923..98144 62..283 100 <- Minus
3L 98285..98329 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:20 Download gff for BS16050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97923..98144 62..283 100 <- Minus
arm_3L 98285..98329 17..61 100   Minus

BS16050.pep Sequence

Translation from 16 to 282

> BS16050.pep
MKLAMLSWITWVMLRSIAEAQVPDQPEAMGAAQGGLGAAAGAGGQFGAHG
GGAAKAVEDGPGAGMDVGIGAGAEVGGSARAGGAGRRR*

BS16050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 88 CG12483-PA 1..88 1..88 452 100 Plus