Clone Sequence Records
BS16055.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16055.5prime
GAAGTTATCAGTCGACATGAGTCCGTACAGCGGATCCGTGCGTCGTCTGC
TGGACAGTTGGCCAGGAAAGAAGCGCTTCGGTGTCTACCGCTTCCTGCCG
CTCTTCTTTTTACTGGGCGCCGGCCTGGAATTCTCCATGATCAATTGGAC
AGTGGGCGAGACCAATTTCTACCGCACTTTTAAGCGCCGCCAGGCGAAGA
ACTACGTGGAAGAGCAGCAGCATCTGCAGGCGCGAGCCGCGAATAACACC
AACTAAAAGCTTTCTAGACC
BS16055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32736-PA | 240 | CG32736-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
CG32736-PB | 240 | CG32736-RB | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42308-RB | 640 | CG42308-RB | 165..406 | 15..256 | 1210 | 100 | Plus |
CG42308-RA | 635 | CG42308-RA | 160..401 | 15..256 | 1210 | 100 | Plus |
CG32736-RB | 635 | CG32736-RB | 160..401 | 15..256 | 1210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7011601..7011756 | 15..170 | 780 | 100 | Plus |
X | 23542271 | X | 7011818..7011903 | 171..256 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:58:42 has no hits.
BS16055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:41 Download gff for
BS16055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-PB | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:30 Download gff for
BS16055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42308-RB | 112..355 | 15..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:37 Download gff for
BS16055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 160..403 | 15..260 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:37 Download gff for
BS16055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7011601..7011756 | 15..170 | 100 | -> | Plus |
X | 7011818..7011905 | 171..260 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:30 Download gff for
BS16055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6905634..6905789 | 15..170 | 100 | -> | Plus |
arm_X | 6905851..6905938 | 171..260 | 97 | | Plus |
BS16055.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16055.3prime
ATGGTCTAGAAAGCTTTTAGTTGGTGTTATTCGCGGCTCGCGCCTGCAGA
TGCTGCTGCTCTTCCACGTAGTTCTTCGCCTGGCGGCGCTTAAAAGTGCG
GTAGAAATTGGTCTCGCCCACTGTCCAATTGATCATGGAGAATTCCAGGC
CGGCGCCCAGTAAAAAGAAGAGCGGCAGGAAGCGGTAGACACCGAAGCGC
TTCTTTCCTGGCCAACTGTCCAGCAGACGACGCACGGATCCGCTGTACGG
ACTCATGTCGACTGATAACT
BS16055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32736-PA | 240 | CG32736-RA | 1..240 | 256..17 | 1200 | 100 | Minus |
CG32736-PB | 240 | CG32736-RB | 1..240 | 256..17 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42308-RB | 640 | CG42308-RB | 165..406 | 258..17 | 1210 | 100 | Minus |
CG42308-RA | 635 | CG42308-RA | 160..401 | 258..17 | 1210 | 100 | Minus |
CG32736-RB | 635 | CG32736-RB | 160..401 | 258..17 | 1210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7011601..7011756 | 258..103 | 780 | 100 | Minus |
X | 23542271 | X | 7011818..7011903 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:37:52 has no hits.
BS16055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:40 Download gff for
BS16055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-PB | 1..240 | 17..256 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:26 Download gff for
BS16055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42308-RB | 112..355 | 13..258 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:27 Download gff for
BS16055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 160..403 | 13..258 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:27 Download gff for
BS16055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7011601..7011756 | 103..258 | 100 | -> | Minus |
X | 7011818..7011905 | 13..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:26 Download gff for
BS16055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6905634..6905789 | 103..258 | 100 | -> | Minus |
arm_X | 6905851..6905938 | 13..102 | 97 | | Minus |
BS16055.complete Sequence
272 bp assembled on 2007-05-07
GenBank Submission: FJ638038
> BS16055.complete
GAAGTTATCAGTCGACATGAGTCCGTACAGCGGATCCGTGCGTCGTCTGC
TGGACAGTTGGCCAGGAAAGAAGCGCTTCGGTGTCTACCGCTTCCTGCCG
CTCTTCTTTTTACTGGGCGCCGGCCTGGAATTCTCCATGATCAATTGGAC
AGTGGGCGAGACCAATTTCTACCGCACTTTTAAGCGCCGCCAGGCGAAGA
ACTACGTGGAAGAGCAGCAGCATCTGCAGGCGCGAGCCGCGAATAACACC
AACTAAAAGCTTTCTAGACCAT
BS16055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32736-RB | 240 | CG32736-PB | 1..240 | 17..256 | 1200 | 100 | Plus |
CG32736-RA | 240 | CG32736-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42308-RB | 640 | CG42308-RB | 165..406 | 15..256 | 1210 | 100 | Plus |
CG42308-RA | 635 | CG42308-RA | 160..401 | 15..256 | 1210 | 100 | Plus |
CG32736-RB | 635 | CG32736-RB | 160..401 | 15..256 | 1210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7011601..7011756 | 15..170 | 780 | 100 | Plus |
X | 23542271 | X | 7011818..7011903 | 171..256 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:10:30 has no hits.
BS16055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:22 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:38 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 156..399 | 15..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:25 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42308-RB | 114..351 | 17..254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:23 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 156..399 | 15..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:30 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32736-RB | 162..399 | 17..254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:30 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7011603..7011756 | 17..170 | 100 | -> | Plus |
X | 7011818..7011901 | 171..254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:25 Download gff for
BS16055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6905636..6905789 | 17..170 | 100 | -> | Plus |
arm_X | 6905851..6905934 | 171..254 | 100 | | Plus |
BS16055.pep Sequence
Translation from 16 to 255
> BS16055.pep
MSPYSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETN
FYRTFKRRQAKNYVEEQQHLQARAANNTN*
BS16055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32736-PB | 79 | CG32736-PB | 1..79 | 1..79 | 421 | 100 | Plus |
CG32736-PA | 79 | CG32736-PA | 1..79 | 1..79 | 421 | 100 | Plus |