Clone BS16056 Report

Search the DGRC for BS16056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG31360-RA
Protein status:BS16056.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16056.3prime Sequence

327 bp (327 high quality bases) assembled on 2007-04-16

> BS16056.3prime
ATGGTCTAGAAAGCTTTTAACGTCTAGAAAAGAACTGATGATCAGTGCTA
GTATTTTCCTGTTCTTTTGGCTTCTCGGCGGTTGCCTTCAGGAAATTCGC
GTCTGCCAGGCGGGCCACGCCCAGAACTCCAACGGCTGCAGCCAAGCCTT
TCATAGTGAAATTCTCCAGAGGTTTCGCTTGTCTTTTTTTCGACTGTGCC
AATAGGAAGGCACCAATTCCCAGGAGTCCAAGGCCACTGACCAGACGGCA
GGCCAAGCAGTCCACCTCGTTGGAAACGTTGTCCTTGTTCCAAAAAGAAA
GTCTACCGATCATGTCGACTGATAACT

BS16056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-PA 297 CG31360-RA 1..297 313..17 1485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-RA 649 CG31360-RA 77..373 313..17 1485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17685173..17685350 313..136 890 100 Minus
3R 32079331 3R 17685411..17685531 137..17 605 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:31:58 has no hits.

BS16056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:41 Download gff for BS16056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-PA 1..297 17..313 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:39 Download gff for BS16056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..373 17..313 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:57 Download gff for BS16056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..373 17..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:01:57 Download gff for BS16056.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17685173..17685350 136..313 100 -> Minus
3R 17685413..17685531 17..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:39 Download gff for BS16056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13510895..13511072 136..313 100 -> Minus
arm_3R 13511135..13511253 17..135 100   Minus

BS16056.5prime Sequence

327 bp (327 high quality bases) assembled on 2007-04-16

> BS16056.5prime
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTTAAAAGCTTTCTAGACC

BS16056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-PA 297 CG31360-RA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-RA 649 CG31360-RA 77..373 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17685173..17685350 17..194 890 100 Plus
3R 32079331 3R 17685411..17685531 193..313 605 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:29:52 has no hits.

BS16056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for BS16056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-PA 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:55 Download gff for BS16056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..373 17..313 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:35 Download gff for BS16056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..373 17..313 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:35 Download gff for BS16056.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17685173..17685350 17..194 100 -> Plus
3R 17685413..17685531 195..313 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:55 Download gff for BS16056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13510895..13511072 17..194 100 -> Plus
arm_3R 13511135..13511253 195..313 100   Plus

BS16056.complete Sequence

329 bp assembled on 2007-05-07

GenBank Submission: FJ638039

> BS16056.complete
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTTAAAAGCTTTCTAGACCAT

BS16056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-RA 297 CG31360-PA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-RA 649 CG31360-RA 77..373 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17685173..17685350 17..194 890 100 Plus
3R 32079331 3R 17685411..17685531 193..313 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:05:14 has no hits.

BS16056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:51 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:42 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 72..368 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:51 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..371 17..311 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:51 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 72..368 17..313 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:08 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
CG31360-RA 77..371 17..311 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:08 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17685173..17685350 17..194 100 -> Plus
3R 17685413..17685529 195..311 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:51 Download gff for BS16056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13510895..13511072 17..194 100 -> Plus
arm_3R 13511135..13511251 195..311 100   Plus

BS16056.pep Sequence

Translation from 16 to 312

> BS16056.pep
MIGRLSFWNKDNVSNEVDCLACRLVSGLGLLGIGAFLLAQSKKRQAKPLE
NFTMKGLAAAVGVLGVARLADANFLKATAEKPKEQENTSTDHQFFSRR*

BS16056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31360-PA 98 CG31360-PA 1..98 1..98 496 100 Plus