Clone Sequence Records
BS16056.3prime Sequence
327 bp (327 high quality bases) assembled on 2007-04-16
> BS16056.3prime
ATGGTCTAGAAAGCTTTTAACGTCTAGAAAAGAACTGATGATCAGTGCTA
GTATTTTCCTGTTCTTTTGGCTTCTCGGCGGTTGCCTTCAGGAAATTCGC
GTCTGCCAGGCGGGCCACGCCCAGAACTCCAACGGCTGCAGCCAAGCCTT
TCATAGTGAAATTCTCCAGAGGTTTCGCTTGTCTTTTTTTCGACTGTGCC
AATAGGAAGGCACCAATTCCCAGGAGTCCAAGGCCACTGACCAGACGGCA
GGCCAAGCAGTCCACCTCGTTGGAAACGTTGTCCTTGTTCCAAAAAGAAA
GTCTACCGATCATGTCGACTGATAACT
BS16056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 297 | CG31360-RA | 1..297 | 313..17 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..373 | 313..17 | 1485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 313..136 | 890 | 100 | Minus |
3R | 32079331 | 3R | 17685411..17685531 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:31:58 has no hits.
BS16056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:41 Download gff for
BS16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-PA | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:39 Download gff for
BS16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..373 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:57 Download gff for
BS16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..373 | 17..313 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:01:57 Download gff for
BS16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 136..313 | 100 | -> | Minus |
3R | 17685413..17685531 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:39 Download gff for
BS16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 136..313 | 100 | -> | Minus |
arm_3R | 13511135..13511253 | 17..135 | 100 | | Minus |
BS16056.5prime Sequence
327 bp (327 high quality bases) assembled on 2007-04-16
> BS16056.5prime
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTTAAAAGCTTTCTAGACC
BS16056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 297 | CG31360-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..373 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 17..194 | 890 | 100 | Plus |
3R | 32079331 | 3R | 17685411..17685531 | 193..313 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:29:52 has no hits.
BS16056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for
BS16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-PA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:55 Download gff for
BS16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..373 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:35 Download gff for
BS16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..373 | 17..313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:35 Download gff for
BS16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 17..194 | 100 | -> | Plus |
3R | 17685413..17685531 | 195..313 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:55 Download gff for
BS16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 17..194 | 100 | -> | Plus |
arm_3R | 13511135..13511253 | 195..313 | 100 | | Plus |
BS16056.complete Sequence
329 bp assembled on 2007-05-07
GenBank Submission: FJ638039
> BS16056.complete
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTTAAAAGCTTTCTAGACCAT
BS16056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 297 | CG31360-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..373 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 17..194 | 890 | 100 | Plus |
3R | 32079331 | 3R | 17685411..17685531 | 193..313 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:05:14 has no hits.
BS16056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:51 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:42 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 72..368 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:51 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..371 | 17..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:51 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 72..368 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:08 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..371 | 17..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:08 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 17..194 | 100 | -> | Plus |
3R | 17685413..17685529 | 195..311 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:51 Download gff for
BS16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 17..194 | 100 | -> | Plus |
arm_3R | 13511135..13511251 | 195..311 | 100 | | Plus |
BS16056.pep Sequence
Translation from 16 to 312
> BS16056.pep
MIGRLSFWNKDNVSNEVDCLACRLVSGLGLLGIGAFLLAQSKKRQAKPLE
NFTMKGLAAAVGVLGVARLADANFLKATAEKPKEQENTSTDHQFFSRR*
BS16056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 98 | CG31360-PA | 1..98 | 1..98 | 496 | 100 | Plus |