Clone Sequence Records
BS16057.5prime Sequence
264 bp (264 high quality bases) assembled on 2007-04-16
> BS16057.5prime
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCTAG
AAGCTTTCTAGACC
BS16057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PA | 234 | CG17325-RA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..893 | 17..250 | 1170 | 100 | Plus |
CG42305-RB | 779 | CG42305-RB | 299..532 | 17..250 | 1170 | 100 | Plus |
CG42305-RA | 657 | CG42305-RA | 299..532 | 17..250 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813694 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:51:25 has no hits.
BS16057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for
BS16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-PA | 1..234 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:22:38 Download gff for
BS16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 284..535 | 2..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:38 Download gff for
BS16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 284..535 | 2..253 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:38 Download gff for
BS16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813446..18813697 | 2..253 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:22:38 Download gff for
BS16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813446..18813697 | 2..253 | 97 | | Plus |
BS16057.3prime Sequence
264 bp (264 high quality bases) assembled on 2007-04-16
> BS16057.3prime
ATGGTCTAGAAAGCTTCTAGCAGAAGTGCAGGTTATTGAACTGCTCCCGA
TTGTGGGTGACCATCTGATTGTATTTGAAGGCGGCCGACTGCTGGGAGCT
GCTCTGAGCCGTGAGCCTGGTGTTCCGCAGGAAACTATCCGCCGGACTGC
TCGAAACGGCGTACTTTCCGCCCAGACCCTCCACGGTCCGCATGGGACTC
AGGTGCTTGGCGGGAATGGCCTTGCTGGGTGTGCGAGTTTGGTGAACCAT
GTCGACTGATAACT
BS16057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PA | 234 | CG17325-RA | 1..234 | 250..17 | 1170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..893 | 250..17 | 1170 | 100 | Minus |
CG42305-RB | 779 | CG42305-RB | 299..532 | 250..17 | 1170 | 100 | Minus |
CG42305-RA | 657 | CG42305-RA | 299..532 | 250..17 | 1170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813694 | 250..17 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:14:10 has no hits.
BS16057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for
BS16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-PA | 1..234 | 17..250 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:21 Download gff for
BS16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 285..535 | 14..264 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:12 Download gff for
BS16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 285..535 | 14..264 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:12 Download gff for
BS16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813447..18813697 | 14..264 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:21 Download gff for
BS16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813447..18813697 | 14..264 | 97 | | Minus |
BS16057.complete Sequence
266 bp assembled on 2007-05-07
GenBank Submission: FJ638040
> BS16057.complete
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCTAG
AAGCTTTCTAGACCAT
BS16057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-RC | 234 | CG17325-PC | 1..234 | 17..250 | 1170 | 100 | Plus |
CG17325-RB | 234 | CG17325-PB | 1..234 | 17..250 | 1170 | 100 | Plus |
CG17325-RA | 234 | CG17325-PA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..893 | 17..250 | 1170 | 100 | Plus |
CG42305-RB | 779 | CG42305-RB | 299..532 | 17..250 | 1170 | 100 | Plus |
CG42305-RA | 657 | CG42305-RA | 299..532 | 17..250 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813694 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:35 has no hits.
BS16057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:54 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-RB | 1..234 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:35 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-RA | 283..534 | 2..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:41 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 299..532 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:54 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-RA | 283..534 | 2..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:35 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 299..532 | 17..250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:35 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813461..18813694 | 17..250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:41 Download gff for
BS16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813461..18813694 | 17..250 | 100 | | Plus |
BS16057.pep Sequence
Translation from 16 to 249
> BS16057.pep
MVHQTRTPSKAIPAKHLSPMRTVEGLGGKYAVSSSPADSFLRNTRLTAQS
SSQQSAAFKYNQMVTHNREQFNNLHFC*
BS16057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PC | 77 | CG17325-PC | 1..77 | 1..77 | 399 | 100 | Plus |
CG17325-PB | 77 | CG17325-PB | 1..77 | 1..77 | 399 | 100 | Plus |
CG17325-PA | 77 | CG17325-PA | 1..77 | 1..77 | 399 | 100 | Plus |