Clone BS16057 Report

Search the DGRC for BS16057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG17325-RA
Protein status:BS16057.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16057.5prime Sequence

264 bp (264 high quality bases) assembled on 2007-04-16

> BS16057.5prime
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCTAG
AAGCTTTCTAGACC

BS16057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-PA 234 CG17325-RA 1..234 17..250 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42305-RC 1018 CG42305-RC 660..893 17..250 1170 100 Plus
CG42305-RB 779 CG42305-RB 299..532 17..250 1170 100 Plus
CG42305-RA 657 CG42305-RA 299..532 17..250 1170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18813461..18813694 17..250 1170 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:51:25 has no hits.

BS16057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for BS16057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17325-PA 1..234 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:22:38 Download gff for BS16057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 284..535 2..253 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:38 Download gff for BS16057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42305-RA 284..535 2..253 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:38 Download gff for BS16057.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18813446..18813697 2..253 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:22:38 Download gff for BS16057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18813446..18813697 2..253 97   Plus

BS16057.3prime Sequence

264 bp (264 high quality bases) assembled on 2007-04-16

> BS16057.3prime
ATGGTCTAGAAAGCTTCTAGCAGAAGTGCAGGTTATTGAACTGCTCCCGA
TTGTGGGTGACCATCTGATTGTATTTGAAGGCGGCCGACTGCTGGGAGCT
GCTCTGAGCCGTGAGCCTGGTGTTCCGCAGGAAACTATCCGCCGGACTGC
TCGAAACGGCGTACTTTCCGCCCAGACCCTCCACGGTCCGCATGGGACTC
AGGTGCTTGGCGGGAATGGCCTTGCTGGGTGTGCGAGTTTGGTGAACCAT
GTCGACTGATAACT

BS16057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-PA 234 CG17325-RA 1..234 250..17 1170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42305-RC 1018 CG42305-RC 660..893 250..17 1170 100 Minus
CG42305-RB 779 CG42305-RB 299..532 250..17 1170 100 Minus
CG42305-RA 657 CG42305-RA 299..532 250..17 1170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18813461..18813694 250..17 1170 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:14:10 has no hits.

BS16057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:42 Download gff for BS16057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17325-PA 1..234 17..250 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:21 Download gff for BS16057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 285..535 14..264 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:12 Download gff for BS16057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42305-RA 285..535 14..264 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:12 Download gff for BS16057.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18813447..18813697 14..264 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:21 Download gff for BS16057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18813447..18813697 14..264 97   Minus

BS16057.complete Sequence

266 bp assembled on 2007-05-07

GenBank Submission: FJ638040

> BS16057.complete
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCTAG
AAGCTTTCTAGACCAT

BS16057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-RC 234 CG17325-PC 1..234 17..250 1170 100 Plus
CG17325-RB 234 CG17325-PB 1..234 17..250 1170 100 Plus
CG17325-RA 234 CG17325-PA 1..234 17..250 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42305-RC 1018 CG42305-RC 660..893 17..250 1170 100 Plus
CG42305-RB 779 CG42305-RB 299..532 17..250 1170 100 Plus
CG42305-RA 657 CG42305-RA 299..532 17..250 1170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18813461..18813694 17..250 1170 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:06:35 has no hits.

BS16057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:54 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RB 1..234 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:35 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RA 283..534 2..253 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:41 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 299..532 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:54 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RA 283..534 2..253 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:35 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
CG42305-RA 299..532 17..250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:35 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18813461..18813694 17..250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:41 Download gff for BS16057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18813461..18813694 17..250 100   Plus

BS16057.pep Sequence

Translation from 16 to 249

> BS16057.pep
MVHQTRTPSKAIPAKHLSPMRTVEGLGGKYAVSSSPADSFLRNTRLTAQS
SSQQSAAFKYNQMVTHNREQFNNLHFC*

BS16057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-PC 77 CG17325-PC 1..77 1..77 399 100 Plus
CG17325-PB 77 CG17325-PB 1..77 1..77 399 100 Plus
CG17325-PA 77 CG17325-PA 1..77 1..77 399 100 Plus