Clone BS16059 Report

Search the DGRC for BS16059

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG13220-RA
Protein status:BS16059.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16059.3prime Sequence

492 bp (492 high quality bases) assembled on 2007-04-16

> BS16059.3prime
ATGGTCTAGAAAGCTTCTAGTTCTTCTGCAGCTTATCCACGTCCTGAATG
TAATCAGTGCCGACCTTCACGATGGCGGCGCCAGTTCCCAAGCCCGCCAG
GGTCGCCAGCAGTGCATTGTCCTGTGGCAGGGCGGACTTGATGAGCGCCC
AGGCCAGAACGGATCCCATGGAGAATAGGGTGGCGCCCAGCAGGGCGTAC
GCACCTCGCTTGTTGTTCTTCACGTCCTTCAGGTGGGGCCTGCCGTAAAT
GTAGAAGGCACTGCCCACCACCGCGGAGATGAGGAACACGTTCGTCAGGT
CCTTCTTGGGCAGGATTTTGGGCACGATCTGGGGGTTCATAACATTCACC
GCAAGGGCTCCGTAGCTCACCAGGCCGTGCAGCGGTATGTAGTAGTTGAA
CACATTATCCCGGGTGAAGGGCTTGAGGCCCACTTTGTCGCATATGCTGC
AGGCGTCTTTTGACTGTGTCCCGGCCATGTCGACTGATAACT

BS16059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PA 462 CG13220-RA 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..678 478..16 2315 100 Minus
CG13220-RA 685 CG13220-RA 85..547 478..16 2315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284960 478..16 2315 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:38:05 has no hits.

BS16059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:44 Download gff for BS16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:27 Download gff for BS16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..547 16..478 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:29 Download gff for BS16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..547 16..478 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:29 Download gff for BS16059.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284960 16..478 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:27 Download gff for BS16059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172465 16..478 100   Minus

BS16059.5prime Sequence

492 bp (492 high quality bases) assembled on 2007-04-16

> BS16059.5prime
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACTAGAAGCTTTCTAGACC

BS16059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PA 462 CG13220-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..678 17..479 2315 100 Plus
CG13220-RA 685 CG13220-RA 85..547 17..479 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284960 17..479 2315 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:40:56 has no hits.

BS16059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:44 Download gff for BS16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:34 Download gff for BS16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..547 17..479 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:45 Download gff for BS16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..547 17..479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:45 Download gff for BS16059.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284960 17..479 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:34 Download gff for BS16059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172465 17..479 100   Plus

BS16059.complete Sequence

494 bp assembled on 2007-05-07

GenBank Submission: FJ638042

> BS16059.complete
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACTAGAAGCTTTCTAGACCAT

BS16059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 462 CG13220-PB 1..462 17..478 2310 100 Plus
CG13220-RA 462 CG13220-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..678 17..479 2315 100 Plus
CG13220-RA 685 CG13220-RA 85..547 17..479 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284960 17..479 2315 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:00:00 has no hits.

BS16059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:11 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:18 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 83..545 17..479 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:00 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..546 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:11 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 83..545 17..479 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:46 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..546 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:46 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284959 17..478 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:00 Download gff for BS16059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172464 17..478 100   Plus

BS16059.pep Sequence

Translation from 16 to 477

> BS16059.pep
MAGTQSKDACSICDKVGLKPFTRDNVFNYYIPLHGLVSYGALAVNVMNPQ
IVPKILPKKDLTNVFLISAVVGSAFYIYGRPHLKDVKNNKRGAYALLGAT
LFSMGSVLAWALIKSALPQDNALLATLAGLGTGAAIVKVGTDYIQDVDKL
QKN*

BS16059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PB 153 CG13220-PB 1..153 1..153 782 100 Plus
CG13220-PA 153 CG13220-PA 1..153 1..153 782 100 Plus