Clone Sequence Records
BS16062.3prime Sequence
333 bp (333 high quality bases) assembled on 2007-04-16
> BS16062.3prime
ATGGTCTAGAAAGCTTTTAGTTGCTGGGGGCGGTCGCCGATGTACCCGTC
GGCTGCTTGAAGATAACGCCTGTGATCTCGCCGTCCTTCTGGATGACACA
GCGTTTGTTTCCGCTGTAAAGGCAAATCGTTGCAGGAGCCGTGGCATTCA
GCTCCAGTTTGGCCACCTGCTCGGAAATGGCCATTCCGATGCCGGACACG
TTCGGATCAATGTCTCCTTTGGTGCCCAAACACAATCCCTGGCGATTGGC
CAGCAGAGCTCCCACTGTGTCCTGCCGTGCGGCGATTTCCGCTAGGACTT
TCTCCAGTTGCTGCTCCATGTCGACTGATAACT
BS16062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PA | 303 | CG14812-RA | 1..303 | 319..17 | 1515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..372 | 320..17 | 1520 | 100 | Minus |
| CG14812-RA | 720 | CG14812-RA | 69..372 | 320..17 | 1520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 105..222 | 590 | 100 | Plus |
| X | 23542271 | X | 1858319..1858406 | 17..104 | 440 | 100 | Plus |
| X | 23542271 | X | 1858736..1858797 | 223..284 | 310 | 100 | Plus |
| X | 23542271 | X | 1858868..1858903 | 285..320 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:10:22 has no hits.
BS16062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:45 Download gff for
BS16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-PA | 1..303 | 17..319 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:35 Download gff for
BS16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 89..397 | 17..328 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:01 Download gff for
BS16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 64..372 | 17..328 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:01 Download gff for
BS16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858319..1858406 | 17..104 | 100 | <- | Plus |
| X | 1858561..1858678 | 105..222 | 100 | <- | Plus |
| X | 1858736..1858797 | 223..284 | 100 | <- | Plus |
| X | 1858868..1858908 | 285..328 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:35 Download gff for
BS16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752352..1752439 | 17..104 | 100 | <- | Plus |
| arm_X | 1752594..1752711 | 105..222 | 100 | <- | Plus |
| arm_X | 1752769..1752830 | 223..284 | 100 | <- | Plus |
| arm_X | 1752901..1752941 | 285..328 | 93 | | Plus |
BS16062.5prime Sequence
333 bp (333 high quality bases) assembled on 2007-04-16
> BS16062.5prime
GAAGTTATCAGTCGACATGGAGCAGCAACTGGAGAAAGTCCTAGCGGAAA
TCGCCGCACGGCAGGACACAGTGGGAGCTCTGCTGGCCAATCGCCAGGGA
TTGTGTTTGGGCACCAAAGGAGACATTGATCCGAACGTGTCCGGCATCGG
AATGGCCATTTCCGAGCAGGTGGCCAAACTGGAGCTGAATGCCACGGCTC
CTGCAACGATTTGCCTTTACAGCGGAAACAAACGCTGTGTCATCCAGAAG
GACGGCGAGATCACAGGCGTTATCTTCAAGCAGCCGACGGGTACATCGGC
GACCGCCCCCAGCAACTAAAAGCTTTCTAGACC
BS16062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PA | 303 | CG14812-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..372 | 16..319 | 1520 | 100 | Plus |
| CG14812-RA | 720 | CG14812-RA | 69..372 | 16..319 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 231..114 | 590 | 100 | Minus |
| X | 23542271 | X | 1858319..1858406 | 319..232 | 440 | 100 | Minus |
| X | 23542271 | X | 1858736..1858797 | 113..52 | 310 | 100 | Minus |
| X | 23542271 | X | 1858868..1858903 | 51..16 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:08:35 has no hits.
BS16062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:45 Download gff for
BS16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-PA | 1..303 | 17..319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:27 Download gff for
BS16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 89..397 | 8..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:52 Download gff for
BS16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 64..372 | 8..319 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:52 Download gff for
BS16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858319..1858406 | 232..319 | 100 | <- | Minus |
| X | 1858561..1858678 | 114..231 | 100 | <- | Minus |
| X | 1858736..1858797 | 52..113 | 100 | <- | Minus |
| X | 1858868..1858908 | 8..51 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:27 Download gff for
BS16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752352..1752439 | 232..319 | 100 | <- | Minus |
| arm_X | 1752594..1752711 | 114..231 | 100 | <- | Minus |
| arm_X | 1752769..1752830 | 52..113 | 100 | <- | Minus |
| arm_X | 1752901..1752941 | 8..51 | 93 | | Minus |
BS16062.complete Sequence
335 bp assembled on 2007-05-07
GenBank Submission: FJ638043
> BS16062.complete
GAAGTTATCAGTCGACATGGAGCAGCAACTGGAGAAAGTCCTAGCGGAAA
TCGCCGCACGGCAGGACACAGTGGGAGCTCTGCTGGCCAATCGCCAGGGA
TTGTGTTTGGGCACCAAAGGAGACATTGATCCGAACGTGTCCGGCATCGG
AATGGCCATTTCCGAGCAGGTGGCCAAACTGGAGCTGAATGCCACGGCTC
CTGCAACGATTTGCCTTTACAGCGGAAACAAACGCTGTGTCATCCAGAAG
GACGGCGAGATCACAGGCGTTATCTTCAAGCAGCCGACGGGTACATCGGC
GACCGCCCCCAGCAACTAAAAGCTTTCTAGACCAT
BS16062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 303 | CG14812-PB | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG14812-RA | 303 | CG14812-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..372 | 16..319 | 1520 | 100 | Plus |
| CG14812-RA | 720 | CG14812-RA | 69..372 | 16..319 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 231..114 | 590 | 100 | Minus |
| X | 23542271 | X | 1858319..1858406 | 319..232 | 440 | 100 | Minus |
| X | 23542271 | X | 1858736..1858797 | 113..52 | 310 | 100 | Minus |
| X | 23542271 | X | 1858868..1858903 | 51..16 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:13 has no hits.
BS16062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:12 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 1..303 | 17..319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:20 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 44..352 | 8..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:38 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 95..395 | 17..317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:12 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 44..352 | 8..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:23 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 70..370 | 17..317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:23 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858736..1858797 | 52..113 | 100 | <- | Minus |
| X | 1858868..1858902 | 17..51 | 100 | | Minus |
| X | 1858321..1858406 | 232..317 | 100 | <- | Minus |
| X | 1858561..1858678 | 114..231 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:38 Download gff for
BS16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752354..1752439 | 232..317 | 100 | <- | Minus |
| arm_X | 1752594..1752711 | 114..231 | 100 | <- | Minus |
| arm_X | 1752769..1752830 | 52..113 | 100 | <- | Minus |
| arm_X | 1752901..1752935 | 17..51 | 100 | | Minus |
BS16062.pep Sequence
Translation from 16 to 318
> BS16062.pep
MEQQLEKVLAEIAARQDTVGALLANRQGLCLGTKGDIDPNVSGIGMAISE
QVAKLELNATAPATICLYSGNKRCVIQKDGEITGVIFKQPTGTSATAPSN
*
BS16062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PB | 100 | CG14812-PB | 1..100 | 1..100 | 502 | 100 | Plus |
| CG14812-PA | 100 | CG14812-PA | 1..100 | 1..100 | 502 | 100 | Plus |
